PDB Short entry for 1BLJ HEADER PHOSPHORYLATION 26-MAR-96 1BLJ TITLE NMR ENSEMBLE OF BLK SH2 DOMAIN, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: P55 BLK PROTEIN TYROSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN, SRC HOMOLOGY 2; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PEPTIDE FREE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: P55 BLK KINASE (RESIDUES 107 -; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 10 EXPRESSION_SYSTEM_GENE: P55 BLK KINASE (RESIDUES 107 - 218) KEYWDS SIGNAL TRANSDUCTION, TYROSINE KINASE, TRANSFERASE, KEYWDS 2 PHOSPHOTRANSFERASE, PHOSPHORYLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.J.METZLER,B.LEITING,K.PRYOR,L.MUELLER,B.T.FARMER II REVDAT 4 16-FEB-22 1BLJ 1 REMARK SEQADV REVDAT 3 24-FEB-09 1BLJ 1 VERSN REVDAT 2 01-APR-03 1BLJ 1 JRNL REVDAT 1 12-MAR-97 1BLJ 0 JRNL AUTH W.J.METZLER,B.LEITING,K.PRYOR,L.MUELLER,B.T.FARMER 2ND. JRNL TITL THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE SH2 DOMAIN JRNL TITL 2 FROM P55BLK KINASE. JRNL REF BIOCHEMISTRY V. 35 6201 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8639560 JRNL DOI 10.1021/BI960157X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BLJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171890. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 VAL A 64 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 2 VAL A 64 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 3 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 3 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.2 DEGREES REMARK 500 4 PHE A 38 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 4 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 5 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 5 THR A 107 CA - CB - OG1 ANGL. DEV. = 12.7 DEGREES REMARK 500 6 PHE A 38 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 6 PHE A 38 CB - CG - CD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 7 PHE A 38 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 7 VAL A 64 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 7 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.7 DEGREES REMARK 500 8 SER A 45 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 8 VAL A 64 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 9 PHE A 38 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 9 LEU A 39 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 9 SER A 45 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 9 VAL A 64 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 9 VAL A 92 CA - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 10 VAL A 64 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 10 LYS A 65 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 10 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 10 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.8 DEGREES REMARK 500 11 SER A 37 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 11 ASP A 56 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 11 TYR A 95 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 11 THR A 107 CA - CB - OG1 ANGL. DEV. = 14.6 DEGREES REMARK 500 12 LEU A 39 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 12 LYS A 65 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 12 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.3 DEGREES REMARK 500 13 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 13 SER A 45 N - CA - CB ANGL. DEV. = -10.7 DEGREES REMARK 500 13 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 13 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.5 DEGREES REMARK 500 14 PHE A 38 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 14 VAL A 64 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 14 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 14 TYR A 95 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 14 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.6 DEGREES REMARK 500 15 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 15 VAL A 64 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 15 THR A 107 CA - CB - OG1 ANGL. DEV. = 12.8 DEGREES REMARK 500 16 SER A 45 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 17 LYS A 65 N - CA - CB ANGL. DEV. = 12.8 DEGREES REMARK 500 18 PHE A 38 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 18 VAL A 64 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 18 THR A 107 CA - CB - OG1 ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 6 96.06 67.71 REMARK 500 1 GLU A 10 -91.75 -148.86 REMARK 500 1 VAL A 11 15.74 56.67 REMARK 500 1 LYS A 13 -62.33 68.25 REMARK 500 1 THR A 18 70.51 -67.72 REMARK 500 1 ASN A 33 -165.36 -126.83 REMARK 500 1 ALA A 35 109.63 -24.54 REMARK 500 1 LYS A 47 45.23 -100.86 REMARK 500 1 ILE A 57 76.61 -101.60 REMARK 500 1 GLU A 62 90.63 9.70 REMARK 500 1 VAL A 64 -146.42 -79.73 REMARK 500 1 LYS A 98 98.58 -164.30 REMARK 500 1 GLN A 104 107.94 -160.85 REMARK 500 1 THR A 107 -69.47 -138.73 REMARK 500 1 PRO A 109 94.91 -56.29 REMARK 500 1 CYS A 110 -144.96 35.75 REMARK 500 2 ALA A 4 152.83 69.60 REMARK 500 2 GLU A 7 -89.21 48.80 REMARK 500 2 THR A 8 -33.72 -160.80 REMARK 500 2 GLU A 12 98.56 -17.34 REMARK 500 2 LYS A 13 -25.76 68.66 REMARK 500 2 ARG A 17 176.06 61.86 REMARK 500 2 THR A 18 67.44 -67.50 REMARK 500 2 ALA A 35 121.15 -33.33 REMARK 500 2 ASN A 46 -167.32 -122.93 REMARK 500 2 LYS A 47 78.73 -100.39 REMARK 500 2 VAL A 64 -167.27 -128.71 REMARK 500 2 ASP A 100 6.20 -66.59 REMARK 500 2 LEU A 102 -98.09 -74.14 REMARK 500 2 CYS A 103 -44.75 -173.16 REMARK 500 2 THR A 107 -66.69 -128.28 REMARK 500 2 CYS A 110 -166.60 17.46 REMARK 500 2 LEU A 113 63.18 60.66 REMARK 500 3 SER A 2 -82.42 64.44 REMARK 500 3 LYS A 13 -74.41 66.73 REMARK 500 3 PHE A 15 70.19 -114.54 REMARK 500 3 ARG A 17 -94.68 36.68 REMARK 500 3 THR A 18 97.60 -165.76 REMARK 500 3 ILE A 19 -166.76 -100.10 REMARK 500 3 PRO A 31 4.88 -68.78 REMARK 500 3 GLU A 44 -19.48 -48.46 REMARK 500 3 THR A 58 -78.33 -79.70 REMARK 500 3 THR A 59 -11.10 158.41 REMARK 500 3 VAL A 63 -156.88 -105.82 REMARK 500 3 VAL A 64 -162.75 -127.61 REMARK 500 3 ASP A 100 64.42 39.15 REMARK 500 3 CYS A 103 -5.72 76.89 REMARK 500 3 THR A 107 -73.34 -138.15 REMARK 500 3 LEU A 113 53.22 -159.28 REMARK 500 4 SER A 2 47.82 -171.40 REMARK 500 REMARK 500 THIS ENTRY HAS 347 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 95 0.07 SIDE CHAIN REMARK 500 7 TYR A 95 0.10 SIDE CHAIN REMARK 500 9 PHE A 38 0.09 SIDE CHAIN REMARK 500 11 TYR A 77 0.09 SIDE CHAIN REMARK 500 13 TYR A 95 0.07 SIDE CHAIN REMARK 500 15 TYR A 95 0.08 SIDE CHAIN REMARK 500 16 TYR A 95 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BLJ A 1 114 UNP P16277 BLK_MOUSE 99 217 SEQADV 1BLJ GLY A 1 UNP P16277 PRO 102 CONFLICT SEQADV 1BLJ A UNP P16277 ASN 104 DELETION SEQADV 1BLJ A UNP P16277 PHE 105 DELETION SEQRES 1 A 114 GLY SER VAL ALA PRO VAL GLU THR LEU GLU VAL GLU LYS SEQRES 2 A 114 TRP PHE PHE ARG THR ILE SER ARG LYS ASP ALA GLU ARG SEQRES 3 A 114 GLN LEU LEU ALA PRO MET ASN LYS ALA GLY SER PHE LEU SEQRES 4 A 114 ILE ARG GLU SER GLU SER ASN LYS GLY ALA PHE SER LEU SEQRES 5 A 114 SER VAL LYS ASP ILE THR THR GLN GLY GLU VAL VAL LYS SEQRES 6 A 114 HIS TYR LYS ILE ARG SER LEU ASP ASN GLY GLY TYR TYR SEQRES 7 A 114 ILE SER PRO ARG ILE THR PHE PRO THR LEU GLN ALA LEU SEQRES 8 A 114 VAL GLN HIS TYR SER LYS LYS GLY ASP GLY LEU CYS GLN SEQRES 9 A 114 LYS LEU THR LEU PRO CYS VAL ASN LEU ALA HELIX 1 1 ARG A 21 LEU A 28 1 8 HELIX 2 2 LEU A 88 LYS A 97 1 10 SHEET 1 A 4 TRP A 14 PHE A 16 0 SHEET 2 A 4 SER A 37 GLU A 42 1 N ILE A 40 O PHE A 16 SHEET 3 A 4 ALA A 49 ILE A 57 -1 N SER A 53 O LEU A 39 SHEET 4 A 4 GLU A 62 ILE A 69 -1 N ILE A 69 O PHE A 50 SHEET 1 B 3 ARG A 70 LEU A 72 0 SHEET 2 B 3 GLY A 76 SER A 80 -1 N TYR A 78 O ARG A 70 SHEET 3 B 3 ILE A 83 PHE A 85 -1 N PHE A 85 O TYR A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000