PDB Short entry for 1BJI HEADER NEURAMINIDASE 03-DEC-97 1BJI TITLE THE X-RAY STRUCTURE OF A COMPLEX OF TERN N9 INFLUENZA VIRUS TITLE 2 NEURAMINIDASE COMPLEXED WITH THE GLAXO 6-CARBOXAMIDE SIALIC ACID TITLE 3 ANALOGUE GR217029 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 82 - 468; COMPND 5 SYNONYM: SIALIDASE; COMPND 6 EC: 3.2.1.18; COMPND 7 OTHER_DETAILS: INTEGRAL MEMBRANE PROTEIN, MEMBRANE BOUND STALK COMPND 8 CLEAVED BY PRONASE, RELEASING FULLY ACTIVE HEAD WITH RESIDUES 82 - COMPND 9 468 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/TERN/AUSTRALIA/G70C/75; SOURCE 5 OTHER_DETAILS: DETERGENT RELEASED, PRONASE DIGESTED KEYWDS NEURAMINIDASE, INFLUENZA PROTEIN, INHIBITOR COMPLEX, 6-CARBOXAMIDE KEYWDS 2 DERIVATIVE, SIALIC ACID ANALOGUE, GLAXO GR217029, HYDROLASE, KEYWDS 3 GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.N.VARGHESE REVDAT 5 03-APR-24 1BJI 1 HETSYN REVDAT 4 29-JUL-20 1BJI 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1BJI 1 VERSN REVDAT 2 24-FEB-09 1BJI 1 VERSN REVDAT 1 03-JUN-98 1BJI 0 JRNL AUTH N.R.TAYLOR,A.CLEASBY,O.SINGH,T.SKARZYNSKI,A.J.WONACOTT, JRNL AUTH 2 P.W.SMITH,S.L.SOLLIS,P.D.HOWES,P.C.CHERRY,R.BETHELL, JRNL AUTH 3 P.COLMAN,J.VARGHESE JRNL TITL DIHYDROPYRANCARBOXAMIDES RELATED TO ZANAMIVIR: A NEW SERIES JRNL TITL 2 OF INHIBITORS OF INFLUENZA VIRUS SIALIDASES. 2. JRNL TITL 3 CRYSTALLOGRAPHIC AND MOLECULAR MODELING STUDY OF COMPLEXES JRNL TITL 4 OF 4-AMINO-4H-PYRAN-6-CARBOXAMIDES AND SIALIDASE FROM JRNL TITL 5 INFLUENZA VIRUS TYPES A AND B. JRNL REF J.MED.CHEM. V. 41 798 1998 JRNL REFN ISSN 0022-2623 JRNL PMID 9526556 JRNL DOI 10.1021/JM9703754 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 68.0 REMARK 3 NUMBER OF REFLECTIONS : 22246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 24.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.02 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.02 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.530 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.000 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.500 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : CHO_2.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPCHO.PAR REMARK 3 TOPOLOGY FILE 3 : GR217.TOP REMARK 3 TOPOLOGY FILE 4 : TOPHPEP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-94 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE M18X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEIN V4, R-AXIS II REMARK 200 DATA SCALING SOFTWARE : PROTEIN V. 4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.0 REMARK 200 DATA REDUNDANCY : 5.070 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 27.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.0 REMARK 200 STARTING MODEL: TERN N9 NEURAMINIDASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M PHOSPHATE(PH 5.9) THE GLAXO 6 REMARK 280 -CARBOXAMIDE COMPOUND GR217029 WAS SOAKED IN TERN N9 REMARK 280 NEURAMININDASE CRYSTALS AT 5 MM FOR 24HR. THIS EXPERIMENT WAS REMARK 280 CARRIED OUT TO DETERMINE THE BINDING MODE OF THE 6-CARBOXAMIDE REMARK 280 HYDROPHOBIC GROUP. A NEW HYDROPHOBIC POCKET WAS DISCOVERED REMARK 280 EARLIER WITH A METHYL, ETHYL GROUP ATTACHED TO THE AMIDE OF TH3E REMARK 280 SIX-CARBOXAMIDE. THIS COMPOUND HAS A MUCH LARGER HYDROPHOBIC REMARK 280 GROUP ATTACHED., PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 91.40000 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 91.40000 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 91.40000 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 91.40000 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 91.40000 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 91.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 96 -177.14 -170.41 REMARK 500 ASP A 111 46.77 -148.21 REMARK 500 THR A 148 17.85 -69.22 REMARK 500 SER A 164 -0.47 76.64 REMARK 500 ASN A 200 42.22 -155.51 REMARK 500 ILE A 222 70.61 49.14 REMARK 500 GLU A 277 67.04 37.95 REMARK 500 CYS A 291 -158.25 -113.14 REMARK 500 GLN A 315 -168.71 -162.76 REMARK 500 ASN A 359 47.81 -83.38 REMARK 500 SER A 404 -142.24 -128.35 REMARK 500 PHE A 452 75.62 -105.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 475G REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 478 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 82.4 REMARK 620 3 ASP A 324 OD2 92.3 88.1 REMARK 620 4 ASN A 347 O 104.1 165.7 104.1 REMARK 620 5 HOH A 487 O 89.4 89.4 176.7 78.1 REMARK 620 6 HOH A 570 O 171.2 92.1 94.4 79.8 83.6 REMARK 620 N 1 2 3 4 5 DBREF 1BJI A 82 468 UNP P03472 NRAM_IATRA 83 470 SEQRES 1 A 388 ARG ASP PHE ASN ASN LEU THR LYS GLY LEU CYS THR ILE SEQRES 2 A 388 ASN SER TRP HIS ILE TYR GLY LYS ASP ASN ALA VAL ARG SEQRES 3 A 388 ILE GLY GLU ASP SER ASP VAL LEU VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP PRO ASP GLU CYS ARG PHE TYR ALA SEQRES 5 A 388 LEU SER GLN GLY THR THR ILE ARG GLY LYS HIS SER ASN SEQRES 6 A 388 GLY THR ILE HIS ASP ARG SER GLN TYR ARG ALA LEU ILE SEQRES 7 A 388 SER TRP PRO LEU SER SER PRO PRO THR VAL TYR ASN SER SEQRES 8 A 388 ARG VAL GLU CYS ILE GLY TRP SER SER THR SER CYS HIS SEQRES 9 A 388 ASP GLY LYS THR ARG MET SER ILE CYS ILE SER GLY PRO SEQRES 10 A 388 ASN ASN ASN ALA SER ALA VAL ILE TRP TYR ASN ARG ARG SEQRES 11 A 388 PRO VAL THR GLU ILE ASN THR TRP ALA ARG ASN ILE LEU SEQRES 12 A 388 ARG THR GLN GLU SER GLU CYS VAL CYS HIS ASN GLY VAL SEQRES 13 A 388 CYS PRO VAL VAL PHE THR ASP GLY SER ALA THR GLY PRO SEQRES 14 A 388 ALA GLU THR ARG ILE TYR TYR PHE LYS GLU GLY LYS ILE SEQRES 15 A 388 LEU LYS TRP GLU PRO LEU ALA GLY THR ALA LYS HIS ILE SEQRES 16 A 388 GLU GLU CYS SER CYS TYR GLY GLU ARG ALA GLU ILE THR SEQRES 17 A 388 CYS THR CYS ARG ASP ASN TRP GLN GLY SER ASN ARG PRO SEQRES 18 A 388 VAL ILE ARG ILE ASP PRO VAL ALA MET THR HIS THR SER SEQRES 19 A 388 GLN TYR ILE CYS SER PRO VAL LEU THR ASP ASN PRO ARG SEQRES 20 A 388 PRO ASN ASP PRO THR VAL GLY LYS CYS ASN ASP PRO TYR SEQRES 21 A 388 PRO GLY ASN ASN ASN ASN GLY VAL LYS GLY PHE SER TYR SEQRES 22 A 388 LEU ASP GLY VAL ASN THR TRP LEU GLY ARG THR ILE SER SEQRES 23 A 388 ILE ALA SER ARG SER GLY TYR GLU MET LEU LYS VAL PRO SEQRES 24 A 388 ASN ALA LEU THR ASP ASP LYS SER LYS PRO THR GLN GLY SEQRES 25 A 388 GLN THR ILE VAL LEU ASN THR ASP TRP SER GLY TYR SER SEQRES 26 A 388 GLY SER PHE MET ASP TYR TRP ALA GLU GLY GLU CYS TYR SEQRES 27 A 388 ARG ALA CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG PRO SEQRES 28 A 388 LYS GLU ASP LYS VAL TRP TRP THR SER ASN SER ILE VAL SEQRES 29 A 388 SER MET CYS SER SER THR GLU PHE LEU GLY GLN TRP ASP SEQRES 30 A 388 TRP PRO ASP GLY ALA LYS ILE GLU TYR PHE LEU MODRES 1BJI ASN A 86 ASN GLYCOSYLATION SITE MODRES 1BJI ASN A 146 ASN GLYCOSYLATION SITE MODRES 1BJI ASN A 200 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN A 475G 11 HET NAG A 476A 14 HET NAG A 477A 14 HET CA A 478 1 HET DPC A 479G 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM DPC 5-ACETYLAMINO-4-AMINO-6-(PHENETHYL-PROPYL-CARBAMOYL)-5, HETNAM 2 DPC 6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 4(C6 H12 O6) FORMUL 6 CA CA 2+ FORMUL 7 DPC C20 H27 N3 O5 FORMUL 8 HOH *191(H2 O) HELIX 1 1 ALA A 105 ASP A 111 1 7 HELIX 2 2 LYS A 143 SER A 145 5 3 HELIX 3 3 ILE A 464 TYR A 466 5 3 SHEET 1 A 4 TYR A 121 CYS A 124 0 SHEET 2 A 4 CYS A 129 SER A 135 -1 N TYR A 132 O TYR A 121 SHEET 3 A 4 ALA A 157 PRO A 162 -1 N TRP A 161 O PHE A 131 SHEET 4 A 4 ARG A 172 ILE A 176 -1 N CYS A 175 O LEU A 158 SHEET 1 B 4 SER A 179 HIS A 184 0 SHEET 2 B 4 ARG A 189 SER A 195 -1 N ILE A 194 O SER A 179 SHEET 3 B 4 SER A 202 TYR A 207 -1 N TRP A 206 O SER A 191 SHEET 4 B 4 ARG A 210 ASN A 216 -1 N ILE A 215 O ALA A 203 SHEET 1 C 4 VAL A 231 HIS A 233 0 SHEET 2 C 4 VAL A 236 ASP A 243 -1 N PRO A 238 O VAL A 231 SHEET 3 C 4 GLU A 251 LYS A 258 -1 N PHE A 257 O CYS A 237 SHEET 4 C 4 LYS A 261 PRO A 267 -1 N GLU A 266 O ILE A 254 SHEET 1 D 4 SER A 279 GLU A 283 0 SHEET 2 D 4 GLU A 286 THR A 290 -1 N THR A 290 O SER A 279 SHEET 3 D 4 PRO A 301 ASP A 306 -1 N ILE A 305 O ILE A 287 SHEET 4 D 4 THR A 311 TYR A 316 -1 N GLN A 315 O VAL A 302 SHEET 1 E 3 TRP A 361 ARG A 364 0 SHEET 2 E 3 TYR A 374 LYS A 378 -1 N LEU A 377 O LEU A 362 SHEET 3 E 3 GLN A 392 VAL A 398 -1 N VAL A 398 O TYR A 374 SHEET 1 F 4 SER A 407 MET A 411 0 SHEET 2 F 4 ALA A 420 GLY A 429 -1 N TYR A 423 O GLY A 408 SHEET 3 F 4 THR A 439 SER A 449 -1 N MET A 446 O PHE A 422 SHEET 4 F 4 SER A 96 LYS A 102 -1 N GLY A 101 O SER A 445 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.03 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.05 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.02 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.03 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.02 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.04 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.03 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.04 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.03 LINK ND2 ASN A 86 C1 NAG A 476A 1555 1555 1.46 LINK ND2 ASN A 146 C1 NAG A 477A 1555 1555 1.49 LINK ND2 ASN A 200 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.36 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.35 LINK O2 MAN B 4 C1 MAN B 5 1555 1555 1.42 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.41 LINK O ASP A 293 CA CA A 478 1555 1555 2.50 LINK O GLY A 297 CA CA A 478 1555 1555 2.49 LINK OD2 ASP A 324 CA CA A 478 1555 1555 2.70 LINK O ASN A 347 CA CA A 478 1555 1555 2.55 LINK CA CA A 478 O HOH A 487 1555 1555 2.70 LINK CA CA A 478 O HOH A 570 1555 1555 2.34 CISPEP 1 ASN A 325 PRO A 326 0 -8.77 CISPEP 2 ARG A 430 PRO A 431 0 9.08 CRYST1 182.800 182.800 182.800 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005470 0.00000