PDB Short entry for 1BGV HEADER OXIDOREDUCTASE 01-JUN-98 1BGV TITLE GLUTAMATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.1.2; COMPND 5 OTHER_DETAILS: THE RESIDUE LABELLED B 501, A GLUTAMATE, IS THE COMPND 6 ENZYME'S SUBSTRATE WHICH IS BOUND WITHIN THE ACTIVE SITE. IT IS COMPND 7 THOUGHT TO AN ONLY PARTIALLY OCCUPIED SITE AND SO ITS OCCUPANCY WAS COMPND 8 SET TO 0.53. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SYMBIOSUM; SOURCE 3 ORGANISM_TAXID: 1512 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.STILLMAN,P.J.BAKER,K.L.BRITTON,D.W.RICE REVDAT 4 07-FEB-24 1BGV 1 REMARK REVDAT 3 13-JUL-11 1BGV 1 VERSN REVDAT 2 24-FEB-09 1BGV 1 VERSN REVDAT 1 14-OCT-98 1BGV 0 JRNL AUTH T.J.STILLMAN,P.J.BAKER,K.L.BRITTON,D.W.RICE JRNL TITL CONFORMATIONAL FLEXIBILITY IN GLUTAMATE DEHYDROGENASE. ROLE JRNL TITL 2 OF WATER IN SUBSTRATE RECOGNITION AND CATALYSIS. JRNL REF J.MOL.BIOL. V. 234 1131 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8263917 JRNL DOI 10.1006/JMBI.1993.1665 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.BAKER,M.L.WAUGH,X.G.WANG,T.J.STILLMAN,A.P.TURNBULL, REMARK 1 AUTH 2 P.C.ENGEL,D.W.RICE REMARK 1 TITL DETERMINANTS OF SUBSTRATE SPECIFICITY IN THE SUPERFAMILY OF REMARK 1 TITL 2 AMINO ACID DEHYDROGENASES REMARK 1 REF BIOCHEMISTRY V. 36 16109 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.S.YIP,T.J.STILLMAN,K.L.BRITTON,P.J.ARTYMIUK,P.J.BAKER, REMARK 1 AUTH 2 S.E.SEDELNIKOVA,P.C.ENGEL,A.PASQUO,R.CHIARALUCE,V.CONSALVI, REMARK 1 AUTH 3 R.SCANDURRA,D.W.RICE REMARK 1 TITL THE STRUCTURE OF PYROCOCCUS FURIOSUS GLUTAMATE DEHYDROGENASE REMARK 1 TITL 2 REVEALS A KEY ROLE FOR ION-PAIR NETWORKS IN MAINTAINING REMARK 1 TITL 3 ENZYME STABILITY AT EXTREME TEMPERATURES REMARK 1 REF STRUCTURE V. 3 1147 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.J.BAKER,K.L.BRITTON,D.W.RICE,A.ROB,T.J.STILLMAN REMARK 1 TITL ERRATUM. STRUCTURAL CONSEQUENCES OF SEQUENCE PATTERNS IN THE REMARK 1 TITL 2 FINGERPRINT REGION OF THE NUCLEOTIDE BINDING FOLD. REMARK 1 TITL 3 IMPLICATIONS FOR NUCLEOTIDE SPECIFICITY REMARK 1 REF J.MOL.BIOL. V. 232 1012 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH P.J.BAKER,K.L.BRITTON,D.W.RICE,A.ROB,T.J.STILLMAN REMARK 1 TITL STRUCTURAL CONSEQUENCES OF SEQUENCE PATTERNS IN THE REMARK 1 TITL 2 FINGERPRINT REGION OF THE NUCLEOTIDE BINDING FOLD. REMARK 1 TITL 3 IMPLICATIONS FOR NUCLEOTIDE SPECIFICITY REMARK 1 REF J.MOL.BIOL. V. 228 662 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH P.J.BAKER,K.L.BRITTON,P.C.ENGEL,G.W.FARRANTS,K.S.LILLEY, REMARK 1 AUTH 2 D.W.RICE,T.J.STILLMAN REMARK 1 TITL SUBUNIT ASSEMBLY AND ACTIVE SITE LOCATION IN THE STRUCTURE REMARK 1 TITL 2 OF GLUTAMATE DEHYDROGENASE REMARK 1 REF PROTEINS V. 12 75 1992 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 6 REMARK 1 AUTH K.L.BRITTON,P.J.BAKER,D.W.RICE,T.J.STILLMAN REMARK 1 TITL STRUCTURAL RELATIONSHIP BETWEEN THE HEXAMERIC AND TETRAMERIC REMARK 1 TITL 2 FAMILY OF GLUTAMATE DEHYDROGENASES REMARK 1 REF EUR.J.BIOCHEM. V. 209 851 1992 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.W.RICE,D.P.HORNBY,P.C.ENGEL REMARK 1 TITL CRYSTALLIZATION OF AN NAD+-DEPENDENT GLUTAMATE DEHYDROGENASE REMARK 1 TITL 2 FROM CLOSTRIDIUM SYMBIOSUM REMARK 1 REF J.MOL.BIOL. V. 181 147 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 40005 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1730 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 40005 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.017 ; 4.000 ; 3543 REMARK 3 BOND ANGLES (DEGREES) : 1.723 ; 4.000 ; 4771 REMARK 3 TORSION ANGLES (DEGREES) : 16.857; 0.000 ; 2113 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.017 ; 6.000 ; 97 REMARK 3 GENERAL PLANES (A) : 0.019 ; 15.000; 517 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.283 ; 0.500 ; 36 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS AND KRETSINGER REMARK 3 KSOL : 0.85 REMARK 3 BSOL : 248.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH AND HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE RESIDUE LABELLED B 501, A GLUTAMATE, IS THE ENZYME'S REMARK 3 SUBSTRATE WHICH IS BOUND WITHIN THE ACTIVE SITE. IT IS REMARK 3 THOUGHT TO AN ONLY PARTIALLY OCCUPIED SITE AND SO ITS REMARK 3 OCCUPANCY WAS SET TO 0.53. REMARK 4 REMARK 4 1BGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-91 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.360 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 81.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.99631 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.26667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 81.40000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.99631 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.26667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 81.40000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.99631 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.26667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 81.40000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 46.99631 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.26667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 81.40000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 46.99631 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.26667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 81.40000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 46.99631 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.26667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 93.99262 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 68.53333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 93.99262 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 68.53333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 93.99262 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 68.53333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 93.99262 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.53333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 93.99262 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 68.53333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 93.99262 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 68.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 352 O HOH A 672 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 571 O HOH A 571 6555 0.78 REMARK 500 O HOH A 652 O HOH A 652 6556 1.51 REMARK 500 O HOH A 643 O HOH A 643 6555 1.54 REMARK 500 O HOH A 586 O HOH A 586 5555 1.77 REMARK 500 CB ASP A 17 O HOH A 692 6555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 7 CB VAL A 7 CG1 0.130 REMARK 500 GLU A 12 CD GLU A 12 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 66 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 CYS A 320 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 CYS A 320 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 118 -1.22 78.33 REMARK 500 ASP A 165 -157.80 -169.18 REMARK 500 PHE A 187 -74.71 -84.97 REMARK 500 PHE A 238 12.94 -146.37 REMARK 500 PRO A 269 -18.70 -44.83 REMARK 500 ALA A 286 -70.99 -46.93 REMARK 500 SER A 287 -31.92 -22.86 REMARK 500 ALA A 321 -86.68 -131.45 REMARK 500 ASN A 324 44.03 29.63 REMARK 500 ALA A 448 -64.76 -131.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 142 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 501 DBREF 1BGV A 1 449 UNP P24295 DHE2_CLOSY 1 449 SEQRES 1 A 449 SER LYS TYR VAL ASP ARG VAL ILE ALA GLU VAL GLU LYS SEQRES 2 A 449 LYS TYR ALA ASP GLU PRO GLU PHE VAL GLN THR VAL GLU SEQRES 3 A 449 GLU VAL LEU SER SER LEU GLY PRO VAL VAL ASP ALA HIS SEQRES 4 A 449 PRO GLU TYR GLU GLU VAL ALA LEU LEU GLU ARG MET VAL SEQRES 5 A 449 ILE PRO GLU ARG VAL ILE GLU PHE ARG VAL PRO TRP GLU SEQRES 6 A 449 ASP ASP ASN GLY LYS VAL HIS VAL ASN THR GLY TYR ARG SEQRES 7 A 449 VAL GLN PHE ASN GLY ALA ILE GLY PRO TYR LYS GLY GLY SEQRES 8 A 449 LEU ARG PHE ALA PRO SER VAL ASN LEU SER ILE MET LYS SEQRES 9 A 449 PHE LEU GLY PHE GLU GLN ALA PHE LYS ASP SER LEU THR SEQRES 10 A 449 THR LEU PRO MET GLY GLY ALA LYS GLY GLY SER ASP PHE SEQRES 11 A 449 ASP PRO ASN GLY LYS SER ASP ARG GLU VAL MET ARG PHE SEQRES 12 A 449 CYS GLN ALA PHE MET THR GLU LEU TYR ARG HIS ILE GLY SEQRES 13 A 449 PRO ASP ILE ASP VAL PRO ALA GLY ASP LEU GLY VAL GLY SEQRES 14 A 449 ALA ARG GLU ILE GLY TYR MET TYR GLY GLN TYR ARG LYS SEQRES 15 A 449 ILE VAL GLY GLY PHE TYR ASN GLY VAL LEU THR GLY LYS SEQRES 16 A 449 ALA ARG SER PHE GLY GLY SER LEU VAL ARG PRO GLU ALA SEQRES 17 A 449 THR GLY TYR GLY SER VAL TYR TYR VAL GLU ALA VAL MET SEQRES 18 A 449 LYS HIS GLU ASN ASP THR LEU VAL GLY LYS THR VAL ALA SEQRES 19 A 449 LEU ALA GLY PHE GLY ASN VAL ALA TRP GLY ALA ALA LYS SEQRES 20 A 449 LYS LEU ALA GLU LEU GLY ALA LYS ALA VAL THR LEU SER SEQRES 21 A 449 GLY PRO ASP GLY TYR ILE TYR ASP PRO GLU GLY ILE THR SEQRES 22 A 449 THR GLU GLU LYS ILE ASN TYR MET LEU GLU MET ARG ALA SEQRES 23 A 449 SER GLY ARG ASN LYS VAL GLN ASP TYR ALA ASP LYS PHE SEQRES 24 A 449 GLY VAL GLN PHE PHE PRO GLY GLU LYS PRO TRP GLY GLN SEQRES 25 A 449 LYS VAL ASP ILE ILE MET PRO CYS ALA THR GLN ASN ASP SEQRES 26 A 449 VAL ASP LEU GLU GLN ALA LYS LYS ILE VAL ALA ASN ASN SEQRES 27 A 449 VAL LYS TYR TYR ILE GLU VAL ALA ASN MET PRO THR THR SEQRES 28 A 449 ASN GLU ALA LEU ARG PHE LEU MET GLN GLN PRO ASN MET SEQRES 29 A 449 VAL VAL ALA PRO SER LYS ALA VAL ASN ALA GLY GLY VAL SEQRES 30 A 449 LEU VAL SER GLY PHE GLU MET SER GLN ASN SER GLU ARG SEQRES 31 A 449 LEU SER TRP THR ALA GLU GLU VAL ASP SER LYS LEU HIS SEQRES 32 A 449 GLN VAL MET THR ASP ILE HIS ASP GLY SER ALA ALA ALA SEQRES 33 A 449 ALA GLU ARG TYR GLY LEU GLY TYR ASN LEU VAL ALA GLY SEQRES 34 A 449 ALA ASN ILE VAL GLY PHE GLN LYS ILE ALA ASP ALA MET SEQRES 35 A 449 MET ALA GLN GLY ILE ALA TRP HET GLU A 501 10 HETNAM GLU GLUTAMIC ACID FORMUL 2 GLU C5 H9 N O4 FORMUL 3 HOH *217(H2 O) HELIX 1 1 LYS A 2 LYS A 14 1 13 HELIX 2 2 PRO A 19 ASP A 37 1 19 HELIX 3 3 PRO A 40 VAL A 45 1 6 HELIX 4 4 LEU A 47 MET A 51 1 5 HELIX 5 5 LEU A 100 THR A 117 1 18 HELIX 6 6 ASP A 137 HIS A 154 1 18 HELIX 7 7 ALA A 170 VAL A 184 1 15 HELIX 8 8 ASN A 189 VAL A 191 5 3 HELIX 9 9 ARG A 197 PHE A 199 5 3 HELIX 10 10 ARG A 205 GLU A 224 1 20 HELIX 11 11 ASN A 240 LEU A 252 1 13 HELIX 12 12 GLU A 275 SER A 287 1 13 HELIX 13 13 VAL A 292 PHE A 299 5 8 HELIX 14 14 PRO A 309 GLY A 311 5 3 HELIX 15 15 LEU A 328 ALA A 336 1 9 HELIX 16 16 ASN A 352 GLN A 360 1 9 HELIX 17 17 SER A 369 VAL A 372 1 4 HELIX 18 18 ALA A 374 GLU A 389 1 16 HELIX 19 19 ALA A 395 ARG A 419 1 25 HELIX 20 20 LEU A 426 GLN A 445 1 20 SHEET 1 A 4 ARG A 56 GLU A 65 0 SHEET 2 A 4 VAL A 71 ASN A 82 -1 N GLN A 80 O ARG A 56 SHEET 3 A 4 GLY A 123 SER A 128 -1 N GLY A 127 O TYR A 77 SHEET 4 A 4 LEU A 92 PHE A 94 1 N ARG A 93 O GLY A 126 SHEET 1 B 2 TYR A 88 GLY A 91 0 SHEET 2 B 2 ASP A 160 ALA A 163 1 N VAL A 161 O TYR A 88 SHEET 1 C 7 VAL A 365 ALA A 367 0 SHEET 2 C 7 TYR A 341 GLU A 344 1 N TYR A 342 O VAL A 365 SHEET 3 C 7 ILE A 316 PRO A 319 1 N ILE A 317 O TYR A 341 SHEET 4 C 7 THR A 232 LEU A 235 1 N ALA A 234 O ILE A 316 SHEET 5 C 7 LYS A 255 GLY A 261 1 N LYS A 255 O VAL A 233 SHEET 6 C 7 GLY A 264 TYR A 267 -1 N ILE A 266 O LEU A 259 SHEET 7 C 7 GLN A 302 PRO A 305 -1 N PHE A 304 O TYR A 265 SITE 1 AC1 10 LYS A 89 GLY A 91 GLN A 110 LYS A 113 SITE 2 AC1 10 LYS A 125 ALA A 163 GLY A 164 ASP A 165 SITE 3 AC1 10 SER A 380 HOH A 502 CRYST1 162.800 162.800 102.800 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006143 0.003546 0.000000 0.00000 SCALE2 0.000000 0.007093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009728 0.00000