PDB Short entry for 1BHB HEADER PHOTORECEPTOR 11-OCT-93 1BHB TITLE THREE-DIMENSIONAL STRUCTURE OF (1-71) BACTERIOOPSIN SOLUBILIZED IN TITLE 2 METHANOL-CHLOROFORM AND SDS MICELLES DETERMINED BY 15N-1H TITLE 3 HETERONUCLEAR NMR SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; SOURCE 3 ORGANISM_TAXID: 2242 KEYWDS PHOTORECEPTOR EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR V.Y.OREKHOV,K.V.PERVUSHIN,A.I.POPOV,L.Y.MUSINA,A.S.ARSENIEV REVDAT 4 16-FEB-22 1BHB 1 REMARK REVDAT 3 24-FEB-09 1BHB 1 VERSN REVDAT 2 01-APR-03 1BHB 1 JRNL REVDAT 1 31-JAN-94 1BHB 0 JRNL AUTH K.V.PERVUSHIN,V.Y.U.OREKHOV,A.I.POPOV,L.Y.U.MUSINA, JRNL AUTH 2 A.S.ARSENIEV JRNL TITL THREE-DIMENSIONAL STRUCTURE OF (1-71)BACTERIOOPSIN JRNL TITL 2 SOLUBILIZED IN METHANOL/CHLOROFORM AND SDS MICELLES JRNL TITL 3 DETERMINED BY 15N-1H HETERONUCLEAR NMR SPECTROSCOPY. JRNL REF EUR.J.BIOCHEM. V. 219 571 1994 JRNL REFN ISSN 0014-2956 JRNL PMID 8307023 JRNL DOI 10.1111/J.1432-1033.1994.TB19973.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.G.SOBOL,A.S.ARSENIEV,G.V.ABDULAEVA,L.Y.MUSINA,V.F.BYSTROV REMARK 1 TITL SEQUENCE-SPECIFIC RESONANCE ASSIGNMENT, SECONDARY STRUCTURE REMARK 1 TITL 2 OF (1-71) BACTERIOOPSIN REMARK 1 REF J.BIOMOL.NMR V. 2 161 1992 REMARK 1 REFN ISSN 0925-2738 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.V.PERVUSHIN,A.S.ARSENIEV REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF (1-36) BACTERIOOPSIN IN REMARK 1 TITL 2 METHANOL-CHLOROFORM MIXTURE, SDS DETERMINED BY 2D H-NMR REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF FEBS LETT. V. 308 190 1992 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.L.LOMIZE,K.V.PERVUSHIN,A.S.ARSENIEV REMARK 1 TITL SPATIAL STRUCTURE OF (34-65) BACTERIOOPSIN POLYPEPTIDE IN REMARK 1 TITL 2 SDS MICELLES DETERMINED FROM NUCLEAR MAGNETIC RESONANCE DATA REMARK 1 REF J.BIOMOL.NMR V. 2 361 1992 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BHB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171757. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-12 REMARK 465 RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 PHE A 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 17 CD2 TYR A 57 0.81 REMARK 500 N ALA A 14 OH TYR A 57 0.98 REMARK 500 CE2 PHE A 27 CA THR A 47 0.99 REMARK 500 C LEU A 13 OH TYR A 57 0.99 REMARK 500 O LEU A 13 CZ TYR A 57 1.00 REMARK 500 CE MET A 20 N PHE A 54 1.09 REMARK 500 CE MET A 20 C ALA A 53 1.17 REMARK 500 OG1 THR A 17 CG TYR A 57 1.17 REMARK 500 CZ2 TRP A 10 CA THR A 67 1.37 REMARK 500 O LEU A 13 CE1 TYR A 57 1.43 REMARK 500 CD2 LEU A 13 CD2 LEU A 61 1.44 REMARK 500 O LEU A 13 OH TYR A 57 1.46 REMARK 500 SD MET A 20 CB ALA A 53 1.52 REMARK 500 CE2 PHE A 27 CB THR A 47 1.55 REMARK 500 CE2 TRP A 10 N THR A 67 1.57 REMARK 500 CA ALA A 14 OH TYR A 57 1.57 REMARK 500 CB THR A 17 CD2 TYR A 57 1.58 REMARK 500 CE2 TRP A 10 OG1 THR A 67 1.58 REMARK 500 C LEU A 13 CZ TYR A 57 1.60 REMARK 500 OG1 THR A 17 CE2 TYR A 57 1.62 REMARK 500 CZ2 TRP A 10 N THR A 67 1.62 REMARK 500 NE1 TRP A 10 N THR A 67 1.68 REMARK 500 CE MET A 20 O ALA A 53 1.72 REMARK 500 CD2 PHE A 27 CA THR A 47 1.73 REMARK 500 CE MET A 20 CA PHE A 54 1.74 REMARK 500 CE2 PHE A 27 OG1 THR A 47 1.80 REMARK 500 OG1 THR A 24 C PRO A 50 1.84 REMARK 500 NE1 TRP A 10 OG1 THR A 67 1.85 REMARK 500 OG1 THR A 24 CB PRO A 50 1.86 REMARK 500 CE2 PHE A 27 N THR A 47 1.89 REMARK 500 CB THR A 17 CE2 TYR A 57 1.90 REMARK 500 CD1 LEU A 13 CD1 TYR A 57 2.00 REMARK 500 C LEU A 13 CE1 TYR A 57 2.01 REMARK 500 SD MET A 20 C ALA A 53 2.02 REMARK 500 OG1 THR A 17 CD1 TYR A 57 2.02 REMARK 500 CE2 TRP A 10 CA THR A 67 2.03 REMARK 500 CZ2 TRP A 10 C LEU A 66 2.04 REMARK 500 CG2 THR A 17 CD2 TYR A 57 2.06 REMARK 500 SD MET A 20 CA ALA A 53 2.09 REMARK 500 CD1 LEU A 13 CE1 TYR A 57 2.09 REMARK 500 CD2 TRP A 10 OG1 THR A 67 2.09 REMARK 500 CG LEU A 13 CE1 TYR A 57 2.10 REMARK 500 CZ PHE A 27 OG1 THR A 47 2.12 REMARK 500 O LEU A 13 CE2 TYR A 57 2.13 REMARK 500 CD2 PHE A 27 CG2 THR A 47 2.15 REMARK 500 OG1 THR A 24 CA PRO A 50 2.17 REMARK 500 CD1 TRP A 10 CD1 LEU A 61 2.18 REMARK 500 CZ PHE A 27 CA THR A 47 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 PRO A 8 CD PRO A 8 N 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 3 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 3 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 4 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 4 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 5 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 5 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 6 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 6 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 7 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 7 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 8 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 8 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 9 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 9 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 10 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 10 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 11 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 11 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 12 TRP A 10 CG - CD2 - CE3 ANGL. DEV. = -5.5 DEGREES REMARK 500 12 TRP A 12 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 5 76.73 51.73 REMARK 500 1 ASP A 38 -55.16 -147.01 REMARK 500 1 LEU A 66 -67.62 -106.72 REMARK 500 2 GLN A 3 -64.67 78.71 REMARK 500 2 THR A 5 62.83 34.55 REMARK 500 2 ASP A 38 35.90 -145.56 REMARK 500 2 LEU A 66 -66.92 -92.40 REMARK 500 2 VAL A 69 73.47 -163.00 REMARK 500 3 LYS A 40 -43.99 -168.05 REMARK 500 4 ILE A 4 108.69 -56.95 REMARK 500 5 LYS A 40 32.75 -150.15 REMARK 500 5 LYS A 41 -61.27 -102.45 REMARK 500 6 THR A 5 55.26 35.72 REMARK 500 7 ILE A 4 55.08 -106.44 REMARK 500 7 THR A 5 52.16 36.97 REMARK 500 7 PRO A 8 51.18 -95.65 REMARK 500 7 THR A 67 -55.67 -136.30 REMARK 500 8 GLN A 3 -69.44 71.85 REMARK 500 8 THR A 5 64.15 34.61 REMARK 500 8 ASP A 38 -46.39 -173.00 REMARK 500 9 GLN A 3 99.86 -64.78 REMARK 500 9 ILE A 4 -75.98 67.85 REMARK 500 9 ARG A 7 78.06 -154.89 REMARK 500 10 GLN A 3 -62.86 76.98 REMARK 500 10 ILE A 4 96.92 -22.93 REMARK 500 10 THR A 5 67.02 30.98 REMARK 500 11 THR A 5 66.74 33.23 REMARK 500 11 LYS A 40 -58.54 -143.80 REMARK 500 12 ARG A 7 79.72 55.77 REMARK 500 12 MET A 68 34.31 -153.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 1BHB A 1 71 UNP P02945 BACR_HALN1 14 84 SEQRES 1 A 71 GLN ALA GLN ILE THR GLY ARG PRO GLU TRP ILE TRP LEU SEQRES 2 A 71 ALA LEU GLY THR ALA LEU MET GLY LEU GLY THR LEU TYR SEQRES 3 A 71 PHE LEU VAL LYS GLY MET GLY VAL SER ASP PRO ASP ALA SEQRES 4 A 71 LYS LYS PHE TYR ALA ILE THR THR LEU VAL PRO ALA ILE SEQRES 5 A 71 ALA PHE THR MET TYR LEU SER MET LEU LEU GLY TYR GLY SEQRES 6 A 71 LEU THR MET VAL PRO PHE HELIX 1 A PRO A 8 MET A 32 1 25 HELIX 2 B PHE A 42 TYR A 64 1KINK OF 26 DEGREES AT PRO 50 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000