*HEADER DNA 05-FEB-10 2KTP *TITLE STRUCTURE OF THE 1,N2-ETHENODEOXYGUANOSINE LESION OPPOSITE A *TITLE 2 ONE-BASE DELETION IN DUPLEX DNA *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*AP*TP*(GNE) *COMPND 3 P*GP*AP*AP*TP*CP*C)-3'); *COMPND 4 CHAIN: A; *COMPND 5 ENGINEERED: YES; *COMPND 6 MOL_ID: 2; *COMPND 7 MOLECULE: DNA (5'-D(*GP*GP*AP*TP*TP*CP*AP*TP*GP*CP*G)-3'); *COMPND 8 CHAIN: B; *COMPND 9 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 MOL_ID: 2; *SOURCE 4 SYNTHETIC: YES *KEYWDS ETHENOGUANINE, ONE-BASE DELETION, DNA *EXPDTA SOLUTION NMR *NUMMDL 1 *AUTHOR G.SHANMUGAM, I.D.KOZEKOV, P.F.GUENGERICH, C.J.RIZZO, *AUTHOR 2 M.P.STONE *REVDAT 2 23-JUN-10 2KTP 1 *REVDAT 1 23-MAR-10 2KTP 0 1 CYT H5 1 CYT H6 1.92 2.3 1 CYT H3' 1 CYT H6 2.41 4.33 1 CYT H2' 1 CYT H6 2.1 2.39 1 CYT H2'' 1 CYT H6 2.49 3.25 1 CYT H1' 1 CYT H6 2.41 3.45 1 CYT H1' 2 GUA H8 4.03 6.35 2 GUA H8 1 CYT H6 3.95 5.98 2 GUA H8 1 CYT H3' 3.51 5.23 2 GUA H8 1 CYT H2' 3.01 3.86 2 GUA H8 1 CYT H2'' 2.63 3.72 2 GUA H3' 2 GUA H8 2.66 4.78 2 GUA H2' 2 GUA H8 2.09 2.41 2 GUA H2'' 2 GUA H8 2.18 3.06 2 GUA H1' 2 GUA H8 2.07 5.01 2 GUA H1' 3 CYT H6 2.93 3.76 3 CYT H6 2 GUA H8 4.46 6.24 3 CYT H6 2 GUA H3' 5.1 7.02 3 CYT H6 2 GUA H2' 3.16 4.48 3 CYT H6 2 GUA H2'' 2.75 3.7 3 CYT H5 2 GUA H8 3.01 5.01 3 CYT H5 3 CYT H6 2.23 2.58 3 CYT H3' 3 CYT H6 3.37 4.51 3 CYT H2' 3 CYT H6 2.11 2.32 3 CYT H2'' 3 CYT H6 2.86 4.95 3 CYT H1' 3 CYT H6 2.9 4.36 3 CYT H1' 4 ADE H8 3.35 5.09 4 ADE H8 3 CYT H6 4.18 6.3 4 ADE H8 3 CYT H2' 3.9 5.75 4 ADE H8 3 CYT H2'' 2.92 4 4 ADE H8 4 ADE H1' 3.05 5.01 4 ADE H2' 4 ADE H8 2.79 3.52 4 ADE H2'' 4 ADE H8 2.35 3.06 4 ADE H2 5 THY H1' 4.46 5.41 5 THY H6 4 ADE H1' 2.8 4.32 5 THY H6 4 ADE H8 4.02 6.29 5 THY H6 4 ADE H3' 3.86 5.56 5 THY H6 4 ADE H2' 3.18 3.99 5 THY H6 4 ADE H2'' 2.81 3.8 5 THY H6 5 THY H1' 3.22 4.53 5 THY Q5 4 ADE H1' 4.18 6.13 5 THY Q5 4 ADE H8 2.61 3.86 5 THY Q5 4 ADE H3' 3.6 4.82 5 THY Q5 4 ADE H2' 3.62 5.1 5 THY Q5 4 ADE H2'' 3.49 4.71 5 THY Q5 5 THY H6 2.23 2.64 5 THY H3' 5 THY H6 3.31 5.14 5 THY H2'' 5 THY H6 2.11 4.54 6 ETH H8 5 THY H1' 4.64 6.49 6 ETH H8 5 THY H6 4.1 5.61 6 ETH H8 5 THY H3' 4.88 7.05 6 ETH H8 5 THY H2' 2.97 3.9 6 ETH H8 5 THY H2'' 3.09 4.27 6 ETH H3' 6 ETH H8 3.31 3.59 6 ETH H2' 6 ETH H8 2.48 2.75 6 ETH H2'' 6 ETH H8 2.45 2.77 6 ETH H1' 6 ETH H8 3.61 4.22 6 ETH H1' 7 GUA H8 4.35 6.52 6 ETH H10 6 ETH H11 2.72 3.08 6 ETH H10 18 CYT H5 3.59 6.38 6 ETH H10 18 CYT H2' 3.63 5.16 6 ETH H10 18 CYT H2'' 3.7 4.45 6 ETH H10 19 ADE H2 5.68 6.23 7 GUA H8 7 GUA H1' 1.89 2.87 7 GUA H3' 7 GUA H8 3.16 3.97 8 ADE H8 7 GUA H1' 2.25 4.13 8 ADE H8 7 GUA H8 2.2 2.74 8 ADE H8 7 GUA H3' 4.56 6.77 8 ADE H1' 8 ADE H8 2.07 4.56 8 ADE H1' 9 ADE H8 2.07 3.9 9 ADE H1' 8 ADE H8 4.03 4.93 9 ADE H8 8 ADE H3' 6.72 8.68 9 ADE H8 8 ADE H2' 2.88 4.68 9 ADE H8 9 ADE H1' 2.32 4.93 9 ADE H3' 9 ADE H8 2.14 4.26 9 ADE H2' 9 ADE H8 2.42 2.62 9 ADE H2'' 9 ADE H8 2.5 3.25 10 THY H1' 9 ADE H2 3.01 3.55 10 THY H6 9 ADE H8 2.47 3.26 10 THY H6 9 ADE H3' 2.69 4.19 10 THY H6 10 THY H1' 2.72 4.11 10 THY Q5 9 ADE H1' 4.13 5.52 10 THY Q5 9 ADE H8 3.24 4.69 10 THY Q5 9 ADE H3' 3.63 4.65 10 THY Q5 9 ADE H2' 3.19 4.53 10 THY Q5 9 ADE H2'' 2.95 4.39 10 THY H2' 10 THY H6 2.72 3.44 10 THY H2'' 10 THY H6 2.12 2.73 11 CYT H6 10 THY H1' 2.29 4.71 11 CYT H6 10 THY H2' 2.5 2.8 11 CYT H6 10 THY H2'' 2.77 3.3 11 CYT H5 10 THY Q5 2.85 5.05 11 CYT H5 11 CYT H6 2.24 2.48 11 CYT H1' 11 CYT H6 2.53 4.6 11 CYT H1' 12 CYT H6 3.43 5.04 12 CYT H6 11 CYT H3' 3.09 5.13 12 CYT H6 11 CYT H2'' 2.58 3.24 12 CYT H5 11 CYT H6 3.05 4.81 12 CYT H5 11 CYT H5 3.33 4.06 12 CYT H5 12 CYT H6 2.22 2.4 12 CYT H1' 12 CYT H6 2.46 4.13 14 GUA H8 13 GUA H3' 2.27 3.93 14 GUA H3' 14 GUA H8 3.16 4.8 14 GUA H1' 15 ADE H8 1.96 3.24 15 ADE H8 14 GUA H8 2.24 3.2 15 ADE H1' 15 ADE H8 2.71 4.37 15 ADE H1' 16 THY H6 2.26 2.86 15 ADE H1' 16 THY Q5 4.25 5.65 16 THY H6 15 ADE H8 3.02 5.68 16 THY H6 16 THY H1' 2.92 4.75 16 THY Q5 15 ADE H8 3.26 4.01 16 THY Q5 15 ADE H3' 3.32 4.73 16 THY Q5 15 ADE H2' 5.01 6.97 16 THY Q5 15 ADE H2'' 2.53 4.12 16 THY Q5 16 THY H6 2 2.31 17 THY H6 16 THY H1' 2.25 3.44 17 THY H6 17 THY H1' 1.91 4.27 16 THY H6 17 THY H6 4.51 5.54 17 THY Q5 16 THY H1' 2.55 3.64 17 THY Q5 16 THY H6 2.98 3.95 17 THY Q5 16 THY Q5 3.65 5.29 17 THY Q5 16 THY H3' 2.85 4.32 17 THY Q5 16 THY H2' 3.2 4.56 17 THY Q5 16 THY H2'' 2.52 3.48 17 THY Q5 17 THY H6 3.32 5.45 17 THY H3' 17 THY H6 2.11 2.95 18 CYT H1' 6 ETH H11 4.32 4.88 18 CYT H6 17 THY H6 4.39 6.74 18 CYT H6 17 THY H3' 2.81 3.27 18 CYT H5 17 THY H6 3.19 4.93 18 CYT H5 17 THY Q5 2.75 4.73 18 CYT H5 19 ADE H8 4.03 5.57 18 CYT H3' 19 ADE H8 4.06 5.27 18 CYT H2' 6 ETH H11 2.47 2.82 18 CYT H2'' 6 ETH H11 2.44 2.87 19 ADE H1' 6 ETH H11 2.13 3.36 19 ADE H8 18 CYT H1' 2.91 5.37 19 ADE H8 18 CYT H6 3.17 3.8 19 ADE H8 18 CYT H3' 3.24 4.68 19 ADE H8 19 ADE H1' 5.1 5.72 19 ADE H2 19 ADE H1' 3.15 5.55 19 ADE H3' 19 ADE H8 2.07 3.07 20 THY H6 19 ADE H1' 2.72 3.45 20 THY H6 19 ADE H8 2.75 3.95 20 THY H6 19 ADE H3' 2.58 2.92 20 THY Q5 19 ADE H1' 1.94 3.43 20 THY Q5 19 ADE H8 3.76 5.52 20 THY Q5 19 ADE H3' 3.18 4.93 20 THY Q5 19 ADE H2' 3.16 5.09 20 THY Q5 19 ADE H2'' 2.91 3.33 20 THY Q5 20 THY H6 2.65 4.18 20 THY H1' 21 GUA H8 3.61 5.05 20 THY H1' 19 ADE H2 3.13 4.78 21 GUA H8 20 THY H6 5.02 6.15 21 GUA H8 20 THY H3' 3.36 4.67 21 GUA H8 21 GUA H1' 3.35 5.37 21 GUA H3' 21 GUA H8 2.19 2.89 22 CYT H6 21 GUA H1' 3.08 6.33 22 CYT H6 21 GUA H8 3.25 5.28 22 CYT H5 21 GUA H8 2.62 3.39 22 CYT H5 22 CYT H6 3.83 5.16 22 CYT H3' 22 CYT H6 2.94 3.27 22 CYT H1' 22 CYT H6 3.6 5.03 22 CYT H1' 23 GUA H8 4.63 5.82 23 GUA H8 22 CYT H6 4.48 5.15 23 GUA H8 22 CYT H3' 3.2 3.9 23 GUA H3' 23 GUA H8 2.33 2.45 23 GUA H1' 23 GUA H8 3.88 5.72 1 CYT H1' 1 CYT H3' 4.06 4.66 1 CYT H1' 1 CYT H2' 2.96 4.81 1 CYT H1' 1 CYT H2'' 1.9 2.36 2 GUA H1' 2 GUA H3' 2.78 4.85 3 CYT H2' 3 CYT H5 2.71 4.13 3 CYT H2'' 3 CYT H5 3.17 6.56 3 CYT H1' 3 CYT H3' 3.38 4.03 4 ADE H3' 4 ADE H1' 2.9 4.56 4 ADE H2' 4 ADE H1' 2.17 3.28 4 ADE H2 19 ADE H2 4.53 5.21 5 THY H3' 5 THY H1' 2.62 5.11 5 THY H2' 5 THY H1' 2.35 3.92 5 THY H2'' 5 THY H1' 2.16 2.58 6 ETH H1' 6 ETH H3' 3.7 4.36 6 ETH H1' 6 ETH H2' 2.82 3.06 6 ETH H1' 6 ETH H2'' 2.77 2.93 7 GUA H3' 7 GUA H1' 3.85 4.91 8 ADE H3' 8 ADE H8 2.99 4.51 8 ADE H2'' 8 ADE H8 3.03 4.54 8 ADE H1' 8 ADE H2 5.29 6.22 8 ADE H1' 8 ADE H3' 4.05 5.49 9 ADE H8 8 ADE H2'' 2.18 3.05 9 ADE H2 8 ADE H2 4.29 4.66 9 ADE H2 9 ADE H1' 5.11 6.08 9 ADE H3' 9 ADE H1' 4.26 5.35 9 ADE H2' 9 ADE H1' 2.15 2.66 10 THY H6 9 ADE H1' 2.62 3.11 10 THY H6 9 ADE H2' 2.71 3.1 10 THY H6 9 ADE H2'' 2.8 3.22 10 THY Q5 10 THY H6 2.23 2.42 10 THY H3' 10 THY H1' 4.21 6.03 10 THY H2' 10 THY H1' 1.97 2.84 10 THY H2'' 10 THY H1' 2.32 2.51 11 CYT H6 10 THY H6 2.93 3.89 11 CYT H5 10 THY H6 3.45 4.24 11 CYT H3' 11 CYT H6 2.12 3.01 11 CYT H2' 11 CYT H6 2.19 3.53 11 CYT H2' 11 CYT H5 1.95 2.29 11 CYT H2'' 11 CYT H6 2.32 2.45 11 CYT H1' 11 CYT H3' 2.14 2.98 11 CYT H1' 11 CYT H2' 2.22 3.15 11 CYT H1' 11 CYT H2'' 2.41 3.15 11 CYT H1' 15 ADE H2 3.92 4.2 12 CYT H6 11 CYT H6 2.51 3.51 12 CYT H6 11 CYT H2' 2.36 3.27 12 CYT H3' 12 CYT H6 1.95 2.99 12 CYT H1' 12 CYT H3' 2.1 2.86 13 GUA H3' 13 GUA H8 2.5 4.29 13 GUA H1' 13 GUA H3' 3.62 5.27 13 GUA H1' 13 GUA H2' 2.17 3.3 14 GUA H1' 14 GUA H3' 3.1 4.29 14 GUA H1' 14 GUA H2'' 2.05 2.62 15 ADE H8 14 GUA H2'' 2.5 3.98 15 ADE H3' 15 ADE H8 2.07 3.13 15 ADE H2' 15 ADE H3' 2.16 2.3 15 ADE H2'' 15 ADE H8 2.56 2.99 15 ADE H2'' 15 ADE H3' 2.1 2.37 15 ADE H1' 15 ADE H2 5.84 6.59 15 ADE H1' 15 ADE H3' 3.72 5.09 15 ADE H1' 15 ADE H2' 2.34 3.01 15 ADE H1' 15 ADE H2'' 2.06 2.26 16 THY H1' 15 ADE H2 3.6 3.94 16 THY H6 15 ADE H3' 3.91 5.38 16 THY H6 15 ADE H2' 2.91 3.27 16 THY H3' 16 THY H1' 2 2.75 16 THY H2' 16 THY H1' 2.5 3.72 16 THY H2' 16 THY H6 1.87 3.08 16 THY H2'' 16 THY H1' 2.34 3.48 17 THY H1' 9 ADE H2 3.45 4.02 17 THY H6 16 THY H3' 2.19 2.36 17 THY H6 16 THY H2' 2.35 3.39 17 THY H3' 17 THY H1' 1.66 3.47 17 THY H2' 17 THY H1' 2.27 2.7 17 THY H2' 17 THY H6 2.19 2.65 17 THY H2'' 17 THY H1' 2.29 3.05 18 CYT H1' 8 ADE H2 3.21 3.79 18 CYT H1' 17 THY H2' 3.27 4.24 18 CYT H1' 17 THY H2'' 2.51 3.98 18 CYT H6 17 THY H1' 2.19 4.53 18 CYT H6 17 THY H2' 2.75 3.27 18 CYT H6 17 THY H2'' 3.19 4.46 18 CYT H3' 18 ADE H1' 3.67 4.74 18 CYT H2' 18 CYT H1' 2.24 2.55 18 CYT H2' 18 CYT H6 4.22 6.11 18 CYT H2' 18 CYT H5 2.48 2.91 18 CYT H2'' 18 CYT H1' 2.45 2.71 18 CYT H2'' 18 CYT H6 3.87 5.06 18 CYT H2'' 18 CYT H5 2.49 2.86 19 ADE H8 6 ETH H11 6.18 7.38 19 ADE H8 18 CYT H2' 2.97 3.84 19 ADE H8 18 CYT H2'' 3.37 6.6 19 ADE H2 6 ETH H11 4.88 5.89 19 ADE H3' 19 ADE H1' 2.74 5.1 19 ADE H2' 19 ADE H1' 2.11 2.75 19 ADE H2' 19 ADE H3' 2.27 2.48 19 ADE H2'' 19 ADE H1' 2.44 3.13 19 ADE H2'' 19 ADE H8 2.07 2.73 19 ADE H2'' 19 ADE H3' 2.06 2.84 20 THY H6 19 ADE H2'' 2.3 3.55 20 THY H2'' 20 THY H6 3.9 4.03 20 THY H1' 20 THY H6 3.85 6.01 21 GUA H8 20 THY H2' 2.96 4.47 21 GUA H8 20 THY H2'' 2.02 4.88 21 GUA H3' 21 GUA H1' 3.25 4.61 21 GUA H2' 21 GUA H1' 2.04 2.57 21 GUA H2' 21 GUA H8 2.07 2.63 21 GUA H2'' 21 GUA H1' 2.13 3.42 21 GUA H2'' 21 GUA H8 3.04 4.39 22 CYT H5 21 GUA H2' 3.01 3.76 22 CYT H5 21 GUA H2'' 3.59 4.09 22 CYT H2' 22 CYT H6 3.75 4.64 22 CYT H2' 22 CYT H5 2.45 2.64 22 CYT H2'' 22 CYT H6 3.82 6.48 22 CYT H2'' 22 CYT H5 2.8 3.28 22 CYT H1' 22 CYT H5 2.22 2.57 22 CYT H1' 22 CYT H3' 3.07 4.02 22 CYT H1' 22 CYT H2' 2.33 2.61 22 CYT H1' 22 CYT H2'' 2.92 3.97 23 GUA H2' 23 GUA H8 2.92 3.57 23 GUA H2'' 23 GUA H8 2.59 2.8 23 GUA H1' 23 GUA H3' 3.35 4.46 23 GUA H1' 23 GUA H2' 2.8 3.18 23 GUA H1' 23 GUA H2'' 2.31 2.49 2 GUA H1' 3 CYT H5 3.15 4.83 3 CYT H1' 3 CYT H2' 2.43 3.68 3 CYT H1' 3 CYT H2'' 2.01 2.24 4 ADE H3' 4 ADE H8 2.06 4.04 5 THY H2' 5 THY H6 2.35 2.81 5 THY H2'' 5 THY H2' 2.11 2.38 7 GUA H2' 7 GUA H1' 2.32 3.08 7 GUA H2' 7 GUA H8 2.25 2.74 7 GUA H2'' 7 GUA H1' 2.06 2.94 8 ADE H1' 8 ADE H2'' 2.27 2.64 9 ADE H2'' 9 ADE H2' 2.25 2.43 11 CYT H2' 11 CYT H3' 1.94 2.65 12 CYT H2' 12 CYT H6 2.39 2.7 12 CYT H1' 12 CYT H2' 2.33 2.71 12 CYT H1' 12 CYT H2'' 2.04 2.27 13 GUA H2'' 13 GUA H3' 2.39 3.09 13 GUA H1' 13 GUA H8 1.98 3.7 14 GUA H2'' 14 GUA H8 2.45 3.79 14 GUA H1' 14 GUA H2' 2.28 3.07 15 ADE H8 14 GUA H2' 2.28 2.88 15 ADE H2' 15 ADE H8 2.71 3.45 15 ADE H4' 15 ADE H8 4.61 6.41 16 THY H6 15 ADE H2'' 2.48 3.68 16 THY H2'' 16 THY H6 2.23 2.55 17 THY H6 16 THY H2'' 2.55 4.49 17 THY H2' 17 THY H3' 2.26 2.83 17 THY H2'' 17 THY H6 2.02 2.5 17 THY H2'' 17 THY H3' 2.08 2.34 17 THY H2'' 17 THY H2' 3.27 4.06 18 CYT H6 18 CYT H1' 2.87 3.49 18 CYT H2' 18 CYT H3' 4.21 5.37 18 CYT H2'' 18 CYT H3' 2.13 2.44 19 ADE H4' 19 ADE H8 2.63 4.68 20 THY H1' 20 THY H3' 2.5 3.37 22 CYT H6 21 GUA H3' 2.44 3.74 22 CYT H6 21 GUA H2' 2.63 3.9 22 CYT H6 21 GUA H2'' 3.24 4.77 22 CYT H2' 22 CYT H3' 2.29 2.49 22 CYT H2'' 22 CYT H3' 2.14 2.41 22 CYT H2'' 22 CYT H2' 4.54 5.2 23 GUA H8 22 CYT H2' 2.63 3.85 23 GUA H8 22 CYT H2'' 3.81 4.83 23 GUA H2' 23 GUA H3' 2.9 3.38 23 GUA H2'' 23 GUA H3' 2.12 2.43 1 CYT H2' 1 CYT H3' 2.21 2.97 1 CYT H2'' 1 CYT H3' 3.12 4.99 2 GUA H4' 2 GUA H8 5.11 7.07 2 GUA H1' 2 GUA H2' 2.27 3.42 2 GUA H1' 2 GUA H2'' 2.08 2.37 3 CYT H5 2 GUA H3' 4.47 7.19 4 ADE H2'' 4 ADE H1' 2.07 2.71 4 ADE H2'' 4 ADE H3' 1.94 2.23 4 ADE H2'' 4 ADE H2' 2.34 2.66 7 GUA H8 6 ETH H3' 5.02 6.62 7 GUA H8 6 ETH H2' 2.59 2.9 7 GUA H8 6 ETH H2'' 2.81 3.17 7 GUA H2'' 7 GUA H8 2 3.25 7 GUA H4' 7 GUA H8 3.49 5.45 8 ADE H8 7 GUA H2' 2.45 3.59 8 ADE H8 7 GUA H2'' 2.49 4.42 8 ADE H2' 8 ADE H8 2.22 2.59 8 ADE H4' 8 ADE H8 6.41 7.47 8 ADE H1' 8 ADE H2' 2.13 3.58 9 ADE H2' 9 ADE H3' 2.18 2.39 9 ADE H2'' 9 ADE H1' 2.23 2.47 9 ADE H2'' 9 ADE H3' 2.22 2.74 9 ADE H4' 9 ADE H8 5.06 7.85 10 THY H3' 10 THY H6 2.47 2.75 10 THY H2'' 10 THY H2' 2.29 2.53 11 CYT H5 10 THY H1' 3.09 3.75 11 CYT H2'' 11 CYT H2' 2.27 2.52 12 CYT H5 11 CYT H3' 3.86 5.88 12 CYT H5 11 CYT H2' 1.82 3.19 12 CYT H2' 12 CYT H5 2.06 4.19 12 CYT H2' 12 CYT H3' 2.14 2.5 13 GUA H2' 13 GUA H3' 2.21 2.57 13 GUA H1' 13 GUA H2'' 2.32 2.94 13 GUA H1' 14 GUA H8 2.13 3.1 14 GUA H1' 14 GUA H8 1.98 2.78 15 ADE H2'' 15 ADE H2' 2.34 2.84 16 THY H2' 16 THY H3' 2.15 2.41 16 THY H2'' 16 THY H2' 2.01 2.22 18 CYT H5 17 THY H3' 2.06 2.42 20 THY H6 19 ADE H2' 2.55 2.81 20 THY H3' 20 THY H6 2.58 4.19 20 THY H2' 20 THY H6 1.97 2.2 20 THY H1' 20 THY H2' 2.2 2.47 20 THY H1' 20 THY H2'' 3.02 4.24 23 GUA H2'' 23 GUA H2' 0 1.96 4 ADE H2' 4 ADE H3' 2.17 2.39 4 ADE H4' 4 ADE H1' 2.63 3.6 6 ETH H2'' 6 ETH H2' 2.32 2.54 7 GUA H4' 7 GUA H1' 3.03 4.15 9 ADE H4' 9 ADE H1' 2.43 3.26 11 CYT H2'' 11 CYT H5 2.83 4.38 11 CYT H2'' 11 CYT H3' 2.17 2.98 13 GUA H2' 13 GUA H8 2.03 2.57 13 GUA H2'' 13 GUA H8 2.18 2.63 13 GUA H2'' 13 GUA H2' 2.17 2.44 14 GUA H8 13 GUA H2' 2.14 3.59 14 GUA H8 13 GUA H2'' 2.32 2.7 14 GUA H2' 14 GUA H8 2.21 2.99 15 ADE H4' 15 ADE H2' 3.02 3.89 16 THY H3' 16 THY H6 2.1 2.75 16 THY H2'' 16 THY H3' 2.29 2.96 18 CYT H2'' 18 CYT H2' 4.32 5.06 19 ADE H2'' 19 ADE H2' 2.73 3.39 19 ADE H4' 19 ADE H1' 3.98 5.94 Entry H atom name Submitted Coord H atom name 1 H5' DC 1 2H5* DC 1 6.537 -13.124 3.654 2 H5'' DC 1 1H5* DC 1 7.731 -13.085 4.955 3 H4' DC 1 H4* DC 1 7.706 -11.011 3.509 4 H3' DC 1 H3* DC 1 7.706 -11.001 6.422 5 H2' DC 1 1H2* DC 1 5.848 -9.624 6.603 6 H2'' DC 1 2H2* DC 1 6.960 -8.327 6.148 7 H1' DC 1 H1* DC 1 6.452 -8.526 3.819 8 H41 DC 1 1H4 DC 1 -0.045 -7.582 4.834 9 H42 DC 1 2H4 DC 1 0.474 -6.579 3.485 10 H5 DC 1 H5 DC 1 1.439 -9.195 5.867 11 H6 DC 1 H6 DC 1 3.753 -9.957 5.972 12 HO5' DC 1 H5T DC 1 4.956 -12.455 5.213 13 H5' DG 2 2H5* DG 2 9.654 -7.397 3.886 14 H5'' DG 2 1H5* DG 2 11.050 -6.942 4.873 15 H4' DG 2 H4* DG 2 10.036 -4.960 3.803 16 H3' DG 2 H3* DG 2 10.622 -5.081 6.584 17 H2' DG 2 1H2* DG 2 8.363 -5.111 7.242 18 H2'' DG 2 2H2* DG 2 8.584 -3.352 7.170 19 H1' DG 2 H1* DG 2 7.733 -3.249 4.892 20 H8 DG 2 H8 DG 2 6.415 -6.241 6.930 21 H1 DG 2 H1 DG 2 1.805 -2.608 4.104 22 H21 DG 2 1H2 DG 2 4.532 -0.833 3.021 23 H22 DG 2 2H2 DG 2 2.766 -0.969 3.022 24 H5' DC 3 2H5* DC 3 9.652 -1.038 4.412 25 H5'' DC 3 1H5* DC 3 10.668 0.203 5.155 26 H4' DC 3 H4* DC 3 8.475 1.093 4.430 27 H3' DC 3 H3* DC 3 9.578 1.546 7.031 28 H2' DC 3 1H2* DC 3 7.883 0.385 8.163 29 H2'' DC 3 2H2* DC 3 7.044 1.940 8.023 30 H1' DC 3 H1* DC 3 5.942 1.288 5.969 31 H41 DC 3 1H4 DC 3 3.233 -3.912 9.029 32 H42 DC 3 2H4 DC 3 1.943 -2.927 8.349 33 H5 DC 3 H5 DC 3 5.532 -3.240 8.981 34 H6 DC 3 H6 DC 3 7.086 -1.655 7.944 35 H5' DA 4 1H5* DA 4 6.065 4.217 5.338 36 H5'' DA 4 2H5* DA 4 6.496 5.872 5.798 37 H4' DA 4 H4* DA 4 4.047 5.536 5.827 38 H3' DA 4 H3* DA 4 5.518 6.685 7.988 39 H2' DA 4 1H2* DA 4 5.048 4.918 9.480 40 H2'' DA 4 2H2* DA 4 3.580 5.885 9.764 41 H1' DA 4 H1* DA 4 2.326 4.621 8.108 42 H8 DA 4 H8 DA 4 5.286 2.553 9.470 43 H61 DA 4 2H6 DA 4 2.410 -1.165 11.279 44 H62 DA 4 1H6 DA 4 0.669 -1.468 11.125 45 H2 DA 4 H2 DA 4 -1.150 1.870 9.091 46 H5' DT 5 1H5* DT 5 0.790 7.445 7.842 47 H5'' DT 5 2H5* DT 5 0.564 9.046 8.570 48 H4' DT 5 H4* DT 5 -1.172 7.429 9.303 49 H3' DT 5 H3* DT 5 0.652 8.683 11.315 50 H2' DT 5 1H2* DT 5 0.333 7.024 12.860 51 H2'' DT 5 2H2* DT 5 -1.427 7.160 12.706 52 H1' DT 5 H1* DT 5 -1.598 5.511 11.098 53 H3 DT 5 H3 DT 5 -0.612 1.668 13.257 54 H71 DT 5 3H7 DT 5 4.023 2.672 12.648 55 H72 DT 5 1H7 DT 5 4.017 4.440 12.495 56 H73 DT 5 2H7 DT 5 3.777 3.673 14.084 57 H6 DT 5 H6 DT 5 2.022 5.462 11.878 58 H5' GNE 6 1H5* GNE 6 -3.894 8.997 12.861 59 H5'' GNE 6 2H5* GNE 6 -3.780 10.565 13.677 60 H4' GNE 6 H4* GNE 6 -4.815 8.959 15.176 61 H3' GNE 6 H3* GNE 6 -2.035 9.832 15.982 62 H2' GNE 6 1H2* GNE 6 -1.954 8.218 17.622 63 H2'' GNE 6 2H2* GNE 6 -3.661 8.440 18.054 64 H1' GNE 6 H1* GNE 6 -4.390 6.760 16.716 65 H8 GNE 6 H8 GNE 6 -0.675 6.660 15.750 66 H2 GNE 6 2H2 GNE 6 -6.160 2.654 18.202 67 HM2 GNE 6 H11 GNE 6 -5.611 0.034 18.327 68 H11 GNE 6 H10 GNE 6 -3.124 -0.269 17.730 69 H5' DG 7 1H5* DG 7 -5.984 10.728 18.293 70 H5'' DG 7 2H5* DG 7 -5.724 12.031 19.457 71 H4' DG 7 H4* DG 7 -7.249 10.136 20.215 72 H3' DG 7 H3* DG 7 -5.409 11.556 21.805 73 H2' DG 7 1H2* DG 7 -3.798 9.877 21.963 74 H2'' DG 7 2H2* DG 7 -4.815 9.338 23.307 75 H1' DG 7 H1* DG 7 -5.926 7.692 21.982 76 H8 DG 7 H8 DG 7 -2.580 8.796 20.333 77 H1 DG 7 H1 DG 7 -3.361 2.379 20.952 78 H21 DG 7 1H2 DG 7 -6.407 3.361 22.224 79 H22 DG 7 2H2 DG 7 -5.328 2.004 21.833 80 H5' DA 8 1H5* DA 8 -8.447 8.542 23.644 81 H5'' DA 8 2H5* DA 8 -8.960 9.124 25.236 82 H4' DA 8 H4* DA 8 -8.759 6.642 25.132 83 H3' DA 8 H3* DA 8 -7.451 8.282 27.164 84 H2' DA 8 1H2* DA 8 -5.353 7.384 26.810 85 H2'' DA 8 2H2* DA 8 -5.989 5.974 27.672 86 H1' DA 8 H1* DA 8 -6.548 4.834 25.624 87 H8 DA 8 H8 DA 8 -4.036 7.630 24.702 88 H61 DA 8 2H6 DA 8 -0.328 4.480 23.425 89 H62 DA 8 1H6 DA 8 -0.197 2.726 23.496 90 H2 DA 8 H2 DA 8 -4.001 1.141 24.805 91 H5' DA 9 2H5* DA 9 -9.115 3.960 27.800 92 H5'' DA 9 1H5* DA 9 -9.549 3.711 29.494 93 H4' DA 9 H4* DA 9 -8.548 1.695 28.263 94 H3' DA 9 H3* DA 9 -7.939 2.593 30.953 95 H2' DA 9 1H2* DA 9 -5.661 2.746 30.653 96 H2'' DA 9 2H2* DA 9 -5.663 0.971 30.661 97 H1' DA 9 H1* DA 9 -5.638 0.826 28.290 98 H8 DA 9 H8 DA 9 -4.900 4.548 28.822 99 H61 DA 9 2H6 DA 9 -0.147 4.267 27.204 100 H62 DA 9 1H6 DA 9 0.894 2.893 26.812 101 H2 DA 9 H2 DA 9 -1.413 -0.735 27.470 102 H5' DT 10 2H5* DT 10 -7.028 -1.780 30.042 103 H5'' DT 10 1H5* DT 10 -7.336 -2.784 31.467 104 H4' DT 10 H4* DT 10 -5.128 -3.255 30.357 105 H3' DT 10 H3* DT 10 -5.400 -2.540 33.217 106 H2' DT 10 1H2* DT 10 -3.453 -1.334 33.310 107 H2'' DT 10 2H2* DT 10 -2.558 -2.798 32.847 108 H1' DT 10 H1* DT 10 -2.568 -2.306 30.567 109 H3 DT 10 H3 DT 10 0.570 0.877 30.284 110 H71 DT 10 3H7 DT 10 -3.531 3.038 33.018 111 H72 DT 10 1H7 DT 10 -3.427 3.802 31.409 112 H73 DT 10 2H7 DT 10 -2.095 3.971 32.556 113 H6 DT 10 H6 DT 10 -3.881 0.814 32.118 114 H5' DC 11 2H5* DC 11 -2.090 -5.773 32.517 115 H5'' DC 11 1H5* DC 11 -2.089 -6.732 34.006 116 H4' DC 11 H4* DC 11 0.199 -5.977 33.420 117 H3' DC 11 H3* DC 11 -1.066 -4.951 35.947 118 H2' DC 11 1H2* DC 11 0.382 -3.220 36.127 119 H2'' DC 11 2H2* DC 11 1.791 -4.234 35.745 120 H1' DC 11 H1* DC 11 1.778 -3.718 33.507 121 H41 DC 11 1H4 DC 11 -0.098 2.620 34.088 122 H42 DC 11 2H4 DC 11 1.580 2.566 33.557 123 H5 DC 11 H5 DC 11 -1.345 0.607 34.581 124 H6 DC 11 H6 DC 11 -1.234 -1.853 34.593 125 H5' DC 12 2H5* DC 12 3.290 -6.631 36.522 126 H5'' DC 12 1H5* DC 12 3.349 -7.181 38.208 127 H4' DC 12 H4* DC 12 5.276 -5.650 37.627 128 H3' DC 12 H3* DC 12 3.255 -4.852 39.724 129 HO3' DC 12 H3T DC 12 4.960 -5.376 41.058 130 H2' DC 12 1H2* DC 12 4.001 -2.666 39.864 131 H2'' DC 12 2H2* DC 12 5.677 -3.109 39.493 132 H1' DC 12 H1* DC 12 5.424 -2.583 37.302 133 H41 DC 12 1H4 DC 12 -0.061 1.135 37.498 134 H42 DC 12 2H4 DC 12 1.328 2.142 37.048 135 H5 DC 12 H5 DC 12 0.198 -1.219 38.024 136 H6 DC 12 H6 DC 12 1.816 -3.055 38.130 137 H5' DG 13 2H5* DG 13 9.029 10.278 35.936 138 H5'' DG 13 1H5* DG 13 8.762 11.023 34.361 139 H4' DG 13 H4* DG 13 9.211 8.433 34.467 140 H3' DG 13 H3* DG 13 7.490 9.925 32.654 141 H2' DG 13 1H2* DG 13 5.533 8.880 33.397 142 H2'' DG 13 2H2* DG 13 6.063 7.612 32.269 143 H1' DG 13 H1* DG 13 7.242 6.414 34.052 144 H8 DG 13 H8 DG 13 4.141 8.466 35.187 145 H1 DG 13 H1 DG 13 3.869 2.081 36.430 146 H21 DG 13 1H2 DG 13 7.092 2.176 35.216 147 H22 DG 13 2H2 DG 13 5.827 1.179 35.962 148 HO5' DG 13 H5T DG 13 6.650 10.020 35.966 149 H5' DG 14 2H5* DG 14 11.505 6.693 30.051 150 H5'' DG 14 1H5* DG 14 9.764 6.456 30.212 151 H4' DG 14 H4* DG 14 11.883 4.842 31.716 152 H3' DG 14 H3* DG 14 11.177 4.479 29.061 153 H2' DG 14 1H2* DG 14 8.830 4.275 29.434 154 H2'' DG 14 2H2* DG 14 9.292 2.558 29.488 155 H1' DG 14 H1* DG 14 9.324 2.509 31.859 156 H8 DG 14 H8 DG 14 7.548 5.858 31.317 157 H1 DG 14 H1 DG 14 3.592 0.965 33.017 158 H21 DG 14 1H2 DG 14 6.444 -0.883 32.599 159 H22 DG 14 2H2 DG 14 4.716 -0.906 32.982 160 H5' DA 15 2H5* DA 15 10.914 0.214 30.596 161 H5'' DA 15 1H5* DA 15 11.734 -0.806 29.406 162 H4' DA 15 H4* DA 15 9.528 -1.717 29.949 163 H3' DA 15 H3* DA 15 10.221 -1.076 27.203 164 H2' DA 15 1H2* DA 15 8.335 0.297 26.906 165 H2'' DA 15 2H2* DA 15 7.494 -1.258 26.693 166 H1' DA 15 H1* DA 15 6.895 -1.351 29.040 167 H8 DA 15 H8 DA 15 7.510 2.347 28.073 168 H61 DA 15 2H6 DA 15 2.860 3.863 29.361 169 H62 DA 15 1H6 DA 15 1.495 2.973 30.033 170 H2 DA 15 H2 DA 15 2.544 -1.215 30.231 171 H5' DT 16 2H5* DT 16 7.206 -4.792 27.923 172 H5'' DT 16 1H5* DT 16 7.265 -5.765 26.445 173 H4' DT 16 H4* DT 16 4.947 -5.295 27.364 174 H3' DT 16 H3* DT 16 5.745 -4.856 24.533 175 H2' DT 16 1H2* DT 16 4.423 -2.997 24.286 176 H2'' DT 16 2H2* DT 16 3.003 -4.002 24.634 177 H1' DT 16 H1* DT 16 3.015 -3.527 26.928 178 H3 DT 16 H3 DT 16 1.094 0.542 26.840 179 H71 DT 16 3H7 DT 16 4.705 2.311 24.418 180 H72 DT 16 1H7 DT 16 5.891 0.996 24.373 181 H73 DT 16 2H7 DT 16 5.775 2.064 25.797 182 H6 DT 16 H6 DT 16 5.417 -1.085 25.468 183 H5' DT 17 1H5* DT 17 1.643 -6.858 25.647 184 H5'' DT 17 2H5* DT 17 1.064 -7.808 24.270 185 H4' DT 17 H4* DT 17 -0.714 -6.366 25.304 186 H3' DT 17 H3* DT 17 0.093 -5.842 22.427 187 H2' DT 17 1H2* DT 17 -1.370 -3.994 22.372 188 H2'' DT 17 2H2* DT 17 -2.456 -4.716 23.574 189 H1' DT 17 H1* DT 17 -1.510 -3.641 25.289 190 H3 DT 17 H3 DT 17 -1.169 0.712 24.156 191 H71 DT 17 3H7 DT 17 3.466 -0.611 22.972 192 H72 DT 17 1H7 DT 17 2.992 -1.941 21.885 193 H73 DT 17 2H7 DT 17 2.590 -0.260 21.478 194 H6 DT 17 H6 DT 17 1.435 -3.205 23.099 195 H5' DC 18 1H5* DC 18 -4.291 -6.301 23.063 196 H5'' DC 18 2H5* DC 18 -5.103 -6.802 21.578 197 H4' DC 18 H4* DC 18 -5.846 -4.588 22.759 198 H3' DC 18 H3* DC 18 -5.666 -5.113 19.881 199 H2' DC 18 1H2* DC 18 -4.634 -3.139 19.333 200 H2'' DC 18 2H2* DC 18 -6.122 -2.320 19.842 201 H1' DC 18 H1* DC 18 -5.306 -1.882 22.022 202 H41 DC 18 1H4 DC 18 0.016 0.711 19.184 203 H42 DC 18 2H4 DC 18 -0.726 1.888 20.219 204 H5 DC 18 H5 DC 18 -0.463 -1.699 19.519 205 H6 DC 18 H6 DC 18 -2.321 -3.163 20.190 206 H5' DA 19 1H5* DA 19 -8.410 -5.698 17.176 207 H5'' DA 19 2H5* DA 19 -6.769 -5.504 17.812 208 H4' DA 19 H4* DA 19 -8.124 -3.153 16.454 209 H3' DA 19 H3* DA 19 -7.137 -5.623 15.087 210 H2' DA 19 1H2* DA 19 -5.323 -4.632 14.213 211 H2'' DA 19 2H2* DA 19 -6.312 -3.361 13.459 212 H1' DA 19 H1* DA 19 -6.041 -1.866 15.213 213 H8 DA 19 H8 DA 19 -3.476 -4.349 16.628 214 H61 DA 19 2H6 DA 19 0.552 -1.578 15.275 215 H62 DA 19 1H6 DA 19 0.650 -0.081 14.332 216 H2 DA 19 H2 DA 19 -3.289 1.089 13.086 217 H5' DT 20 1H5* DT 20 -9.130 -2.155 12.730 218 H5'' DT 20 2H5* DT 20 -9.897 -2.826 11.280 219 H4' DT 20 H4* DT 20 -8.678 -0.633 10.890 220 H3' DT 20 H3* DT 20 -8.251 -3.112 9.333 221 H2' DT 20 1H2* DT 20 -6.012 -2.839 9.023 222 H2'' DT 20 2H2* DT 20 -6.322 -1.271 8.248 223 H1' DT 20 H1* DT 20 -5.954 -0.041 10.154 224 H3 DT 20 H3 DT 20 -1.459 -0.543 10.389 225 H71 DT 20 3H7 DT 20 -3.689 -4.818 12.809 226 H72 DT 20 1H7 DT 20 -2.703 -5.313 11.417 227 H73 DT 20 2H7 DT 20 -1.950 -4.523 12.813 228 H6 DT 20 H6 DT 20 -5.172 -3.405 11.499 229 H5' DG 21 2H5* DG 21 -8.317 1.012 6.942 230 H5'' DG 21 1H5* DG 21 -8.840 0.599 5.298 231 H4' DG 21 H4* DG 21 -6.874 2.148 5.303 232 H3' DG 21 H3* DG 21 -6.626 -0.599 4.104 233 H2' DG 21 1H2* DG 21 -4.334 -0.458 3.932 234 H2'' DG 21 2H2* DG 21 -4.354 1.285 3.611 235 H1' DG 21 H1* DG 21 -3.865 1.765 5.776 236 H8 DG 21 H8 DG 21 -4.955 -1.818 6.544 237 H1 DG 21 H1 DG 21 1.460 -0.773 6.900 238 H21 DG 21 1H2 DG 21 0.578 2.187 5.424 239 H22 DG 21 2H2 DG 21 1.906 1.123 5.913 240 H5' DC 22 2H5* DC 22 -4.929 2.695 1.387 241 H5'' DC 22 1H5* DC 22 -5.177 2.130 -0.274 242 H4' DC 22 H4* DC 22 -2.788 2.796 0.218 243 H3' DC 22 H3* DC 22 -3.461 -0.008 -0.661 244 H2' DC 22 1H2* DC 22 -1.249 -0.717 -0.346 245 H2'' DC 22 2H2* DC 22 -0.583 0.902 -0.613 246 H1' DC 22 H1* DC 22 -0.446 1.220 1.624 247 H41 DC 22 1H4 DC 22 -1.938 -4.215 4.942 248 H42 DC 22 2H4 DC 22 -0.188 -3.983 5.062 249 H5 DC 22 H5 DC 22 -3.289 -3.035 3.356 250 H6 DC 22 H6 DC 22 -3.341 -1.090 1.872 251 H5' DG 23 2H5* DG 23 -0.034 1.671 -3.344 252 H5'' DG 23 1H5* DG 23 -0.428 0.975 -4.926 253 H4' DG 23 H4* DG 23 1.922 0.454 -4.301 254 H3' DG 23 H3* DG 23 -0.033 -1.885 -4.382 255 HO3' DG 23 H3T DG 23 0.494 -1.078 -6.389 256 H2' DG 23 1H2* DG 23 1.733 -3.374 -3.795 257 H2'' DG 23 2H2* DG 23 2.979 -2.178 -4.224 258 H1' DG 23 H1* DG 23 3.016 -1.667 -1.970 259 H8 DG 23 H8 DG 23 -0.858 -2.267 -2.091 260 H1 DG 23 H1 DG 23 2.499 -5.687 2.326 261 H21 DG 23 1H2 DG 23 5.169 -3.999 1.007 262 H22 DG 23 2H2 DG 23 4.638 -5.323 2.045