PDB Short entry for 1AJ3 HEADER CYTOSKELETON 14-MAY-97 1AJ3 TITLE SOLUTION STRUCTURE OF THE SPECTRIN REPEAT, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA SPECTRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 16TH REPEAT, RESIDUES 1772 - 1869; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: BRAIN; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3D KEYWDS ELASTICITY, MEMBRANE SKELETON, SPECTRIN, COILED-COIL, CYTOSKELETON, KEYWDS 2 CALMODULIN-BINDING, ACTIN-BINDING, CAPPING PROTEIN, CALCIUM-BINDING, KEYWDS 3 DUPLICATION, SH3 DOMAIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.PASCUAL,M.PFUHL,D.WALTHER,M.SARASTE,M.NILGES REVDAT 3 16-FEB-22 1AJ3 1 REMARK REVDAT 2 24-FEB-09 1AJ3 1 VERSN REVDAT 1 07-JUL-97 1AJ3 0 JRNL AUTH J.PASCUAL,M.PFUHL,D.WALTHER,M.SARASTE,M.NILGES JRNL TITL SOLUTION STRUCTURE OF THE SPECTRIN REPEAT: A LEFT-HANDED JRNL TITL 2 ANTIPARALLEL TRIPLE-HELICAL COILED-COIL. JRNL REF J.MOL.BIOL. V. 273 740 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9356261 JRNL DOI 10.1006/JMBI.1997.1344 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : A. BRUNGER, M. NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AMBIGUOUS RESTRAINTS FOR ITERATIVE REMARK 3 ASSIGNMENT METHOD (ARIA) DIRECT REFINEMENT AGAINST 1H-CHEMICAL REMARK 3 SHIFTS REMARK 4 REMARK 4 1AJ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170878. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HN(CO)CA; HNCO; HN (CA)CO; REMARK 210 HCCH-COSY; HCCH-TOCSY; 15N; 13C REMARK 210 HSQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY, GEOMETRY, VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 108 REMARK 465 LEU A 109 REMARK 465 GLU A 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 PHE A 91 CE1 PHE A 91 CZ 0.117 REMARK 500 18 PHE A 91 CE1 PHE A 91 CZ 0.157 REMARK 500 18 PHE A 91 CZ PHE A 91 CE2 -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 34 -45.66 -133.90 REMARK 500 1 ARG A 37 118.70 71.32 REMARK 500 1 ASN A 77 -59.00 -153.10 REMARK 500 1 THR A 78 -70.33 70.85 REMARK 500 1 ILE A 79 93.11 -57.72 REMARK 500 2 GLU A 33 -49.35 135.95 REMARK 500 2 LEU A 39 42.48 88.51 REMARK 500 3 ASP A 34 129.54 66.85 REMARK 500 3 ARG A 37 54.33 24.01 REMARK 500 3 THR A 78 -73.89 -58.10 REMARK 500 4 TYR A 35 -12.29 72.71 REMARK 500 4 THR A 40 29.31 -153.07 REMARK 500 4 ASN A 77 37.86 79.01 REMARK 500 5 LEU A 39 30.57 87.68 REMARK 500 5 ASP A 76 -37.15 145.57 REMARK 500 5 THR A 78 108.83 64.26 REMARK 500 6 ARG A 37 -74.49 -162.06 REMARK 500 6 ASP A 38 19.24 45.79 REMARK 500 6 LEU A 39 17.91 52.78 REMARK 500 6 THR A 40 54.26 -168.05 REMARK 500 6 ILE A 79 59.89 -92.01 REMARK 500 7 GLU A 33 29.44 -77.13 REMARK 500 7 TYR A 35 -15.85 -176.52 REMARK 500 7 ARG A 37 -39.65 -29.20 REMARK 500 7 ASP A 38 28.18 44.19 REMARK 500 7 LEU A 39 23.44 49.18 REMARK 500 7 THR A 40 86.18 -171.12 REMARK 500 7 ASN A 77 59.60 77.29 REMARK 500 7 ILE A 79 96.37 -66.41 REMARK 500 8 ASP A 34 17.53 56.12 REMARK 500 8 ARG A 37 88.02 56.09 REMARK 500 8 THR A 78 -65.23 73.86 REMARK 500 9 ARG A 37 85.45 -153.63 REMARK 500 9 ASP A 38 -74.73 -19.69 REMARK 500 9 THR A 40 55.89 -140.66 REMARK 500 10 TYR A 35 -66.61 -163.71 REMARK 500 10 LEU A 39 18.25 -69.90 REMARK 500 10 THR A 40 13.23 -152.87 REMARK 500 10 ASN A 77 87.58 -158.11 REMARK 500 10 ILE A 79 -63.58 -141.03 REMARK 500 11 GLU A 33 -66.41 73.39 REMARK 500 11 ASP A 34 -79.39 -147.97 REMARK 500 11 ARG A 37 -53.01 -174.99 REMARK 500 11 ASP A 38 4.39 58.84 REMARK 500 11 THR A 40 99.10 -169.96 REMARK 500 11 ASN A 77 -32.23 179.82 REMARK 500 11 ILE A 79 91.92 -63.03 REMARK 500 12 TYR A 35 -99.87 29.51 REMARK 500 12 ASP A 38 31.98 -87.62 REMARK 500 12 LEU A 39 -18.74 -143.38 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1AJ3 A 1 110 UNP P07751 SPTA2_CHICK 1763 1872 SEQRES 1 A 110 ALA LYS LEU ASN GLU SER HIS ARG LEU HIS GLN PHE PHE SEQRES 2 A 110 ARG ASP MET ASP ASP GLU GLU SER TRP ILE LYS GLU LYS SEQRES 3 A 110 LYS LEU LEU VAL SER SER GLU ASP TYR GLY ARG ASP LEU SEQRES 4 A 110 THR GLY VAL GLN ASN LEU ARG LYS LYS HIS LYS ARG LEU SEQRES 5 A 110 GLU ALA GLU LEU ALA ALA HIS GLU PRO ALA ILE GLN GLY SEQRES 6 A 110 VAL LEU ASP THR GLY LYS LYS LEU SER ASP ASP ASN THR SEQRES 7 A 110 ILE GLY LYS GLU GLU ILE GLN GLN ARG LEU ALA GLN PHE SEQRES 8 A 110 VAL ASP HIS TRP LYS GLU LEU LYS GLN LEU ALA ALA ALA SEQRES 9 A 110 ARG GLY GLN ARG LEU GLU HELIX 1 1 GLN A 11 SER A 32 1 22 HELIX 2 2 ASP A 38 ASP A 76 1 39 HELIX 3 3 LYS A 81 ARG A 105 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000