PDB Short entry for 1B59 HEADER HYDROLASE 13-JAN-99 1B59 TITLE COMPLEX OF HUMAN METHIONINE AMINOPEPTIDASE-2 COMPLEXED WITH OVALICIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (METHIONINE AMINOPEPTIDASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 2; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: OVALICIN COVALENTLY LINKED TO HIS 231 NE2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA MNPV; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10455; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 12 OTHER_DETAILS: PROTEIN WAS EXPRESSED IN SF21 INSECT CELLS.. SOURCE 13 BACULOVIRUS PACSG2 VECTOR KEYWDS ANGIOGENESIS INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,J.C.CLARDY REVDAT 4 09-AUG-23 1B59 1 REMARK LINK REVDAT 3 24-FEB-09 1B59 1 VERSN REVDAT 2 01-APR-03 1B59 1 JRNL REVDAT 1 14-JAN-00 1B59 0 JRNL AUTH S.LIU,J.WIDOM,C.W.KEMP,C.M.CREWS,J.CLARDY JRNL TITL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 COMPLEXED JRNL TITL 2 WITH FUMAGILLIN. JRNL REF SCIENCE V. 282 1324 1998 JRNL REFN ISSN 0036-8075 JRNL PMID 9812898 JRNL DOI 10.1126/SCIENCE.282.5392.1324 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 39102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6019 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 326 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.26000 REMARK 3 B22 (A**2) : -4.77000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.800 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.76 REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : OVA.PAR REMARK 3 PARAMETER FILE 3 : PARAM19.ION REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : OVA.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19.ION REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000007225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29800 REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BN5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-30% T-BUTANOL, 50MM CITRATE BUFFER REMARK 280 PH=5.2-5.4, PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.64600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.64600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.55400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.55400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.64600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.55400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.64600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.86150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.55400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 109 REMARK 465 PRO A 139 REMARK 465 THR A 140 REMARK 465 GLN A 141 REMARK 465 ASP A 142 REMARK 465 GLY A 143 REMARK 465 ARG A 144 REMARK 465 THR A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 TRP A 148 REMARK 465 ARG A 149 REMARK 465 THR A 150 REMARK 465 THR A 151 REMARK 465 SER A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 296 NH2 ARG A 296 3555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 274 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 296 CG - CD - NE ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 296 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 296 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 354 CD - NE - CZ ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 354 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 398 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 417 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 417 NE - CZ - NH2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 465 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 117 -13.37 -144.79 REMARK 500 LYS A 209 63.14 60.67 REMARK 500 ASN A 211 80.87 -150.84 REMARK 500 CYS A 223 39.34 -148.82 REMARK 500 ASN A 226 -113.62 64.22 REMARK 500 MET A 378 -175.78 74.42 REMARK 500 CYS A 468 168.85 179.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 482 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 58.9 REMARK 620 3 ASP A 262 OD1 89.4 147.5 REMARK 620 4 ASP A 262 OD2 130.3 151.6 55.4 REMARK 620 5 GLU A 459 OE1 98.8 103.0 72.7 101.6 REMARK 620 6 HOH A 695 O 129.2 74.5 137.7 83.6 111.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 481 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 96.4 REMARK 620 3 GLU A 364 OE2 175.2 82.7 REMARK 620 4 GLU A 459 OE2 89.1 119.4 87.2 REMARK 620 5 HOH A 695 O 94.5 137.4 89.4 101.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: IUM REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: THE PROTEIN CONTAINS TWO METALS AT ITS ACTIVE REMARK 800 SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OVA A 480 DBREF 1B59 A 109 478 UNP P50579 AMPM2_HUMAN 109 478 SEQRES 1 A 370 PRO LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE CYS SEQRES 2 A 370 ASP LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN GLU SEQRES 3 A 370 CYS GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA ALA SEQRES 4 A 370 TRP ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP GLN SEQRES 5 A 370 ALA SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA ALA SEQRES 6 A 370 GLU ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER TRP SEQRES 7 A 370 ILE LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU LYS SEQRES 8 A 370 LEU GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN GLY SEQRES 9 A 370 LEU ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER LEU SEQRES 10 A 370 ASN ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY ASP SEQRES 11 A 370 THR THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE ASP SEQRES 12 A 370 PHE GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS ALA SEQRES 13 A 370 PHE THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU LEU SEQRES 14 A 370 LYS ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS CYS SEQRES 15 A 370 ALA GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU ALA SEQRES 16 A 370 ILE GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE ASP SEQRES 17 A 370 GLY LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU ASN SEQRES 18 A 370 GLY HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY LYS SEQRES 19 A 370 THR VAL PRO ILE VAL LYS GLY GLY GLU ALA THR ARG MET SEQRES 20 A 370 GLU GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SER SEQRES 21 A 370 THR GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SER SEQRES 22 A 370 HIS TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO ILE SEQRES 23 A 370 ARG LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE ASN SEQRES 24 A 370 GLU ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP LEU SEQRES 25 A 370 ASP ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU LYS SEQRES 26 A 370 ASN LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO PRO SEQRES 27 A 370 LEU CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE GLU SEQRES 28 A 370 HIS THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL VAL SEQRES 29 A 370 SER ARG GLY ASP ASP TYR HET CO A 481 1 HET CO A 482 1 HET OVA A 480 21 HETNAM CO COBALT (II) ION HETNAM OVA 3,4-DIHYDROXY-2-METHOXY-4-METHYL-3-[2-METHYL-3-(3- HETNAM 2 OVA METHYL-BUT-2-ENYL) -OXIRANYL]-CYCLOHEXANONE HETSYN OVA OVALICIN FORMUL 2 CO 2(CO 2+) FORMUL 4 OVA C16 H26 O5 FORMUL 5 HOH *213(H2 O) HELIX 1 1 ILE A 120 LEU A 123 1 4 HELIX 2 2 GLU A 154 TRP A 186 1 33 HELIX 3 3 MET A 193 ILE A 208 1 16 HELIX 4 4 PRO A 271 CYS A 290 5 20 HELIX 5 5 LEU A 297 SER A 310 1 14 HELIX 6 6 PRO A 397 ASN A 409 1 13 HELIX 7 7 ARG A 417 LEU A 423 1 7 HELIX 8 8 LEU A 429 ASP A 437 1 9 SHEET 1 A 5 GLN A 133 CYS A 135 0 SHEET 2 A 5 LYS A 469 VAL A 471 -1 N VAL A 471 O GLN A 133 SHEET 3 A 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 A 5 VAL A 360 SER A 368 -1 N GLY A 367 O ALA A 456 SHEET 5 A 5 HIS A 331 ILE A 333 -1 N ILE A 333 O VAL A 360 SHEET 1 B 3 GLY A 222 LEU A 225 0 SHEET 2 B 3 CYS A 248 ILE A 256 -1 N ASP A 251 O GLY A 222 SHEET 3 B 3 ARG A 259 VAL A 267 -1 N VAL A 267 O CYS A 248 SHEET 1 C 2 GLU A 312 ILE A 315 0 SHEET 2 C 2 LYS A 318 GLN A 321 -1 N TYR A 320 O VAL A 313 SHEET 1 D 2 HIS A 382 LYS A 385 0 SHEET 2 D 2 VAL A 441 TYR A 444 -1 N TYR A 444 O HIS A 382 SHEET 1 E 2 ALA A 215 PHE A 219 0 SHEET 2 E 2 GLY A 253 ILE A 256 -1 N HIS A 255 O GLY A 216 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.06 LINK NE2 HIS A 231 C11 OVA A 480 1555 1555 1.49 LINK OD1 ASP A 251 CO CO A 482 1555 1555 2.19 LINK OD2 ASP A 251 CO CO A 482 1555 1555 2.26 LINK OD2 ASP A 262 CO CO A 481 1555 1555 2.27 LINK OD1 ASP A 262 CO CO A 482 1555 1555 1.74 LINK OD2 ASP A 262 CO CO A 482 1555 1555 2.66 LINK NE2 HIS A 331 CO CO A 481 1555 1555 2.39 LINK OE2 GLU A 364 CO CO A 481 1555 1555 2.31 LINK OE2 GLU A 459 CO CO A 481 1555 1555 2.41 LINK OE1 GLU A 459 CO CO A 482 1555 1555 2.51 LINK CO CO A 481 O HOH A 695 1555 1555 2.27 LINK CO CO A 482 O HOH A 695 1555 1555 2.34 SITE 1 IUM 1 HIS A 231 SITE 1 AC1 7 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC1 7 OVA A 480 CO A 482 HOH A 695 SITE 1 AC2 5 ASP A 251 ASP A 262 GLU A 459 CO A 481 SITE 2 AC2 5 HOH A 695 SITE 1 AC3 10 HIS A 231 LEU A 328 ASN A 329 HIS A 331 SITE 2 AC3 10 ILE A 338 HIS A 339 TYR A 444 CO A 481 SITE 3 AC3 10 HOH A 559 HOH A 695 CRYST1 89.723 99.108 101.292 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009872 0.00000