PDB Short entry for 1BB8 HEADER INTEGRASE 29-APR-98 1BB8 TITLE N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, 25 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS INTEGRASE, DNA BINDING, TRANSPOSITION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR R.T.CLUBB,K.M.CONNOLLY,J.M.WOJCIAK REVDAT 5 16-FEB-22 1BB8 1 REMARK REVDAT 4 24-FEB-09 1BB8 1 VERSN REVDAT 3 23-FEB-00 1BB8 1 REMARK REVDAT 2 13-JAN-99 1BB8 1 SOURCE REMARK TITLE KEYWDS REVDAT 2 2 1 SHEET REVDAT 1 25-NOV-98 1BB8 0 JRNL AUTH K.M.CONNOLLY,J.M.WOJCIAK,R.T.CLUBB JRNL TITL SITE-SPECIFIC DNA BINDING USING A VARIATION OF THE DOUBLE JRNL TITL 2 STRANDED RNA BINDING MOTIF. JRNL REF NAT.STRUCT.BIOL. V. 5 546 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9665166 JRNL DOI 10.1038/799 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1BB8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171551. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY ETC. REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THREE AND FOUR-DIMENSIONAL HETERONUCLEAR NMR EXPERIMENTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 45 OD2 ASP A 48 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 9 -71.67 -101.30 REMARK 500 1 SER A 32 6.28 -62.11 REMARK 500 1 SER A 41 136.50 -170.78 REMARK 500 1 HIS A 72 37.14 -151.65 REMARK 500 2 LYS A 4 -113.92 -152.61 REMARK 500 2 SER A 32 -2.82 -59.79 REMARK 500 2 SER A 41 145.47 -172.27 REMARK 500 2 ALA A 46 -7.04 -55.15 REMARK 500 3 HIS A 72 15.84 -156.52 REMARK 500 4 ARG A 9 -77.38 -95.57 REMARK 500 4 SER A 41 146.19 -171.66 REMARK 500 4 HIS A 72 -59.98 -144.76 REMARK 500 5 SER A 41 143.60 -171.26 REMARK 500 5 ALA A 52 150.50 -48.96 REMARK 500 6 ARG A 9 -81.75 -104.77 REMARK 500 7 LYS A 4 -141.73 -155.28 REMARK 500 7 ASP A 7 -159.96 -81.57 REMARK 500 7 ARG A 9 -86.01 -92.18 REMARK 500 7 ASP A 56 162.33 -49.53 REMARK 500 8 ARG A 5 -148.03 -94.70 REMARK 500 8 SER A 41 146.31 -174.31 REMARK 500 9 SER A 32 1.46 -60.55 REMARK 500 10 ARG A 9 -80.13 -103.98 REMARK 500 10 SER A 32 6.06 -66.20 REMARK 500 10 SER A 59 174.77 -57.97 REMARK 500 10 HIS A 72 -42.13 -156.45 REMARK 500 11 LYS A 4 44.24 -86.11 REMARK 500 11 ASP A 7 -103.72 -137.56 REMARK 500 11 ASN A 8 -80.93 -66.46 REMARK 500 11 SER A 32 0.74 -64.10 REMARK 500 11 SER A 41 148.61 -172.11 REMARK 500 11 HIS A 72 13.52 -158.18 REMARK 500 12 SER A 32 0.30 -58.90 REMARK 500 12 ASP A 48 -174.43 -69.51 REMARK 500 13 ARG A 9 -73.39 -100.20 REMARK 500 13 PRO A 51 -112.88 -82.09 REMARK 500 13 ALA A 52 -149.76 -55.00 REMARK 500 13 HIS A 72 -127.39 -85.28 REMARK 500 14 SER A 32 -3.98 -59.87 REMARK 500 14 SER A 41 148.62 -171.77 REMARK 500 14 ALA A 52 151.60 -45.36 REMARK 500 14 ARG A 55 -99.10 -78.08 REMARK 500 15 ASP A 7 -169.57 -123.58 REMARK 500 15 SER A 32 3.33 -60.73 REMARK 500 15 GLN A 68 -72.57 -78.82 REMARK 500 16 SER A 32 -0.43 -59.28 REMARK 500 16 ALA A 52 159.55 -45.33 REMARK 500 16 ASP A 56 176.48 -52.10 REMARK 500 17 ASP A 7 -159.59 -130.98 REMARK 500 17 SER A 32 0.36 -63.01 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BB8 RELATED DB: PDB DBREF 1BB8 A 3 73 UNP P22886 TNR6_ENTFA 3 73 SEQRES 1 A 71 GLU LYS ARG ARG ASP ASN ARG GLY ARG ILE LEU LYS THR SEQRES 2 A 71 GLY GLU SER GLN ARG LYS ASP GLY ARG TYR LEU TYR LYS SEQRES 3 A 71 TYR ILE ASP SER PHE GLY GLU PRO GLN PHE VAL TYR SER SEQRES 4 A 71 TRP LYS LEU VAL ALA THR ASP ARG VAL PRO ALA GLY LYS SEQRES 5 A 71 ARG ASP CYS ILE SER LEU ARG GLU LYS ILE ALA GLU LEU SEQRES 6 A 71 GLN LYS ASP ILE HIS ASP HELIX 1 1 LEU A 60 ASP A 70 1 11 SHEET 1 A 3 SER A 18 GLN A 19 0 SHEET 2 A 3 TYR A 25 ILE A 30 1 SHEET 3 A 3 PRO A 36 SER A 41 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000