Structure based on 1d67

Ideal structure
Name: idarubicin
Formula: C26 H27 N O9
Weight: 497.494
SMILES: "C[CH]1O[CH](C[CH](N)[CH]1O)O[CH]2C[C](O)(Cc3c(O)c4C(=O)c5ccccc5C(=O)c4c(O)c23)C(C)=O"
Spacial conformation based on PDB 1d67.
Also present on 198d, 1d38, 3arq, 4lb2
RESIDUE   DM5     63
CONECT      C1     3 C2   C20  H1  
CONECT      C2     3 C1   C3   H2  
CONECT      C3     3 C2   C4   H3  
CONECT      C4     3 C3   C5   H4  
CONECT      C5     3 C4   C6   C20 
CONECT      C6     3 C5   O6   C7  
CONECT      O6     1 C6  
CONECT      C7     3 C6   C8   C18 
CONECT      C8     3 C7   O8   C9  
CONECT      O8     2 C8   HO8 
CONECT      C9     3 C8   C10  C16 
CONECT      C10    4 C9   O10  C11  H10 
CONECT      O10    2 C10  C1' 
CONECT      C11    4 C10  C12  H111 H112
CONECT      C12    4 C11  O12  C13  C15 
CONECT      O12    2 C12  HO12
CONECT      C13    3 C12  O13  C14 
CONECT      O13    1 C13 
CONECT      C14    4 C13  H141 H142 H143
CONECT      C15    4 C12  C16  H151 H152
CONECT      C16    3 C9   C15  C17 
CONECT      C17    3 C16  O17  C18 
CONECT      O17    2 C17  HO17
CONECT      C18    3 C7   C17  C19 
CONECT      C19    3 C18  O19  C20 
CONECT      O19    1 C19 
CONECT      C20    3 C1   C5   C19 
CONECT      C1'    4 O10  C2'  O5'  H1' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C3'    4 C2'  N3'  C4'  H3' 
CONECT      N3'    3 C3'  HN'1 HN'2
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C4'  HO4'
CONECT      C5'    4 C4'  O5'  C6'  H5' 
CONECT      O5'    2 C1'  C5' 
CONECT      C6'    4 C5'  H6'1 H6'2 H6'3
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      HO8    1 O8  
CONECT      H10    1 C10 
CONECT      H111   1 C11 
CONECT      H112   1 C11 
CONECT      HO12   1 O12 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H143   1 C14 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      HO17   1 O17 
CONECT      H1'    1 C1' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HN'1   1 N3' 
CONECT      HN'2   1 N3' 
CONECT      H4'    1 C4' 
CONECT      HO4'   1 O4' 
CONECT      H5'    1 C5' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H6'3   1 C6' 
END   
HET    DM5             63
HETSYN     DM5 4-DEMETHOXY-DAUNORUBICIN
HETNAM     DM5 IDARUBICIN
FORMUL      DM5    C26 H27 N1 O9

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science