PDB Short entry for 1BNR HEADER MICROBIAL RIBONUCLEASE 31-MAR-95 1BNR TITLE BARNASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BARNASE (G SPECIFIC ENDONUCLEASE); COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.27.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: NMR, 20 STRUCTURES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS; SOURCE 3 ORGANISM_TAXID: 1390; SOURCE 4 GENE: BARNASE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTZ18 DERIVED; SOURCE 8 EXPRESSION_SYSTEM_GENE: BARNASE KEYWDS MICROBIAL RIBONUCLEASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BYCROFT REVDAT 3 16-FEB-22 1BNR 1 REMARK REVDAT 2 24-FEB-09 1BNR 1 VERSN REVDAT 1 31-JUL-95 1BNR 0 JRNL AUTH M.BYCROFT,S.LUDVIGSEN,A.R.FERSHT,F.M.POULSEN JRNL TITL DETERMINATION OF THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF JRNL TITL 2 BARNASE USING NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY. JRNL REF BIOCHEMISTRY V. 30 8697 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 1888730 JRNL DOI 10.1021/BI00099A030 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BNR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171949. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 16 -68.29 -93.15 REMARK 500 1 LYS A 19 130.38 177.39 REMARK 500 1 LEU A 20 159.37 -47.61 REMARK 500 1 TYR A 24 79.03 -113.59 REMARK 500 1 THR A 26 176.72 -46.66 REMARK 500 1 ASN A 41 27.10 -159.26 REMARK 500 1 ALA A 46 63.92 -150.65 REMARK 500 1 ASN A 58 62.97 76.89 REMARK 500 1 LYS A 62 15.80 -149.95 REMARK 500 1 PRO A 64 87.99 -62.38 REMARK 500 1 ASN A 77 117.89 68.60 REMARK 500 1 TYR A 78 125.21 -170.44 REMARK 500 1 THR A 79 -80.25 -134.01 REMARK 500 1 ARG A 83 170.72 -46.99 REMARK 500 1 ASP A 101 20.16 -150.00 REMARK 500 1 HIS A 102 68.83 79.06 REMARK 500 1 TYR A 103 17.50 54.44 REMARK 500 1 ILE A 109 -83.63 -109.84 REMARK 500 2 ASN A 5 53.87 -140.65 REMARK 500 2 THR A 16 -67.08 -93.85 REMARK 500 2 LYS A 19 129.82 175.89 REMARK 500 2 LEU A 20 161.06 -44.04 REMARK 500 2 THR A 26 172.79 -45.44 REMARK 500 2 LYS A 39 39.06 72.55 REMARK 500 2 SER A 67 97.12 -50.56 REMARK 500 2 ASN A 77 123.12 74.02 REMARK 500 2 TYR A 78 119.19 -170.41 REMARK 500 2 SER A 80 169.10 173.63 REMARK 500 2 ASP A 101 20.71 -150.11 REMARK 500 2 HIS A 102 70.98 79.52 REMARK 500 2 TYR A 103 20.91 49.43 REMARK 500 3 THR A 16 -70.13 -91.20 REMARK 500 3 LYS A 19 129.06 172.34 REMARK 500 3 THR A 26 174.73 -46.90 REMARK 500 3 SER A 38 -74.20 -76.28 REMARK 500 3 ALA A 46 74.59 -119.92 REMARK 500 3 SER A 57 -86.85 -44.67 REMARK 500 3 PRO A 64 96.45 -60.61 REMARK 500 3 ASN A 77 38.72 71.62 REMARK 500 3 THR A 79 -80.26 -129.64 REMARK 500 3 PHE A 82 175.77 -49.45 REMARK 500 3 ARG A 83 -160.37 -60.62 REMARK 500 3 ASP A 101 25.98 -149.72 REMARK 500 3 HIS A 102 74.16 76.14 REMARK 500 3 TYR A 103 29.67 42.15 REMARK 500 4 GLN A 2 97.15 66.95 REMARK 500 4 THR A 16 -62.43 -93.43 REMARK 500 4 LYS A 19 129.86 177.73 REMARK 500 4 LEU A 20 160.66 -44.60 REMARK 500 4 THR A 26 169.61 -44.29 REMARK 500 REMARK 500 THIS ENTRY HAS 296 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 59 0.19 SIDE CHAIN REMARK 500 1 ARG A 69 0.19 SIDE CHAIN REMARK 500 1 ARG A 72 0.31 SIDE CHAIN REMARK 500 1 ARG A 83 0.28 SIDE CHAIN REMARK 500 1 ARG A 87 0.17 SIDE CHAIN REMARK 500 1 ARG A 110 0.24 SIDE CHAIN REMARK 500 2 ARG A 59 0.20 SIDE CHAIN REMARK 500 2 ARG A 69 0.29 SIDE CHAIN REMARK 500 2 ARG A 72 0.12 SIDE CHAIN REMARK 500 2 ARG A 83 0.31 SIDE CHAIN REMARK 500 2 ARG A 87 0.30 SIDE CHAIN REMARK 500 2 ARG A 110 0.23 SIDE CHAIN REMARK 500 3 ARG A 59 0.30 SIDE CHAIN REMARK 500 3 ARG A 69 0.14 SIDE CHAIN REMARK 500 3 ARG A 72 0.30 SIDE CHAIN REMARK 500 3 ARG A 83 0.30 SIDE CHAIN REMARK 500 3 ARG A 87 0.19 SIDE CHAIN REMARK 500 3 ARG A 110 0.31 SIDE CHAIN REMARK 500 4 ARG A 59 0.29 SIDE CHAIN REMARK 500 4 ARG A 69 0.13 SIDE CHAIN REMARK 500 4 ARG A 72 0.30 SIDE CHAIN REMARK 500 4 ARG A 83 0.31 SIDE CHAIN REMARK 500 4 ARG A 87 0.22 SIDE CHAIN REMARK 500 4 ARG A 110 0.20 SIDE CHAIN REMARK 500 5 ARG A 59 0.25 SIDE CHAIN REMARK 500 5 ARG A 69 0.27 SIDE CHAIN REMARK 500 5 ARG A 72 0.24 SIDE CHAIN REMARK 500 5 ARG A 83 0.30 SIDE CHAIN REMARK 500 5 ARG A 87 0.08 SIDE CHAIN REMARK 500 5 ARG A 110 0.21 SIDE CHAIN REMARK 500 6 ARG A 59 0.23 SIDE CHAIN REMARK 500 6 ARG A 69 0.21 SIDE CHAIN REMARK 500 6 ARG A 72 0.24 SIDE CHAIN REMARK 500 6 ARG A 83 0.24 SIDE CHAIN REMARK 500 6 ARG A 87 0.24 SIDE CHAIN REMARK 500 6 ARG A 110 0.15 SIDE CHAIN REMARK 500 7 ARG A 59 0.26 SIDE CHAIN REMARK 500 7 ARG A 69 0.27 SIDE CHAIN REMARK 500 7 ARG A 72 0.30 SIDE CHAIN REMARK 500 7 ARG A 83 0.32 SIDE CHAIN REMARK 500 7 ARG A 87 0.32 SIDE CHAIN REMARK 500 7 ARG A 110 0.28 SIDE CHAIN REMARK 500 8 ARG A 59 0.30 SIDE CHAIN REMARK 500 8 ARG A 69 0.22 SIDE CHAIN REMARK 500 8 ARG A 72 0.13 SIDE CHAIN REMARK 500 8 ARG A 83 0.32 SIDE CHAIN REMARK 500 8 ARG A 87 0.26 SIDE CHAIN REMARK 500 8 ARG A 110 0.20 SIDE CHAIN REMARK 500 9 ARG A 59 0.31 SIDE CHAIN REMARK 500 9 ARG A 69 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 114 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1BNR A 1 110 UNP P00648 RNBR_BACAM 48 157 SEQRES 1 A 110 ALA GLN VAL ILE ASN THR PHE ASP GLY VAL ALA ASP TYR SEQRES 2 A 110 LEU GLN THR TYR HIS LYS LEU PRO ASP ASN TYR ILE THR SEQRES 3 A 110 LYS SER GLU ALA GLN ALA LEU GLY TRP VAL ALA SER LYS SEQRES 4 A 110 GLY ASN LEU ALA ASP VAL ALA PRO GLY LYS SER ILE GLY SEQRES 5 A 110 GLY ASP ILE PHE SER ASN ARG GLU GLY LYS LEU PRO GLY SEQRES 6 A 110 LYS SER GLY ARG THR TRP ARG GLU ALA ASP ILE ASN TYR SEQRES 7 A 110 THR SER GLY PHE ARG ASN SER ASP ARG ILE LEU TYR SER SEQRES 8 A 110 SER ASP TRP LEU ILE TYR LYS THR THR ASP HIS TYR GLN SEQRES 9 A 110 THR PHE THR LYS ILE ARG HELIX 1 1 PHE A 7 TYR A 17 1 11 HELIX 2 2 LYS A 27 LEU A 33 1 7 HELIX 3 3 LEU A 42 VAL A 45 1 4 SHEET 1 A 4 ILE A 96 THR A 99 0 SHEET 2 A 4 ARG A 87 SER A 91 -1 N LEU A 89 O TYR A 97 SHEET 3 A 4 TRP A 71 ASP A 75 -1 N ALA A 74 O ILE A 88 SHEET 4 A 4 GLY A 52 PHE A 56 -1 N PHE A 56 O TRP A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000