PDB Short entry for 1BGB HEADER HYDROLASE/DNA 28-MAY-98 1BGB TITLE ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3'); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ECORV ENDONUCLEASE; COMPND 7 CHAIN: A, B; COMPND 8 EC: 3.1.21.4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX (ENDONUCLEASE-DNA), HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PERONA,N.C.HORTON REVDAT 3 07-FEB-24 1BGB 1 REMARK REVDAT 2 24-FEB-09 1BGB 1 VERSN REVDAT 1 28-OCT-98 1BGB 0 JRNL AUTH N.C.HORTON,J.J.PERONA JRNL TITL RECOGNITION OF FLANKING DNA SEQUENCES BY ECORV ENDONUCLEASE JRNL TITL 2 INVOLVES ALTERNATIVE PATTERNS OF WATER-MEDIATED CONTACTS. JRNL REF J.BIOL.CHEM. V. 273 21721 1998 JRNL REFN ISSN 0021-9258 JRNL PMID 9705308 JRNL DOI 10.1074/JBC.273.34.21721 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.C.HORTON,J.J.PERONA REMARK 1 TITL ROLE OF PROTEIN-INDUCED BENDING IN THE SPECIFICITY OF DNA REMARK 1 TITL 2 RECOGNITION-CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE REMARK 1 TITL 3 COMPLEXED WITH D(AAAGAT) + D(ATCTT) REMARK 1 REF J.MOL.BIOL. V. 277 779 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.J.PERONA,A.M.MARTIN REMARK 1 TITL CONFORMATIONAL TRANSITIONS AND STRUCTURAL DEFORMABILITY OF REMARK 1 TITL 2 ECORV ENDONUCLEASE REVEALED BY CRYSTALLOGRAPHIC ANALYSIS REMARK 1 REF J.MOL.BIOL. V. 273 207 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 31018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1211 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 426 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.860 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.12 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.420 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARNDBX.DNA0 REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPNDBX.DNA REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000171721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.07700 REMARK 200 R SYM FOR SHELL (I) : 0.28000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED FROM 15% PEG 4K, 100 MM REMARK 280 IMIDAZOLE, (PH 6.5), 150 MM NACL., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC D 901 REMARK 465 ALA A 142 REMARK 465 THR A 143 REMARK 465 ARG A 144 REMARK 465 LYS A 145 REMARK 465 SER A 146 REMARK 465 SER A 147 REMARK 465 LEU A 148 REMARK 465 TYR B 12 REMARK 465 ASP B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 LYS B 17 REMARK 465 TYR B 18 REMARK 465 LYS B 98 REMARK 465 GLU B 99 REMARK 465 ASN B 100 REMARK 465 GLU B 101 REMARK 465 ALA B 142 REMARK 465 THR B 143 REMARK 465 ARG B 144 REMARK 465 LYS B 145 REMARK 465 SER B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 TYR A 18 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 SER A 35 OG REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASN A 84 CG OD1 ND2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 TYR A 95 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ASN A 154 CG OD1 ND2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLN A 224 CG CD OE1 NE2 REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 245 O CG CD CE NZ REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 SER B 35 OG REMARK 470 ASP B 36 CG OD1 OD2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 ASN B 84 CG OD1 ND2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 ASN B 97 CG OD1 ND2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 152 CG OD1 ND2 REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 ASN B 227 CG OD1 ND2 REMARK 470 ASP B 228 CG OD1 OD2 REMARK 470 LYS B 245 O CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 2 O HOH B 312 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N TYR B 241 O HOH A 312 1444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 83 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 -7.71 -59.38 REMARK 500 LYS A 17 -67.01 -101.81 REMARK 500 SER A 35 38.85 -98.32 REMARK 500 SER A 81 -2.88 -56.90 REMARK 500 GLU A 82 70.98 -153.29 REMARK 500 PRO A 83 3.01 -67.40 REMARK 500 LYS A 85 72.05 -102.71 REMARK 500 SER A 112 -121.11 -94.80 REMARK 500 ASN A 117 -31.58 -33.31 REMARK 500 PHE A 125 -38.65 -38.47 REMARK 500 LEU A 156 -18.45 -39.85 REMARK 500 THR A 187 71.20 28.68 REMARK 500 LYS A 229 -99.97 -90.96 REMARK 500 PRO B 32 173.46 -56.71 REMARK 500 ASN B 70 48.36 -85.57 REMARK 500 TYR B 78 149.08 -178.27 REMARK 500 GLU B 82 78.19 -104.64 REMARK 500 SER B 112 -127.30 -88.97 REMARK 500 LEU B 148 33.95 -96.43 REMARK 500 ILE B 153 93.93 -68.28 REMARK 500 ASN B 154 -7.44 145.79 REMARK 500 THR B 187 63.55 32.22 REMARK 500 LYS B 229 -95.08 -142.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D 906 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BGB A 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 1BGB B 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 1BGB C 801 811 PDB 1BGB 1BGB 801 811 DBREF 1BGB D 901 911 PDB 1BGB 1BGB 901 911 SEQRES 1 C 11 DC DG DG DG DA DT DA DT DC DC DC SEQRES 1 D 11 DC DG DG DG DA DT DA DT DC DC DC SEQRES 1 A 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 A 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 A 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 A 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 A 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 A 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 A 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 A 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 A 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 A 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 A 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 A 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 A 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 A 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 A 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 A 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 A 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 A 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 A 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS SEQRES 1 B 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 B 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 B 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 B 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 B 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 B 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 B 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 B 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 B 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 B 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 B 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 B 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 B 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 B 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 B 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 B 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 B 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 B 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 B 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS FORMUL 5 HOH *236(H2 O) HELIX 1 1 LEU A 3 LYS A 17 1 15 HELIX 2 2 THR A 37 LYS A 58 1 22 HELIX 3 3 PRO A 80 GLU A 82 5 3 HELIX 4 4 PHE A 125 GLN A 127 5 3 HELIX 5 5 ILE A 153 GLU A 155 5 3 HELIX 6 6 LYS A 173 ILE A 176 1 4 HELIX 7 7 TYR A 196 GLU A 201 1 6 HELIX 8 8 GLU A 209 ARG A 217 1 9 HELIX 9 9 SER A 223 ARG A 226 1 4 HELIX 10 10 ILE A 233 ARG A 242 1 10 HELIX 11 11 LEU B 3 ALA B 10 1 8 HELIX 12 12 THR B 37 LYS B 58 1 22 HELIX 13 13 PHE B 125 GLN B 127 5 3 HELIX 14 14 LYS B 173 ILE B 176 1 4 HELIX 15 15 TYR B 196 GLU B 201 1 6 HELIX 16 16 GLU B 209 ARG B 217 1 9 HELIX 17 17 SER B 223 ARG B 226 1 4 HELIX 18 18 ILE B 233 TYR B 241 1 9 SHEET 1 A 3 GLY A 22 ILE A 24 0 SHEET 2 A 3 LYS A 29 PRO A 32 -1 N TYR A 31 O ILE A 23 SHEET 3 A 3 THR A 150 ASN A 152 -1 N TYR A 151 O ILE A 30 SHEET 1 B 5 ILE A 62 GLU A 64 0 SHEET 2 B 5 PHE A 75 TYR A 78 -1 N TYR A 78 O ILE A 62 SHEET 3 B 5 LYS A 86 THR A 96 -1 N ILE A 89 O PHE A 75 SHEET 4 B 5 TYR A 128 THR A 139 1 N ILE A 129 O LYS A 86 SHEET 5 B 5 LYS A 167 ASP A 172 -1 N GLN A 171 O ILE A 133 SHEET 1 C 2 LYS B 29 TYR B 31 0 SHEET 2 C 2 THR B 150 ASN B 152 -1 N TYR B 151 O ILE B 30 SHEET 1 D 5 ILE B 62 GLU B 64 0 SHEET 2 D 5 PHE B 75 TYR B 78 -1 N TYR B 78 O ILE B 62 SHEET 3 D 5 LYS B 86 THR B 96 -1 N ILE B 89 O PHE B 75 SHEET 4 D 5 TYR B 128 ARG B 140 1 N ILE B 129 O LYS B 86 SHEET 5 D 5 TYR B 163 ASP B 172 -1 N GLN B 171 O ILE B 133 CISPEP 1 TYR A 72 PRO A 73 0 0.34 CISPEP 2 TYR B 72 PRO B 73 0 0.43 CRYST1 49.400 50.200 64.100 96.00 109.00 108.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020243 0.006577 0.008700 0.00000 SCALE2 0.000000 0.020945 0.004907 0.00000 SCALE3 0.000000 0.000000 0.016946 0.00000