PDB Short entry for 1APY HEADER HYDROLASE 14-JUN-95 1APY TITLE HUMAN ASPARTYLGLUCOSAMINIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: AGA, GLYCOSYLASPARAGINASE; COMPND 5 EC: 3.5.1.26; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ASPARTYLGLUCOSAMINIDASE; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: AGA, GLYCOSYLASPARAGINASE; COMPND 10 EC: 3.5.1.26 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: LEUKOCYTE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 CELL: LEUKOCYTE KEYWDS ASPARTYLGLUCOSAMINIDASE, GLYCOSYLASPARAGINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ROUVINEN,C.OINONEN REVDAT 4 29-JUL-20 1APY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1APY 1 VERSN REVDAT 2 24-FEB-09 1APY 1 VERSN REVDAT 1 23-DEC-96 1APY 0 JRNL AUTH C.OINONEN,R.TIKKANEN,J.ROUVINEN,L.PELTONEN JRNL TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN LYSOSOMAL JRNL TITL 2 ASPARTYLGLUCOSAMINIDASE. JRNL REF NAT.STRUCT.BIOL. V. 2 1102 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 8846222 JRNL DOI 10.1038/NSB1295-1102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.TIKKANEN,J.ROUVINEN,A.TORRONEN,N.KALKKINEN,L.PELTONEN REMARK 1 TITL LARGE-SCALE PURIFICATION AND PRELIMINARY X-RAY DIFFRACTION REMARK 1 TITL 2 STUDIES OF HUMAN ASPARTYLGLUCOSAMINIDASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3779 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1APY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37933 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06510 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.83333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.66667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.08333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG E 2 O5 BMA E 3 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 11 163.70 65.40 REMARK 500 PRO A 12 40.55 -73.91 REMARK 500 ASP A 47 12.24 55.17 REMARK 500 SER A 55 59.11 36.47 REMARK 500 MET A 74 31.60 71.60 REMARK 500 ALA B 220 -67.87 -105.96 REMARK 500 ALA B 228 -53.22 -133.45 REMARK 500 LEU B 244 60.50 38.43 REMARK 500 ASN B 313 49.65 -102.07 REMARK 500 GLN B 314 142.28 -171.74 REMARK 500 TRP C 11 154.46 65.95 REMARK 500 ASP C 47 18.13 59.88 REMARK 500 ASP C 57 -167.75 -78.95 REMARK 500 LYS C 154 -33.49 -136.17 REMARK 500 ALA D 220 -74.76 -98.75 REMARK 500 ALA D 228 -50.26 -127.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: B1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: A CATALYTIC RESIDUE. REMARK 800 REMARK 800 SITE_IDENTIFIER: D1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: A CATALYTIC RESIDUE. DBREF 1APY A 1 162 UNP P20933 ASPG_HUMAN 24 185 DBREF 1APY B 183 323 UNP P20933 ASPG_HUMAN 206 346 DBREF 1APY C 1 162 UNP P20933 ASPG_HUMAN 24 185 DBREF 1APY D 183 323 UNP P20933 ASPG_HUMAN 206 346 SEQRES 1 A 162 SER SER PRO LEU PRO LEU VAL VAL ASN THR TRP PRO PHE SEQRES 2 A 162 LYS ASN ALA THR GLU ALA ALA TRP ARG ALA LEU ALA SER SEQRES 3 A 162 GLY GLY SER ALA LEU ASP ALA VAL GLU SER GLY CYS ALA SEQRES 4 A 162 MET CYS GLU ARG GLU GLN CYS ASP GLY SER VAL GLY PHE SEQRES 5 A 162 GLY GLY SER PRO ASP GLU LEU GLY GLU THR THR LEU ASP SEQRES 6 A 162 ALA MET ILE MET ASP GLY THR THR MET ASP VAL GLY ALA SEQRES 7 A 162 VAL GLY ASP LEU ARG ARG ILE LYS ASN ALA ILE GLY VAL SEQRES 8 A 162 ALA ARG LYS VAL LEU GLU HIS THR THR HIS THR LEU LEU SEQRES 9 A 162 VAL GLY GLU SER ALA THR THR PHE ALA GLN SER MET GLY SEQRES 10 A 162 PHE ILE ASN GLU ASP LEU SER THR SER ALA SER GLN ALA SEQRES 11 A 162 LEU HIS SER ASP TRP LEU ALA ARG ASN CYS GLN PRO ASN SEQRES 12 A 162 TYR TRP ARG ASN VAL ILE PRO ASP PRO SER LYS TYR CYS SEQRES 13 A 162 GLY PRO TYR LYS PRO PRO SEQRES 1 B 141 THR ILE GLY MET VAL VAL ILE HIS LYS THR GLY HIS ILE SEQRES 2 B 141 ALA ALA GLY THR SER THR ASN GLY ILE LYS PHE LYS ILE SEQRES 3 B 141 HIS GLY ARG VAL GLY ASP SER PRO ILE PRO GLY ALA GLY SEQRES 4 B 141 ALA TYR ALA ASP ASP THR ALA GLY ALA ALA ALA ALA THR SEQRES 5 B 141 GLY ASN GLY ASP ILE LEU MET ARG PHE LEU PRO SER TYR SEQRES 6 B 141 GLN ALA VAL GLU TYR MET ARG ARG GLY GLU ASP PRO THR SEQRES 7 B 141 ILE ALA CYS GLN LYS VAL ILE SER ARG ILE GLN LYS HIS SEQRES 8 B 141 PHE PRO GLU PHE PHE GLY ALA VAL ILE CYS ALA ASN VAL SEQRES 9 B 141 THR GLY SER TYR GLY ALA ALA CYS ASN LYS LEU SER THR SEQRES 10 B 141 PHE THR GLN PHE SER PHE MET VAL TYR ASN SER GLU LYS SEQRES 11 B 141 ASN GLN PRO THR GLU GLU LYS VAL ASP CYS ILE SEQRES 1 C 162 SER SER PRO LEU PRO LEU VAL VAL ASN THR TRP PRO PHE SEQRES 2 C 162 LYS ASN ALA THR GLU ALA ALA TRP ARG ALA LEU ALA SER SEQRES 3 C 162 GLY GLY SER ALA LEU ASP ALA VAL GLU SER GLY CYS ALA SEQRES 4 C 162 MET CYS GLU ARG GLU GLN CYS ASP GLY SER VAL GLY PHE SEQRES 5 C 162 GLY GLY SER PRO ASP GLU LEU GLY GLU THR THR LEU ASP SEQRES 6 C 162 ALA MET ILE MET ASP GLY THR THR MET ASP VAL GLY ALA SEQRES 7 C 162 VAL GLY ASP LEU ARG ARG ILE LYS ASN ALA ILE GLY VAL SEQRES 8 C 162 ALA ARG LYS VAL LEU GLU HIS THR THR HIS THR LEU LEU SEQRES 9 C 162 VAL GLY GLU SER ALA THR THR PHE ALA GLN SER MET GLY SEQRES 10 C 162 PHE ILE ASN GLU ASP LEU SER THR SER ALA SER GLN ALA SEQRES 11 C 162 LEU HIS SER ASP TRP LEU ALA ARG ASN CYS GLN PRO ASN SEQRES 12 C 162 TYR TRP ARG ASN VAL ILE PRO ASP PRO SER LYS TYR CYS SEQRES 13 C 162 GLY PRO TYR LYS PRO PRO SEQRES 1 D 141 THR ILE GLY MET VAL VAL ILE HIS LYS THR GLY HIS ILE SEQRES 2 D 141 ALA ALA GLY THR SER THR ASN GLY ILE LYS PHE LYS ILE SEQRES 3 D 141 HIS GLY ARG VAL GLY ASP SER PRO ILE PRO GLY ALA GLY SEQRES 4 D 141 ALA TYR ALA ASP ASP THR ALA GLY ALA ALA ALA ALA THR SEQRES 5 D 141 GLY ASN GLY ASP ILE LEU MET ARG PHE LEU PRO SER TYR SEQRES 6 D 141 GLN ALA VAL GLU TYR MET ARG ARG GLY GLU ASP PRO THR SEQRES 7 D 141 ILE ALA CYS GLN LYS VAL ILE SER ARG ILE GLN LYS HIS SEQRES 8 D 141 PHE PRO GLU PHE PHE GLY ALA VAL ILE CYS ALA ASN VAL SEQRES 9 D 141 THR GLY SER TYR GLY ALA ALA CYS ASN LYS LEU SER THR SEQRES 10 D 141 PHE THR GLN PHE SER PHE MET VAL TYR ASN SER GLU LYS SEQRES 11 D 141 ASN GLN PRO THR GLU GLU LYS VAL ASP CYS ILE MODRES 1APY ASN A 15 ASN GLYCOSYLATION SITE MODRES 1APY ASN B 285 ASN GLYCOSYLATION SITE MODRES 1APY ASN C 15 ASN GLYCOSYLATION SITE MODRES 1APY ASN D 285 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG A 501 14 HET NAG B 511 14 HET NAG C 521 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 5 NAG 5(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 9 HOH *237(H2 O) HELIX 1 1 LYS A 14 ALA A 25 1 12 HELIX 2 2 ALA A 30 GLU A 44 1 15 HELIX 3 3 CYS A 46 GLY A 48 5 3 HELIX 4 4 ALA A 88 HIS A 98 1 11 HELIX 5 5 GLY A 106 SER A 115 1 10 HELIX 6 6 SER A 126 ALA A 137 1 12 HELIX 7 7 GLY B 237 ARG B 242 1 6 HELIX 8 8 PRO B 245 ARG B 255 1 11 HELIX 9 9 PRO B 259 HIS B 273 1 15 HELIX 10 10 LYS C 14 ALA C 25 1 12 HELIX 11 11 ALA C 30 ARG C 43 1 14 HELIX 12 12 CYS C 46 GLY C 48 5 3 HELIX 13 13 ALA C 88 HIS C 98 1 11 HELIX 14 14 GLY C 106 SER C 115 1 10 HELIX 15 15 SER C 126 ALA C 137 1 12 HELIX 16 16 GLY D 237 ARG D 242 1 6 HELIX 17 17 PRO D 245 ARG D 254 1 10 HELIX 18 18 PRO D 259 GLN D 271 1 13 SHEET 1 A 8 THR B 316 ASP B 321 0 SHEET 2 A 8 GLN B 302 TYR B 308 -1 N VAL B 307 O THR B 316 SHEET 3 A 8 LEU A 6 THR A 10 -1 N ASN A 9 O MET B 306 SHEET 4 A 8 ILE B 184 ILE B 189 -1 N ILE B 189 O LEU A 6 SHEET 5 A 8 ILE B 195 THR B 201 -1 N SER B 200 O ILE B 184 SHEET 6 A 8 ASP A 65 ASP A 70 -1 N MET A 69 O ALA B 197 SHEET 7 A 8 VAL A 76 GLY A 80 -1 N VAL A 79 O ALA A 66 SHEET 8 A 8 LEU A 103 VAL A 105 1 N LEU A 104 O ALA A 78 SHEET 1 B 4 ALA B 222 ASP B 225 0 SHEET 2 B 4 GLY B 229 GLY B 235 -1 N ALA B 231 O TYR B 223 SHEET 3 B 4 GLY B 279 ASN B 285 -1 N ALA B 284 O ALA B 230 SHEET 4 B 4 TYR B 290 CYS B 294 -1 N ALA B 293 O VAL B 281 SHEET 1 C 8 THR D 316 ASP D 321 0 SHEET 2 C 8 GLN D 302 TYR D 308 -1 N VAL D 307 O THR D 316 SHEET 3 C 8 LEU C 6 THR C 10 -1 N ASN C 9 O MET D 306 SHEET 4 C 8 ILE D 184 ILE D 189 -1 N ILE D 189 O LEU C 6 SHEET 5 C 8 ILE D 195 THR D 201 -1 N SER D 200 O ILE D 184 SHEET 6 C 8 ASP C 65 ASP C 70 -1 N MET C 69 O ALA D 197 SHEET 7 C 8 VAL C 76 GLY C 80 -1 N VAL C 79 O ALA C 66 SHEET 8 C 8 LEU C 103 VAL C 105 1 N LEU C 104 O ALA C 78 SHEET 1 D 4 ALA D 222 ASP D 225 0 SHEET 2 D 4 GLY D 229 GLY D 235 -1 N ALA D 231 O TYR D 223 SHEET 3 D 4 GLY D 279 ASN D 285 -1 N ALA D 284 O ALA D 230 SHEET 4 D 4 TYR D 290 CYS D 294 -1 N ALA D 293 O VAL D 281 SSBOND 1 CYS A 41 CYS A 46 1555 1555 2.04 SSBOND 2 CYS A 140 CYS A 156 1555 1555 2.04 SSBOND 3 CYS B 263 CYS B 283 1555 1555 2.03 SSBOND 4 CYS B 294 CYS B 322 1555 1555 2.03 SSBOND 5 CYS C 41 CYS C 46 1555 1555 2.02 SSBOND 6 CYS C 140 CYS C 156 1555 1555 2.02 SSBOND 7 CYS D 263 CYS D 283 1555 1555 2.03 SSBOND 8 CYS D 294 CYS D 322 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN B 285 C1 NAG B 511 1555 1555 1.45 LINK ND2 ASN C 15 C1 NAG C 521 1555 1555 1.47 LINK ND2 ASN D 285 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.43 CISPEP 1 LEU A 4 PRO A 5 0 0.43 CISPEP 2 GLN A 141 PRO A 142 0 -0.03 CISPEP 3 ILE A 149 PRO A 150 0 -0.08 CISPEP 4 GLY A 157 PRO A 158 0 0.02 CISPEP 5 LEU C 4 PRO C 5 0 0.23 CISPEP 6 GLN C 141 PRO C 142 0 0.11 CISPEP 7 ILE C 149 PRO C 150 0 -0.37 CISPEP 8 GLY C 157 PRO C 158 0 0.19 SITE 1 B1 1 THR B 183 SITE 1 D1 1 THR D 183 CRYST1 98.400 98.400 134.500 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010163 0.005867 0.000000 0.00000 SCALE2 0.000000 0.011735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007435 0.00000 MTRIX1 1 -0.894600 -0.055000 0.443500 26.65290 1 MTRIX2 1 -0.064200 -0.966300 -0.249500 92.71680 1 MTRIX3 1 0.442200 -0.251700 0.860900 6.18120 1