Structure based on 1zpd

Ideal structure
Name: mono-{4-[(4-amino-2-methyl-pyrimidin-5-ylmethyl)-amino]-2-hydroxy-3-mercapto-pent-3-enyl-phosphono} ester
Formula: C11 H20 N4 O8 P2 S
Weight: 430.311
SMILES: "CC(NCc1cnc(C)nc1N)=C(S)[CH](O)CO[P](O)(=O)O[P](O)(O)=O"
Spacial conformation based on PDB 1zpd
RESIDUE   DPX     46
CONECT      C4     3 C5   C15  N3  
CONECT      C5     3 C4   C16  S1  
CONECT      O21    2 P19  HOL 
CONECT      O22    2 P23  P19 
CONECT      O26    2 P23  HOQ 
CONECT      O25    1 P23 
CONECT      O24    2 P23  HOO 
CONECT      P23    4 O22  O26  O25  O24 
CONECT      P19    4 O21  O22  O20  O18 
CONECT      O20    1 P19 
CONECT      O18    2 P19  C17 
CONECT      C17    4 O18  C16  H171 H172
CONECT      C16    4 C5   C17  O27  H16 
CONECT      C15    4 C4   H151 H152 H153
CONECT      N3     3 C4   C6   HN3 
CONECT      O27    2 C16  HOR 
CONECT      S1     2 C5   HS1 
CONECT      C6     4 N3   C7   H61  H62 
CONECT      C7     3 C6   C8   C12 
CONECT      C8     3 C7   N9   N13 
CONECT      N9     2 C8   C10 
CONECT      C10    3 N9   N11  C14 
CONECT      N11    2 C10  C12 
CONECT      C12    3 C7   N11  H12 
CONECT      N13    3 C8   HND1 HND2
CONECT      C14    4 C10  H141 H142 H143
CONECT      HOL    1 O21 
CONECT      HOQ    1 O26 
CONECT      HOO    1 O24 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H16    1 C16 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      H153   1 C15 
CONECT      HN3    1 N3  
CONECT      HOR    1 O27 
CONECT      HS1    1 S1  
CONECT      H61    1 C6  
CONECT      H62    1 C6  
CONECT      H12    1 C12 
CONECT      HND1   1 N13 
CONECT      HND2   1 N13 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H143   1 C14 
END   
HET    DPX             46
HETNAM     DPX MONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]
HETNAM   2 DPX -2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER
FORMUL      DPX    C11 H20 N4 O8 P2 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science