PDB Short entry for 1A2N HEADER TRANSFERASE 06-JAN-98 1A2N TITLE STRUCTURE OF THE C115A MUTANT OF MURA COMPLEXED WITH THE FLUORINATED TITLE 2 ANALOG OF THE REACTION TETRAHEDRAL INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MURA; COMPND 5 EC: 2.5.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: LIGAND IS THE FLUORINATED ANALOG OF THE REACTION COMPND 9 TETRAHEDRAL INTERMEDIATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, PEPTIDOGLYCAN SYNTHESIS, ENOLPYRUVYL TRANSFERASE, UDP-N- KEYWDS 2 ACETYLGLUCOSAMINE EXPDTA X-RAY DIFFRACTION AUTHOR T.SKARZYNSKI REVDAT 5 02-AUG-23 1A2N 1 REMARK REVDAT 4 03-NOV-21 1A2N 1 REMARK SEQADV REVDAT 3 14-AUG-19 1A2N 1 REMARK REVDAT 2 24-FEB-09 1A2N 1 VERSN REVDAT 1 29-APR-98 1A2N 0 JRNL AUTH T.SKARZYNSKI,D.H.KIM,W.J.LEES,C.T.WALSH,K.DUNCAN JRNL TITL STEREOCHEMICAL COURSE OF ENZYMATIC ENOLPYRUVYL TRANSFER AND JRNL TITL 2 CATALYTIC CONFORMATION OF THE ACTIVE SITE REVEALED BY THE JRNL TITL 3 CRYSTAL STRUCTURE OF THE FLUORINATED ANALOGUE OF THE JRNL TITL 4 REACTION TETRAHEDRAL INTERMEDIATE BOUND TO THE ACTIVE SITE JRNL TITL 5 OF THE C115A MUTANT OF MURA JRNL REF BIOCHEMISTRY V. 37 2572 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9485407 JRNL DOI 10.1021/BI9722608 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SKARZYNSKI,A.MISTRY,A.WONACOTT,S.E.HUTCHINSON,V.A.KELLY, REMARK 1 AUTH 2 K.DUNCAN REMARK 1 TITL STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL REMARK 1 TITL 2 TRANSFERASE, AN ENZYME ESSENTIAL FOR THE SYNTHESIS OF REMARK 1 TITL 3 BACTERIAL PEPTIDOGLYCAN, COMPLEXED WITH SUBSTRATE REMARK 1 TITL 4 UDP-N-ACETYLGLUCOSAMINE AND THE DRUG FOSFOMYCIN REMARK 1 REF STRUCTURE V. 4 1465 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1UAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 40% TERT REMARK 280 -BUTANOL, 100 MM CACL2, 100 MM TRIS-HCL, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 111.15000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 55.57500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.25872 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 467 O HOH A 643 1554 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 279 CE2 TRP A 279 CD2 0.087 REMARK 500 GLU A 346 CA GLU A 346 CB 0.155 REMARK 500 GLU A 346 CB GLU A 346 CG 0.144 REMARK 500 GLU A 346 CG GLU A 346 CD 0.148 REMARK 500 HIS A 355 CG HIS A 355 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 39 CG1 - CB - CG2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 66 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ASN A 67 N - CA - CB ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG A 91 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 91 CD - NE - CZ ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 120 CD - NE - CZ ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU A 132 CB - CG - CD1 ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ILE A 191 CA - CB - CG1 ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 226 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 340 CD - NE - CZ ANGL. DEV. = -8.6 DEGREES REMARK 500 GLU A 346 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 GLU A 346 OE1 - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 GLU A 346 CG - CD - OE1 ANGL. DEV. = 13.0 DEGREES REMARK 500 CYS A 354 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 MET A 366 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 401 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 407 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -57.12 -28.47 REMARK 500 ASN A 67 -99.44 175.08 REMARK 500 TYR A 84 -37.86 -37.42 REMARK 500 THR A 116 -53.65 -139.82 REMARK 500 ASP A 123 -15.99 -36.56 REMARK 500 ASN A 184 31.49 70.62 REMARK 500 GLU A 188 155.39 -49.25 REMARK 500 ALA A 297 173.57 174.32 REMARK 500 ALA A 301 -167.81 -74.92 REMARK 500 ASN A 330 55.26 -147.87 REMARK 500 SER A 349 -135.54 52.31 REMARK 500 LYS A 417 -77.27 -21.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 120 0.11 SIDE CHAIN REMARK 500 ARG A 187 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TET A 420 DBREF 1A2N A 1 419 UNP P0A749 MURA_ECOLI 1 419 SEQADV 1A2N ALA A 115 UNP P0A749 CYS 115 ENGINEERED MUTATION SEQRES 1 A 419 MET ASP LYS PHE ARG VAL GLN GLY PRO THR LYS LEU GLN SEQRES 2 A 419 GLY GLU VAL THR ILE SER GLY ALA LYS ASN ALA ALA LEU SEQRES 3 A 419 PRO ILE LEU PHE ALA ALA LEU LEU ALA GLU GLU PRO VAL SEQRES 4 A 419 GLU ILE GLN ASN VAL PRO LYS LEU LYS ASP VAL ASP THR SEQRES 5 A 419 SER MET LYS LEU LEU SER GLN LEU GLY ALA LYS VAL GLU SEQRES 6 A 419 ARG ASN GLY SER VAL HIS ILE ASP ALA ARG ASP VAL ASN SEQRES 7 A 419 VAL PHE CYS ALA PRO TYR ASP LEU VAL LYS THR MET ARG SEQRES 8 A 419 ALA SER ILE TRP ALA LEU GLY PRO LEU VAL ALA ARG PHE SEQRES 9 A 419 GLY GLN GLY GLN VAL SER LEU PRO GLY GLY ALA THR ILE SEQRES 10 A 419 GLY ALA ARG PRO VAL ASP LEU HIS ILE SER GLY LEU GLU SEQRES 11 A 419 GLN LEU GLY ALA THR ILE LYS LEU GLU GLU GLY TYR VAL SEQRES 12 A 419 LYS ALA SER VAL ASP GLY ARG LEU LYS GLY ALA HIS ILE SEQRES 13 A 419 VAL MET ASP LYS VAL SER VAL GLY ALA THR VAL THR ILE SEQRES 14 A 419 MET CYS ALA ALA THR LEU ALA GLU GLY THR THR ILE ILE SEQRES 15 A 419 GLU ASN ALA ALA ARG GLU PRO GLU ILE VAL ASP THR ALA SEQRES 16 A 419 ASN PHE LEU ILE THR LEU GLY ALA LYS ILE SER GLY GLN SEQRES 17 A 419 GLY THR ASP ARG ILE VAL ILE GLU GLY VAL GLU ARG LEU SEQRES 18 A 419 GLY GLY GLY VAL TYR ARG VAL LEU PRO ASP ARG ILE GLU SEQRES 19 A 419 THR GLY THR PHE LEU VAL ALA ALA ALA ILE SER ARG GLY SEQRES 20 A 419 LYS ILE ILE CYS ARG ASN ALA GLN PRO ASP THR LEU ASP SEQRES 21 A 419 ALA VAL LEU ALA LYS LEU ARG ASP ALA GLY ALA ASP ILE SEQRES 22 A 419 GLU VAL GLY GLU ASP TRP ILE SER LEU ASP MET HIS GLY SEQRES 23 A 419 LYS ARG PRO LYS ALA VAL ASN VAL ARG THR ALA PRO HIS SEQRES 24 A 419 PRO ALA PHE PRO THR ASP MET GLN ALA GLN PHE THR LEU SEQRES 25 A 419 LEU ASN LEU VAL ALA GLU GLY THR GLY PHE ILE THR GLU SEQRES 26 A 419 THR VAL PHE GLU ASN ARG PHE MET HIS VAL PRO GLU LEU SEQRES 27 A 419 SER ARG MET GLY ALA HIS ALA GLU ILE GLU SER ASN THR SEQRES 28 A 419 VAL ILE CYS HIS GLY VAL GLU LYS LEU SER GLY ALA GLN SEQRES 29 A 419 VAL MET ALA THR ASP LEU ARG ALA SER ALA SER LEU VAL SEQRES 30 A 419 LEU ALA GLY CYS ILE ALA GLU GLY THR THR VAL VAL ASP SEQRES 31 A 419 ARG ILE TYR HIS ILE ASP ARG GLY TYR GLU ARG ILE GLU SEQRES 32 A 419 ASP LYS LEU ARG ALA LEU GLY ALA ASN ILE GLU ARG VAL SEQRES 33 A 419 LYS GLY GLU HET TET A 420 50 HETNAM TET URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL-3-FLUORO-2- HETNAM 2 TET PHOSPHONOOXY)PROPIONIC ACID FORMUL 2 TET C20 H31 F N3 O23 P3 FORMUL 3 HOH *271(H2 O) HELIX 1 1 LYS A 22 LEU A 34 1 13 HELIX 2 2 LYS A 48 GLN A 59 1 12 HELIX 3 3 TYR A 84 VAL A 87 1 4 HELIX 4 4 ARG A 91 PHE A 104 5 14 HELIX 5 5 ASP A 123 GLN A 131 1 9 HELIX 6 6 VAL A 163 LEU A 175 1 13 HELIX 7 7 PRO A 189 LEU A 201 1 13 HELIX 8 8 ARG A 232 ILE A 244 1 13 HELIX 9 9 PRO A 256 THR A 258 5 3 HELIX 10 10 ASP A 260 ALA A 269 1 10 HELIX 11 11 THR A 304 VAL A 316 5 13 HELIX 12 12 VAL A 335 MET A 341 1 7 HELIX 13 13 LEU A 370 ILE A 382 1 13 HELIX 14 14 ILE A 392 ARG A 397 5 6 HELIX 15 15 ILE A 402 LEU A 409 1 8 SHEET 1 A 4 ILE A 413 VAL A 416 0 SHEET 2 A 4 LYS A 3 GLY A 8 -1 N ARG A 5 O GLU A 414 SHEET 3 A 4 GLY A 385 ASP A 390 -1 N VAL A 389 O PHE A 4 SHEET 4 A 4 GLN A 364 MET A 366 1 N VAL A 365 O VAL A 388 SHEET 1 B 4 GLY A 14 THR A 17 0 SHEET 2 B 4 LYS A 248 ARG A 252 1 N ILE A 250 O GLY A 14 SHEET 3 B 4 TRP A 279 ASP A 283 -1 N LEU A 282 O ILE A 249 SHEET 4 B 4 ASP A 272 GLY A 276 -1 N GLY A 276 O TRP A 279 SHEET 1 C 4 GLY A 224 ARG A 227 0 SHEET 2 C 4 VAL A 39 GLN A 42 1 N GLU A 40 O GLY A 224 SHEET 3 C 4 VAL A 70 ASP A 73 -1 N ILE A 72 O VAL A 39 SHEET 4 C 4 LYS A 63 ARG A 66 -1 N GLU A 65 O HIS A 71 SHEET 1 D 3 GLN A 106 SER A 110 0 SHEET 2 D 3 TYR A 142 SER A 146 -1 N ALA A 145 O GLY A 107 SHEET 3 D 3 THR A 135 GLU A 139 -1 N GLU A 139 O TYR A 142 SHEET 1 E 4 HIS A 155 VAL A 157 0 SHEET 2 E 4 THR A 179 GLU A 183 1 N ILE A 181 O ILE A 156 SHEET 3 E 4 ARG A 212 GLU A 216 -1 N ILE A 215 O THR A 180 SHEET 4 E 4 LYS A 204 SER A 206 -1 N SER A 206 O VAL A 214 SHEET 1 F 3 THR A 320 THR A 324 0 SHEET 2 F 3 THR A 351 HIS A 355 -1 N CYS A 354 O GLY A 321 SHEET 3 F 3 HIS A 344 GLU A 348 -1 N GLU A 348 O THR A 351 CISPEP 1 GLY A 8 PRO A 9 0 0.10 CISPEP 2 HIS A 299 PRO A 300 0 15.02 SITE 1 AC1 29 LYS A 22 ASN A 23 ARG A 91 TRP A 95 SITE 2 AC1 29 ARG A 120 PRO A 121 VAL A 122 ASP A 123 SITE 3 AC1 29 LEU A 124 HIS A 125 SER A 162 VAL A 163 SITE 4 AC1 29 GLY A 164 THR A 304 ASP A 305 VAL A 327 SITE 5 AC1 29 PHE A 328 ARG A 331 LEU A 370 ARG A 371 SITE 6 AC1 29 ARG A 397 HOH A 436 HOH A 509 HOH A 510 SITE 7 AC1 29 HOH A 511 HOH A 513 HOH A 518 HOH A 537 SITE 8 AC1 29 HOH A 555 CRYST1 111.150 111.150 67.510 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008997 0.005194 0.000000 0.00000 SCALE2 0.000000 0.010389 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014813 0.00000