PDB Short entry for 1BOA HEADER AMINOPEPTIDASE 01-AUG-98 1BOA TITLE HUMAN METHIONINE AMINOPEPTIDASE 2 COMPLEXED WITH ANGIOGENESIS TITLE 2 INHIBITOR FUMAGILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.18; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: COMPLEX WITH FUMAGILLIN AND COBALT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21 CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS, PACSG2 KEYWDS METHIONINE AMINOPEPTIDASE, ANGIOGENESIS INHIBITOR, FUMAGILLIN, KEYWDS 2 HYDROLASE, AMINOPEPTIDASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LIU,J.WIDOM,C.W.KEMP,C.M.CREWS,J.C.CLARDY REVDAT 4 09-AUG-23 1BOA 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1BOA 1 VERSN REVDAT 2 01-APR-03 1BOA 1 JRNL REVDAT 1 01-AUG-99 1BOA 0 JRNL AUTH S.LIU,J.WIDOM,C.W.KEMP,C.M.CREWS,J.CLARDY JRNL TITL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 COMPLEXED JRNL TITL 2 WITH FUMAGILLIN. JRNL REF SCIENCE V. 282 1324 1998 JRNL REFN ISSN 0036-8075 JRNL PMID 9812898 JRNL DOI 10.1126/SCIENCE.282.5392.1324 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 40791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2059 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.028 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.034 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.173 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.244 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.118 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 6.600 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 12.900; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 27.100; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.640 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.680 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.050 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION FROM X-PLOR REMARK 3 USED. REMARK 4 REMARK 4 1BOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.922 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 26.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14900 REMARK 200 R SYM FOR SHELL (I) : 0.14900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1XGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.97500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.97500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.97500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.79000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.97500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.79000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 LEU A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 ASP A 19 REMARK 465 PRO A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 ARG A 39 REMARK 465 ARG A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 PRO A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 GLU A 55 REMARK 465 PRO A 56 REMARK 465 ASP A 57 REMARK 465 LYS A 58 REMARK 465 GLU A 59 REMARK 465 SER A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 SER A 63 REMARK 465 VAL A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 ALA A 68 REMARK 465 ARG A 69 REMARK 465 GLN A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 ASP A 78 REMARK 465 LYS A 79 REMARK 465 GLU A 80 REMARK 465 ARG A 81 REMARK 465 ASP A 82 REMARK 465 GLU A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 ASP A 87 REMARK 465 GLY A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 90 REMARK 465 ASP A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 93 REMARK 465 GLY A 94 REMARK 465 ALA A 95 REMARK 465 THR A 96 REMARK 465 GLY A 97 REMARK 465 LYS A 98 REMARK 465 LYS A 99 REMARK 465 LYS A 100 REMARK 465 LYS A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 103 REMARK 465 LYS A 104 REMARK 465 LYS A 105 REMARK 465 LYS A 106 REMARK 465 ARG A 107 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 PRO A 139 REMARK 465 THR A 140 REMARK 465 GLN A 141 REMARK 465 ASP A 142 REMARK 465 GLY A 143 REMARK 465 ARG A 144 REMARK 465 THR A 145 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 TRP A 148 REMARK 465 ARG A 149 REMARK 465 THR A 150 REMARK 465 THR A 151 REMARK 465 SER A 152 REMARK 465 GLU A 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ASP A 114 CB CG OD1 OD2 REMARK 470 ASN A 126 OD1 ND2 REMARK 470 GLU A 136 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4C FUG A 480 O HOH A 625 0.14 REMARK 500 C4A FUG A 480 O HOH A 625 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 296 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 354 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 354 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 417 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 465 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 114 -88.64 -48.62 REMARK 500 SER A 117 -9.91 -142.04 REMARK 500 LYS A 155 50.11 179.10 REMARK 500 CYS A 223 44.42 -143.02 REMARK 500 ASN A 226 -111.38 65.98 REMARK 500 MET A 378 -176.20 77.48 REMARK 500 CYS A 468 162.91 174.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 114 PRO A 115 147.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 482 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 56.1 REMARK 620 3 ASP A 262 OD1 83.8 139.4 REMARK 620 4 ASP A 262 OD2 131.6 158.6 55.7 REMARK 620 5 GLU A 459 OE1 92.3 99.9 74.2 99.6 REMARK 620 6 HOH A 662 O 130.9 76.8 143.5 88.4 109.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 481 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 OD2 REMARK 620 2 HIS A 331 NE2 96.3 REMARK 620 3 GLU A 364 OE2 178.5 85.0 REMARK 620 4 GLU A 459 OE2 88.5 120.9 90.1 REMARK 620 5 HOH A 662 O 93.1 139.3 86.5 98.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CO2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: DICOBALT ACTIVE SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: BND REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: FUMAGILLIN 480 FORMS A COVALENT BOND WITH HIS REMARK 800 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUG A 480 DBREF 1BOA A 1 478 UNP P50579 AMPM2_HUMAN 1 478 SEQADV 1BOA ILE A 347 UNP P50579 VAL 347 CONFLICT SEQRES 1 A 478 MET ALA GLY VAL GLU GLU VAL ALA ALA SER GLY SER HIS SEQRES 2 A 478 LEU ASN GLY ASP LEU ASP PRO ASP ASP ARG GLU GLU GLY SEQRES 3 A 478 ALA ALA SER THR ALA GLU GLU ALA ALA LYS LYS LYS ARG SEQRES 4 A 478 ARG LYS LYS LYS LYS SER LYS GLY PRO SER ALA ALA GLY SEQRES 5 A 478 GLU GLN GLU PRO ASP LYS GLU SER GLY ALA SER VAL ASP SEQRES 6 A 478 GLU VAL ALA ARG GLN LEU GLU ARG SER ALA LEU GLU ASP SEQRES 7 A 478 LYS GLU ARG ASP GLU ASP ASP GLU ASP GLY ASP GLY ASP SEQRES 8 A 478 GLY ASP GLY ALA THR GLY LYS LYS LYS LYS LYS LYS LYS SEQRES 9 A 478 LYS LYS ARG GLY PRO LYS VAL GLN THR ASP PRO PRO SER SEQRES 10 A 478 VAL PRO ILE CYS ASP LEU TYR PRO ASN GLY VAL PHE PRO SEQRES 11 A 478 LYS GLY GLN GLU CYS GLU TYR PRO PRO THR GLN ASP GLY SEQRES 12 A 478 ARG THR ALA ALA TRP ARG THR THR SER GLU GLU LYS LYS SEQRES 13 A 478 ALA LEU ASP GLN ALA SER GLU GLU ILE TRP ASN ASP PHE SEQRES 14 A 478 ARG GLU ALA ALA GLU ALA HIS ARG GLN VAL ARG LYS TYR SEQRES 15 A 478 VAL MET SER TRP ILE LYS PRO GLY MET THR MET ILE GLU SEQRES 16 A 478 ILE CYS GLU LYS LEU GLU ASP CYS SER ARG LYS LEU ILE SEQRES 17 A 478 LYS GLU ASN GLY LEU ASN ALA GLY LEU ALA PHE PRO THR SEQRES 18 A 478 GLY CYS SER LEU ASN ASN CYS ALA ALA HIS TYR THR PRO SEQRES 19 A 478 ASN ALA GLY ASP THR THR VAL LEU GLN TYR ASP ASP ILE SEQRES 20 A 478 CYS LYS ILE ASP PHE GLY THR HIS ILE SER GLY ARG ILE SEQRES 21 A 478 ILE ASP CYS ALA PHE THR VAL THR PHE ASN PRO LYS TYR SEQRES 22 A 478 ASP THR LEU LEU LYS ALA VAL LYS ASP ALA THR ASN THR SEQRES 23 A 478 GLY ILE LYS CYS ALA GLY ILE ASP VAL ARG LEU CYS ASP SEQRES 24 A 478 VAL GLY GLU ALA ILE GLN GLU VAL MET GLU SER TYR GLU SEQRES 25 A 478 VAL GLU ILE ASP GLY LYS THR TYR GLN VAL LYS PRO ILE SEQRES 26 A 478 ARG ASN LEU ASN GLY HIS SER ILE GLY GLN TYR ARG ILE SEQRES 27 A 478 HIS ALA GLY LYS THR VAL PRO ILE ILE LYS GLY GLY GLU SEQRES 28 A 478 ALA THR ARG MET GLU GLU GLY GLU VAL TYR ALA ILE GLU SEQRES 29 A 478 THR PHE GLY SER THR GLY LYS GLY VAL VAL HIS ASP ASP SEQRES 30 A 478 MET GLU CYS SER HIS TYR MET LYS ASN PHE ASP VAL GLY SEQRES 31 A 478 HIS VAL PRO ILE ARG LEU PRO ARG THR LYS HIS LEU LEU SEQRES 32 A 478 ASN VAL ILE ASN GLU ASN PHE GLY THR LEU ALA PHE CYS SEQRES 33 A 478 ARG ARG TRP LEU ASP ARG LEU GLY GLU SER LYS TYR LEU SEQRES 34 A 478 MET ALA LEU LYS ASN LEU CYS ASP LEU GLY ILE VAL ASP SEQRES 35 A 478 PRO TYR PRO PRO LEU CYS ASP ILE LYS GLY SER TYR THR SEQRES 36 A 478 ALA GLN PHE GLU HIS THR ILE LEU LEU ARG PRO THR CYS SEQRES 37 A 478 LYS GLU VAL VAL SER ARG GLY ASP ASP TYR HET CO A 481 1 HET CO A 482 1 HET FUG A 480 33 HETNAM CO COBALT (II) ION HETNAM FUG FUMAGILLIN FORMUL 2 CO 2(CO 2+) FORMUL 4 FUG C26 H36 O7 FORMUL 5 HOH *204(H2 O) HELIX 1 1 ILE A 120 LEU A 123 1 4 HELIX 2 2 ALA A 157 TRP A 186 1 30 HELIX 3 3 MET A 193 ILE A 208 1 16 HELIX 4 4 PRO A 271 CYS A 290 5 20 HELIX 5 5 LEU A 297 SER A 310 1 14 HELIX 6 6 PRO A 397 ASN A 409 1 13 HELIX 7 7 ARG A 417 LEU A 423 1 7 HELIX 8 8 LEU A 429 ASP A 437 1 9 SHEET 1 A 6 GLN A 133 CYS A 135 0 SHEET 2 A 6 CYS A 468 VAL A 471 -1 N VAL A 471 O GLN A 133 SHEET 3 A 6 THR A 455 ARG A 465 -1 N ARG A 465 O CYS A 468 SHEET 4 A 6 VAL A 360 SER A 368 -1 N GLY A 367 O ALA A 456 SHEET 5 A 6 ASN A 329 ILE A 333 -1 N ILE A 333 O VAL A 360 SHEET 6 A 6 THR A 343 PRO A 345 -1 N VAL A 344 O GLY A 330 SHEET 1 B 3 GLY A 222 LEU A 225 0 SHEET 2 B 3 ILE A 247 ILE A 256 -1 N ASP A 251 O GLY A 222 SHEET 3 B 3 ARG A 259 THR A 268 -1 N VAL A 267 O CYS A 248 SHEET 1 C 2 GLU A 312 ILE A 315 0 SHEET 2 C 2 LYS A 318 GLN A 321 -1 N TYR A 320 O VAL A 313 SHEET 1 D 2 HIS A 382 LYS A 385 0 SHEET 2 D 2 VAL A 441 TYR A 444 -1 N TYR A 444 O HIS A 382 SHEET 1 E 2 ALA A 215 PHE A 219 0 SHEET 2 E 2 GLY A 253 ILE A 256 -1 N HIS A 255 O GLY A 216 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.03 LINK NE2 HIS A 231 C11 FUG A 480 1555 1555 1.48 LINK OD1 ASP A 251 CO CO A 482 1555 1555 2.32 LINK OD2 ASP A 251 CO CO A 482 1555 1555 2.32 LINK OD2 ASP A 262 CO CO A 481 1555 1555 2.20 LINK OD1 ASP A 262 CO CO A 482 1555 1555 1.88 LINK OD2 ASP A 262 CO CO A 482 1555 1555 2.59 LINK NE2 HIS A 331 CO CO A 481 1555 1555 2.49 LINK OE2 GLU A 364 CO CO A 481 1555 1555 2.27 LINK OE2 GLU A 459 CO CO A 481 1555 1555 2.29 LINK OE1 GLU A 459 CO CO A 482 1555 1555 2.43 LINK CO CO A 481 O HOH A 662 1555 1555 2.36 LINK CO CO A 482 O HOH A 662 1555 1555 2.13 SITE 1 CO2 5 ASP A 251 ASP A 262 GLU A 459 HIS A 331 SITE 2 CO2 5 GLU A 364 SITE 1 BND 2 HIS A 231 FUG A 480 SITE 1 AC1 7 ASP A 262 HIS A 331 GLU A 364 GLU A 459 SITE 2 AC1 7 FUG A 480 CO A 482 HOH A 662 SITE 1 AC2 5 ASP A 251 ASP A 262 GLU A 459 CO A 481 SITE 2 AC2 5 HOH A 662 SITE 1 AC3 14 HIS A 231 ASN A 327 LEU A 328 ASN A 329 SITE 2 AC3 14 HIS A 331 HIS A 339 GLU A 364 HIS A 375 SITE 3 AC3 14 ASP A 376 TYR A 444 CO A 481 HOH A 556 SITE 4 AC3 14 HOH A 625 HOH A 662 CRYST1 90.700 99.580 101.950 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009809 0.00000