PDB Short entry for 1BTH HEADER COMPLEX (SERINE PROTEASE/INHIBITOR) 03-DEC-96 1BTH TITLE STRUCTURE OF THROMBIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN; COMPND 3 CHAIN: L, J; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: THROMBIN; COMPND 9 CHAIN: H, K; COMPND 10 EC: 3.4.21.5; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: BOVINE PANCREATIC TRYPSIN INHIBITOR; COMPND 15 CHAIN: P, Q SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: LUNG; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: GOLDEN HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BHK-21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: CATTLE; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 ORGAN: LUNG; SOURCE 15 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: GOLDEN HAMSTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: BHK-21; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 21 ORGANISM_COMMON: CATTLE; SOURCE 22 ORGANISM_TAXID: 9913; SOURCE 23 ORGAN: LUNG KEYWDS THROMBIN INHIBITOR, SERINE PROTEINASE KUNITZ-LIKE INHIBITOR, (SERINE KEYWDS 2 PROTEASE/INHIBITOR), COMPLEX (SERINE PROTEASE-INHIBITOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.VAN DE LOCHT,W.BODE,M.T.STUBBS REVDAT 4 03-NOV-21 1BTH 1 SEQADV REVDAT 3 24-FEB-09 1BTH 1 VERSN REVDAT 2 01-APR-03 1BTH 1 JRNL REVDAT 1 24-DEC-97 1BTH 0 JRNL AUTH A.VAN DE LOCHT,W.BODE,R.HUBER,B.F.LE BONNIEC,S.R.STONE, JRNL AUTH 2 C.T.ESMON,M.T.STUBBS JRNL TITL THE THROMBIN E192Q-BPTI COMPLEX REVEALS GROSS STRUCTURAL JRNL TITL 2 REARRANGEMENTS: IMPLICATIONS FOR THE INTERACTION WITH JRNL TITL 3 ANTITHROMBIN AND THROMBOMODULIN. JRNL REF EMBO J. V. 16 2977 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9214615 JRNL DOI 10.1093/EMBOJ/16.11.2977 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VAN DE LOCHT,M.T.STUBBS,W.BODE,T.FRIEDRICH, REMARK 1 AUTH 2 C.BOLLSCHWEILER,W.HOFFKEN,R.HUBER REMARK 1 TITL THE ORNITHODORIN-THROMBIN CRYSTAL STRUCTURE, A KEY TO THE REMARK 1 TITL 2 TAP ENIGMA? REMARK 1 REF EMBO J. V. 15 6011 1996 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.VAN DE LOCHT,D.LAMBA,M.BAUER,R.HUBER,T.FRIEDRICH,B.KROGER, REMARK 1 AUTH 2 W.HOFFKEN,W.BODE REMARK 1 TITL TWO HEADS ARE BETTER THAN ONE: CRYSTAL STRUCTURE OF THE REMARK 1 TITL 2 INSECT DERIVED DOUBLE DOMAIN KAZAL INHIBITOR RHODNIIN IN REMARK 1 TITL 3 COMPLEX WITH THROMBIN REMARK 1 REF EMBO J. V. 14 5149 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 3 REMARK 1 AUTH W.BODE,I.MAYR,U.BAUMANN,R.HUBER,S.R.STONE,J.HOFSTEENGE REMARK 1 TITL THE REFINED 1.9 A CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN: REMARK 1 TITL 2 INTERACTION WITH D-PHE-PRO-ARG CHLOROMETHYLKETONE AND REMARK 1 TITL 3 SIGNIFICANCE OF THE TYR-PRO-PRO-TRP INSERTION SEGMENT REMARK 1 REF EMBO J. V. 8 3467 1989 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 36032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.690 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109248 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L -3 REMARK 465 PHE L -2 REMARK 465 GLY L -1 REMARK 465 SER L 0 REMARK 465 ARG L 15 REMARK 465 ASP H 243 REMARK 465 GLN H 244 REMARK 465 PHE H 245 REMARK 465 GLY H 246 REMARK 465 GLU H 247 REMARK 465 THR J -3 REMARK 465 PHE J -2 REMARK 465 GLY J -1 REMARK 465 SER J 0 REMARK 465 ARG J 15 REMARK 465 ASP K 243 REMARK 465 GLN K 244 REMARK 465 PHE K 245 REMARK 465 GLY K 246 REMARK 465 GLU K 247 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER H 37 REMARK 475 LYS H 60F REMARK 475 PHE H 60H REMARK 475 THR H 60I REMARK 475 GLU H 61 REMARK 475 THR H 149A REMARK 475 ASN H 149B REMARK 475 GLY J 14M REMARK 475 SER K 37 REMARK 475 PHE K 60H REMARK 475 THR K 149A REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU L 1C CB CG CD OE1 OE2 REMARK 480 LYS L 14A CD CE NZ REMARK 480 ARG H 75 NH1 NH2 REMARK 480 ARG H 93 NH1 REMARK 480 TRP H 96 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP H 96 CZ2 CZ3 CH2 REMARK 480 ARG H 97 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS H 110 CB CG CD CE NZ REMARK 480 TRP H 148 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP H 148 CZ2 CZ3 CH2 REMARK 480 THR H 149 CB OG1 CG2 REMARK 480 VAL H 149C CB CG1 CG2 REMARK 480 LYS H 149E CB CG CD CE NZ REMARK 480 LYS H 169 CD CE NZ REMARK 480 ARG H 173 NH1 REMARK 480 GLU J 1C CB CG CD OE1 OE2 REMARK 480 ALA J 1B CB REMARK 480 LYS J 9 CD CE NZ REMARK 480 LYS J 10 NZ REMARK 480 ASP J 14L CG OD1 OD2 REMARK 480 GLN K 38 CD OE1 NE2 REMARK 480 LYS K 60F CD CE NZ REMARK 480 GLU K 61 CB CG CD OE1 OE2 REMARK 480 MET K 84 SD CE REMARK 480 LYS K 87 CE NZ REMARK 480 ARG K 93 CZ NH1 NH2 REMARK 480 TRP K 96 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP K 96 CZ2 CZ3 CH2 REMARK 480 ARG K 97 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS K 109 CB CG CD CE NZ REMARK 480 LYS K 145 CG CD CE NZ REMARK 480 THR K 147 CB OG1 CG2 REMARK 480 TRP K 148 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP K 148 CZ2 CZ3 CH2 REMARK 480 THR K 149 CB OG1 CG2 REMARK 480 ASN K 149B CB CG OD1 ND2 REMARK 480 VAL K 149C CB CG1 CG2 REMARK 480 LYS K 149E CB CG CD CE NZ REMARK 480 ARG K 175 CG CD NE CZ NH1 NH2 REMARK 480 ASP K 186A CG OD1 OD2 REMARK 480 LYS K 236 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU J 1C C ALA J 1B N 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 97 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 CYS H 182 CA - CB - SG ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG K 97 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -85.84 -133.74 REMARK 500 ASP L 14L 77.65 68.29 REMARK 500 GLU H 18 12.83 59.62 REMARK 500 GLN H 38 -23.65 -38.49 REMARK 500 GLU H 39 2.94 -37.86 REMARK 500 PHE H 60H 10.14 -141.67 REMARK 500 GLU H 61 81.58 46.54 REMARK 500 ASN H 62 -164.97 -176.89 REMARK 500 ASP H 63 1.30 85.02 REMARK 500 HIS H 71 -57.22 -127.27 REMARK 500 ARG H 77A -81.87 -37.90 REMARK 500 PRO H 92 -9.12 -55.45 REMARK 500 GLU H 97A -121.85 -172.16 REMARK 500 ARG H 126 -54.45 -27.13 REMARK 500 THR H 149 -78.01 -161.87 REMARK 500 SER H 214 -64.39 -131.17 REMARK 500 PHE J 7 -82.72 -130.63 REMARK 500 ASP J 14L 84.74 56.11 REMARK 500 GLU K 39 48.80 -64.52 REMARK 500 LEU K 40 116.64 -165.04 REMARK 500 PHE K 60H -5.03 -142.24 REMARK 500 GLU K 61 82.11 28.73 REMARK 500 ASN K 62 102.91 172.52 REMARK 500 ASP K 63 7.46 -171.06 REMARK 500 HIS K 71 -55.95 -132.45 REMARK 500 ASN K 78 -3.86 75.40 REMARK 500 GLU K 97A -118.88 -178.91 REMARK 500 SER K 115 -163.01 -164.79 REMARK 500 HIS K 119 134.63 -170.84 REMARK 500 THR K 149 -66.37 -148.50 REMARK 500 SER K 195 150.72 -49.12 REMARK 500 SER K 214 -71.68 -126.53 REMARK 500 ASN Q 44 102.70 -161.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR K 60A 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BTH L -3 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1BTH H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1BTH J -3 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1BTH K 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1BTH P 1 58 UNP P00974 BPT1_BOVIN 36 93 DBREF 1BTH Q 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 1BTH THR H 149 UNP P00734 ALA 513 CONFLICT SEQADV 1BTH GLN H 192 UNP P00734 GLU 565 ENGINEERED MUTATION SEQADV 1BTH THR K 149 UNP P00734 ALA 513 CONFLICT SEQADV 1BTH GLN K 192 UNP P00734 GLU 565 ENGINEERED MUTATION SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR THR ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLN GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 J 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 J 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 J 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 K 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 K 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 K 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 K 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 K 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 K 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 K 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 K 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 K 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 K 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 K 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 K 259 LEU LYS GLU THR TRP THR THR ASN VAL GLY LYS GLY GLN SEQRES 13 K 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 K 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 K 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 K 259 LYS ARG GLY ASP ALA CYS GLN GLY ASP SER GLY GLY PRO SEQRES 17 K 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 K 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 K 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 K 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 P 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 P 58 CYS LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 P 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 P 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 P 58 ARG THR CYS GLY GLY ALA SEQRES 1 Q 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 Q 58 CYS LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 Q 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 Q 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 Q 58 ARG THR CYS GLY GLY ALA FORMUL 7 HOH *113(H2 O) HELIX 1 1 GLU L 1C ASP L 1A 5 3 HELIX 2 2 GLU L 8 LYS L 10 5 3 HELIX 3 3 GLU L 14C TYR L 14J 1 8 HELIX 4 4 ALA H 56 CYS H 58 5 3 HELIX 5 5 PRO H 60C ASP H 60E 5 3 HELIX 6 6 ARG H 126 LEU H 129C 1 7 HELIX 7 7 ARG H 165 SER H 171 1 7 HELIX 8 8 PRO H 186 GLU H 186B 5 3 HELIX 9 9 VAL H 231 VAL H 241 1 11 HELIX 10 10 GLU J 1C ASP J 1A 5 3 HELIX 11 11 GLU J 8 LYS J 10 5 3 HELIX 12 12 GLU J 14C TYR J 14J 1 8 HELIX 13 13 ALA K 56 LEU K 59 5 4 HELIX 14 14 PRO K 60C ASP K 60E 5 3 HELIX 15 15 ARG K 126 LEU K 129C 1 7 HELIX 16 16 ARG K 165 LYS K 169 1 5 HELIX 17 17 PHE K 232 VAL K 241 5 10 HELIX 18 18 ASP P 3 CYS P 5 5 3 HELIX 19 19 ALA P 48 CYS P 55 1 8 HELIX 20 20 ASP Q 3 LEU Q 6 5 4 HELIX 21 21 ALA Q 48 CYS Q 55 1 8 SHEET 1 A 4 LEU H 40 SER H 45 0 SHEET 2 A 4 GLN H 30 ARG H 35 -1 N ARG H 35 O LEU H 40 SHEET 3 A 4 LEU H 65 ILE H 68 -1 N ARG H 67 O MET H 32 SHEET 4 A 4 LYS H 81 SER H 83 -1 N SER H 83 O VAL H 66 SHEET 1 B 3 TRP H 51 THR H 54 0 SHEET 2 B 3 ALA H 104 LEU H 108 -1 N MET H 106 O VAL H 52 SHEET 3 B 3 LEU H 85 ILE H 90 -1 N TYR H 89 O LEU H 105 SHEET 1 C 2 LYS H 135 GLY H 140 0 SHEET 2 C 2 GLN H 156 PRO H 161 -1 N LEU H 160 O GLY H 136 SHEET 1 D 4 MET H 180 ALA H 183 0 SHEET 2 D 4 GLY H 226 HIS H 230 -1 N TYR H 228 O PHE H 181 SHEET 3 D 4 TRP H 207 TRP H 215 -1 N TRP H 215 O PHE H 227 SHEET 4 D 4 PRO H 198 LYS H 202 -1 N MET H 201 O TYR H 208 SHEET 1 E 4 LEU K 41 SER K 45 0 SHEET 2 E 4 GLN K 30 PHE K 34 -1 N LEU K 33 O CYS K 42 SHEET 3 E 4 LEU K 65 ILE K 68 -1 N ARG K 67 O MET K 32 SHEET 4 E 4 LYS K 81 SER K 83 -1 N SER K 83 O VAL K 66 SHEET 1 F 3 TRP K 51 THR K 54 0 SHEET 2 F 3 ALA K 104 LEU K 108 -1 N MET K 106 O VAL K 52 SHEET 3 F 3 LEU K 85 ILE K 90 -1 N TYR K 89 O LEU K 105 SHEET 1 G 2 LYS K 135 GLY K 140 0 SHEET 2 G 2 GLN K 156 PRO K 161 -1 N LEU K 160 O GLY K 136 SHEET 1 H 4 MET K 180 ALA K 183 0 SHEET 2 H 4 GLY K 226 HIS K 230 -1 N TYR K 228 O PHE K 181 SHEET 3 H 4 TRP K 207 TRP K 215 -1 N TRP K 215 O PHE K 227 SHEET 4 H 4 PRO K 198 LYS K 202 -1 N MET K 201 O TYR K 208 SHEET 1 I 2 ILE P 18 ASN P 24 0 SHEET 2 I 2 LEU P 29 TYR P 35 -1 N TYR P 35 O ILE P 18 SHEET 1 J 2 ILE Q 18 ASN Q 24 0 SHEET 2 J 2 LEU Q 29 TYR Q 35 -1 N TYR Q 35 O ILE Q 18 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.01 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.02 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.02 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.03 SSBOND 5 CYS J 1 CYS K 122 1555 1555 2.02 SSBOND 6 CYS K 42 CYS K 58 1555 1555 2.02 SSBOND 7 CYS K 168 CYS K 182 1555 1555 2.02 SSBOND 8 CYS K 191 CYS K 220 1555 1555 2.01 SSBOND 9 CYS P 5 CYS P 55 1555 1555 2.02 SSBOND 10 CYS P 14 CYS P 38 1555 1555 2.03 SSBOND 11 CYS P 30 CYS P 51 1555 1555 2.02 SSBOND 12 CYS Q 5 CYS Q 55 1555 1555 2.03 SSBOND 13 CYS Q 14 CYS Q 38 1555 1555 2.03 SSBOND 14 CYS Q 30 CYS Q 51 1555 1555 2.01 CISPEP 1 SER H 37 PRO H 37A 0 -0.44 CISPEP 2 SER K 37 PRO K 37A 0 -0.23 CRYST1 71.200 74.500 83.400 90.00 92.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014045 0.000000 0.000613 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012002 0.00000