PDB Short entry for 1BVY HEADER OXIDOREDUCTASE 21-SEP-98 1BVY TITLE COMPLEX OF THE HEME AND FMN-BINDING DOMAINS OF THE CYTOCHROME P450(BM- TITLE 2 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CYTOCHROME P450 BM-3); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEME-BINDING DOMAIN; COMPND 5 EC: 1.14.14.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN (CYTOCHROME P450 BM-3); COMPND 9 CHAIN: F; COMPND 10 FRAGMENT: FMN-BINDING DOMAIN; COMPND 11 EC: 1.14.14.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: DH5AF'IQ; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPROEX; SOURCE 8 OTHER_DETAILS: SYNTHETIC GENE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 11 ORGANISM_TAXID: 1404; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: DH5AF'IQ; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PPROEX; SOURCE 16 OTHER_DETAILS: SYNTHETIC GENE KEYWDS FATTY ACID MONOOXYGENASE, HEMOPROTEIN, FLAVOPROTEIN, ELECTRON KEYWDS 2 TRANSFER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.F.SEVRIOUKOVA,H.LI,H.ZHANG,J.A.PETERSON,T.L.POULOS REVDAT 4 09-AUG-23 1BVY 1 REMARK LINK REVDAT 3 24-FEB-09 1BVY 1 VERSN REVDAT 2 29-DEC-99 1BVY 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 23-FEB-99 1BVY 0 JRNL AUTH I.F.SEVRIOUKOVA,H.LI,H.ZHANG,J.A.PETERSON,T.L.POULOS JRNL TITL STRUCTURE OF A CYTOCHROME P450-REDOX PARTNER JRNL TITL 2 ELECTRON-TRANSFER COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 1863 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10051560 JRNL DOI 10.1073/PNAS.96.5.1863 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.187 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4412 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 62655 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.169 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3917 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 54470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 947 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 ANGLE DISTANCES (A) : 0.020 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YES REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MOLECULE A OF P450(BM3) HEME DOMAIN AND REMARK 200 FALVODOXIN(PDB ENDRY 3FX2) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIQUID-LIQUID FREE INTERFACE DIFFUSION REMARK 280 AT ROOM TEMPERATURE IN PEG 8000, PIPES PH 6.8, NH4CL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 MET A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 THR A 10 REMARK 465 PHE A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 PRO F 459 REMARK 465 SER F 460 REMARK 465 PRO F 461 REMARK 465 SER F 462 REMARK 465 THR F 463 REMARK 465 GLU F 464 REMARK 465 GLN F 465 REMARK 465 SER F 466 REMARK 465 ALA F 467 REMARK 465 LYS F 468 REMARK 465 LYS F 469 REMARK 465 VAL F 470 REMARK 465 ARG F 471 REMARK 465 LYS F 472 REMARK 465 LYS F 473 REMARK 465 ALA F 474 REMARK 465 GLU F 475 REMARK 465 ASN F 476 REMARK 465 ALA F 477 REMARK 465 HIS F 478 REMARK 465 ASP F 631 REMARK 465 ILE F 632 REMARK 465 GLU F 633 REMARK 465 ASN F 634 REMARK 465 SER F 635 REMARK 465 GLU F 636 REMARK 465 ASP F 637 REMARK 465 ASN F 638 REMARK 465 LYS F 639 REMARK 465 SER F 640 REMARK 465 THR F 641 REMARK 465 LEU F 642 REMARK 465 SER F 643 REMARK 465 LEU F 644 REMARK 465 GLN F 645 REMARK 465 PHE F 646 REMARK 465 VAL F 647 REMARK 465 ASP F 648 REMARK 465 SER F 649 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 MET B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 PHE B 11 REMARK 465 GLY B 12 REMARK 465 GLU B 13 REMARK 465 LEU B 14 REMARK 465 LYS B 15 REMARK 465 ASN B 16 REMARK 465 LEU B 17 REMARK 465 PRO B 18 REMARK 465 LEU B 19 REMARK 465 LEU B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU F 595 OH TYR F 627 2.18 REMARK 500 O HOH A 1277 O HOH A 1345 2.18 REMARK 500 O HOH A 1268 O HOH A 1419 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1356 O HOH B 1206 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 179 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 323 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG B 323 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 323 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 143.33 171.11 REMARK 500 ASP A 84 42.30 -94.33 REMARK 500 PHE A 158 40.91 -148.11 REMARK 500 GLU A 228 74.29 32.95 REMARK 500 GLN A 229 33.44 -82.56 REMARK 500 ASP A 231 53.64 -150.64 REMARK 500 ALA A 328 78.36 -114.25 REMARK 500 THR A 436 -129.74 -126.83 REMARK 500 LEU A 455 70.33 -103.32 REMARK 500 ASP F 517 35.87 -83.57 REMARK 500 ALA F 520 96.60 -61.39 REMARK 500 ASN F 522 42.24 -100.99 REMARK 500 ASP F 552 -81.12 -61.46 REMARK 500 GLN F 553 -72.11 -58.81 REMARK 500 GLU F 558 156.73 -33.93 REMARK 500 TYR F 564 -169.37 -122.57 REMARK 500 TRP F 574 72.26 -111.00 REMARK 500 ALA F 575 -94.15 -6.58 REMARK 500 ALA F 591 37.66 -82.72 REMARK 500 LYS F 592 6.14 -155.39 REMARK 500 ASN F 596 94.51 -53.62 REMARK 500 ARG F 600 159.22 -47.09 REMARK 500 ASP F 607 -105.76 -145.51 REMARK 500 ASP F 608 66.52 -116.62 REMARK 500 ALA F 625 -76.86 -56.48 REMARK 500 PHE F 628 -100.91 -100.77 REMARK 500 ASP B 84 39.59 -99.88 REMARK 500 PHE B 158 31.50 -140.98 REMARK 500 GLU B 228 29.00 -178.63 REMARK 500 GLN B 229 170.53 -37.78 REMARK 500 SER B 230 -149.49 -106.71 REMARK 500 ASP B 231 57.65 -143.69 REMARK 500 ASP B 232 -168.02 -114.77 REMARK 500 ALA B 328 78.57 -116.12 REMARK 500 GLU B 344 -1.87 -153.26 REMARK 500 ASP B 370 56.19 -112.15 REMARK 500 THR B 436 -129.02 -123.65 REMARK 500 LEU B 455 -156.36 -139.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1000 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A1000 NA 98.6 REMARK 620 3 HEM A1000 NB 91.4 90.0 REMARK 620 4 HEM A1000 NC 84.6 176.8 90.5 REMARK 620 5 HEM A1000 ND 86.6 89.8 177.9 89.9 REMARK 620 6 EDO A1003 O1 176.2 85.0 87.3 91.8 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B1001 NA 98.7 REMARK 620 3 HEM B1001 NB 91.5 90.8 REMARK 620 4 HEM B1001 NC 81.5 178.7 90.5 REMARK 620 5 HEM B1001 ND 93.3 88.8 175.2 89.9 REMARK 620 6 EDO B1004 O2 176.0 85.1 89.8 94.6 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN F 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1007 DBREF 1BVY A 1 458 UNP P14779 CPXB_BACME 1 458 DBREF 1BVY F 459 649 UNP P14779 CPXB_BACME 459 649 DBREF 1BVY B 1 458 UNP P14779 CPXB_BACME 1 458 SEQRES 1 A 458 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 458 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 458 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 458 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 458 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 458 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 458 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 A 458 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 458 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 458 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 458 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 458 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 458 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 458 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 458 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 458 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 458 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 458 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 458 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 458 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 458 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 458 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 A 458 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 458 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 A 458 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 458 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 458 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 458 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 458 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 458 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 458 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 458 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 458 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 458 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 458 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 A 458 GLY GLY ILE SEQRES 1 F 191 PRO SER PRO SER THR GLU GLN SER ALA LYS LYS VAL ARG SEQRES 2 F 191 LYS LYS ALA GLU ASN ALA HIS ASN THR PRO LEU LEU VAL SEQRES 3 F 191 LEU TYR GLY SER ASN MET GLY THR ALA GLU GLY THR ALA SEQRES 4 F 191 ARG ASP LEU ALA ASP ILE ALA MET SER LYS GLY PHE ALA SEQRES 5 F 191 PRO GLN VAL ALA THR LEU ASP SER HIS ALA GLY ASN LEU SEQRES 6 F 191 PRO ARG GLU GLY ALA VAL LEU ILE VAL THR ALA SER TYR SEQRES 7 F 191 ASN GLY HIS PRO PRO ASP ASN ALA LYS GLN PHE VAL ASP SEQRES 8 F 191 TRP LEU ASP GLN ALA SER ALA ASP GLU VAL LYS GLY VAL SEQRES 9 F 191 ARG TYR SER VAL PHE GLY CYS GLY ASP LYS ASN TRP ALA SEQRES 10 F 191 THR THR TYR GLN LYS VAL PRO ALA PHE ILE ASP GLU THR SEQRES 11 F 191 LEU ALA ALA LYS GLY ALA GLU ASN ILE ALA ASP ARG GLY SEQRES 12 F 191 GLU ALA ASP ALA SER ASP ASP PHE GLU GLY THR TYR GLU SEQRES 13 F 191 GLU TRP ARG GLU HIS MET TRP SER ASP VAL ALA ALA TYR SEQRES 14 F 191 PHE ASN LEU ASP ILE GLU ASN SER GLU ASP ASN LYS SER SEQRES 15 F 191 THR LEU SER LEU GLN PHE VAL ASP SER SEQRES 1 B 458 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 B 458 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 B 458 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 B 458 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 B 458 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 B 458 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 B 458 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 B 458 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 B 458 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 B 458 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 B 458 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 B 458 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 B 458 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 B 458 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 B 458 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 B 458 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 B 458 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 B 458 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 B 458 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 B 458 PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 B 458 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 B 458 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 B 458 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 B 458 ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU LYS SEQRES 25 B 458 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 B 458 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 B 458 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 B 458 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 B 458 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 B 458 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 B 458 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 B 458 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 B 458 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 B 458 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 B 458 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 B 458 GLY GLY ILE HET HEM A1000 43 HET EDO A1003 4 HET EDO A1006 4 HET FMN F1002 31 HET HEM B1001 43 HET EDO B1004 4 HET EDO B1005 4 HET EDO B1007 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 7 FMN C17 H21 N4 O9 P FORMUL 12 HOH *947(H2 O) HELIX 1 1 PRO A 25 LEU A 36 1 12 HELIX 2 2 GLN A 55 ALA A 61 1 7 HELIX 3 3 GLN A 73 ALA A 82 1 10 HELIX 4 4 LEU A 86 THR A 88 5 3 HELIX 5 5 LYS A 94 PHE A 107 1 14 HELIX 6 6 ALA A 111 GLU A 131 5 21 HELIX 7 7 VAL A 141 PHE A 158 1 18 HELIX 8 8 SER A 164 TYR A 166 5 3 HELIX 9 9 PRO A 172 GLN A 189 1 18 HELIX 10 10 PRO A 196 SER A 226 5 31 HELIX 11 11 LEU A 233 ASN A 239 1 7 HELIX 12 12 ASP A 251 LYS A 282 1 32 HELIX 13 13 PRO A 284 VAL A 297 1 14 HELIX 14 14 TYR A 305 GLN A 310 1 6 HELIX 15 15 LYS A 312 TRP A 325 1 14 HELIX 16 16 ILE A 357 ARG A 362 1 6 HELIX 17 17 LYS A 364 TRP A 367 1 4 HELIX 18 18 PRO A 376 PHE A 379 5 4 HELIX 19 19 PRO A 382 ALA A 384 5 3 HELIX 20 20 GLY A 396 ARG A 398 5 3 HELIX 21 21 GLN A 403 HIS A 420 1 18 HELIX 22 22 THR F 492 LYS F 507 1 16 HELIX 23 23 LEU F 516 SER F 518 5 3 HELIX 24 24 LYS F 545 ASP F 552 1 8 HELIX 25 25 ALA F 575 THR F 577 5 3 HELIX 26 26 LYS F 580 ALA F 590 1 11 HELIX 27 27 PHE F 609 TYR F 627 1 19 HELIX 28 28 PRO B 25 LEU B 36 1 12 HELIX 29 29 GLN B 55 ALA B 61 1 7 HELIX 30 30 GLN B 73 ALA B 82 1 10 HELIX 31 31 LYS B 94 PHE B 107 1 14 HELIX 32 32 GLN B 109 GLU B 131 1 23 HELIX 33 33 VAL B 141 PHE B 158 1 18 HELIX 34 34 SER B 164 TYR B 166 5 3 HELIX 35 35 PRO B 172 GLN B 189 1 18 HELIX 36 36 PRO B 196 ALA B 225 5 30 HELIX 37 37 LEU B 233 ASN B 239 1 7 HELIX 38 38 ASP B 251 LYS B 282 1 32 HELIX 39 39 PRO B 284 VAL B 297 1 14 HELIX 40 40 TYR B 305 GLN B 310 1 6 HELIX 41 41 LYS B 312 LEU B 324 1 13 HELIX 42 42 ILE B 357 ARG B 362 1 6 HELIX 43 43 LYS B 364 TRP B 367 1 4 HELIX 44 44 PRO B 376 PHE B 379 5 4 HELIX 45 45 PRO B 382 ALA B 384 5 3 HELIX 46 46 GLY B 396 ARG B 398 5 3 HELIX 47 47 GLN B 403 HIS B 420 1 18 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 ARG A 47 LEU A 52 -1 N TYR A 51 O PHE A 40 SHEET 3 A 5 GLU A 352 LEU A 356 1 N GLU A 352 O ARG A 50 SHEET 4 A 5 ALA A 330 ALA A 335 -1 N LEU A 333 O LEU A 353 SHEET 5 A 5 PHE A 67 LYS A 69 -1 N ASP A 68 O TYR A 334 SHEET 1 B 2 THR A 339 LEU A 341 0 SHEET 2 B 2 TYR A 345 LEU A 347 -1 N LEU A 347 O THR A 339 SHEET 1 C 2 PHE A 421 GLU A 424 0 SHEET 2 C 2 LYS A 447 SER A 450 -1 N LYS A 449 O ASP A 422 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 N LYS A 440 O LYS A 434 SHEET 1 E 5 GLN F 512 THR F 515 0 SHEET 2 E 5 LEU F 482 GLY F 487 1 N VAL F 484 O GLN F 512 SHEET 3 E 5 ALA F 528 ALA F 534 1 N ALA F 528 O LEU F 483 SHEET 4 E 5 TYR F 564 GLY F 570 1 N SER F 565 O VAL F 529 SHEET 5 E 5 GLY F 601 ASP F 604 1 N GLY F 601 O GLY F 568 SHEET 1 F 5 ILE B 39 GLU B 43 0 SHEET 2 F 5 VAL B 48 LEU B 52 -1 N TYR B 51 O PHE B 40 SHEET 3 F 5 GLU B 352 LEU B 356 1 N GLU B 352 O ARG B 50 SHEET 4 F 5 ALA B 330 ALA B 335 -1 N LEU B 333 O LEU B 353 SHEET 5 F 5 PHE B 67 LYS B 69 -1 N ASP B 68 O TYR B 334 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 N LEU B 347 O THR B 339 SHEET 1 H 2 PHE B 421 GLU B 424 0 SHEET 2 H 2 LYS B 447 SER B 450 -1 N LYS B 449 O ASP B 422 SHEET 1 I 2 ILE B 433 GLU B 435 0 SHEET 2 I 2 LEU B 439 PRO B 441 -1 N LYS B 440 O LYS B 434 LINK SG CYS A 400 FE HEM A1000 1555 1555 2.25 LINK FE HEM A1000 O1 EDO A1003 1555 1555 2.15 LINK SG CYS B 400 FE HEM B1001 1555 1555 2.27 LINK FE HEM B1001 O2 EDO B1004 1555 1555 2.20 SITE 1 AC1 24 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 24 ALA A 264 GLY A 265 THR A 268 THR A 269 SITE 3 AC1 24 THR A 327 PHE A 331 PRO A 392 PHE A 393 SITE 4 AC1 24 GLY A 394 ARG A 398 ALA A 399 CYS A 400 SITE 5 AC1 24 GLY A 402 EDO A1003 HOH A1029 HOH A1042 SITE 6 AC1 24 HOH A1043 HOH A1067 HOH A1111 HOH A1147 SITE 1 AC2 21 SER F 488 ASN F 489 MET F 490 GLY F 491 SITE 2 AC2 21 THR F 492 ALA F 493 ALA F 534 SER F 535 SITE 3 AC2 21 TYR F 536 ASN F 537 GLY F 538 CYS F 569 SITE 4 AC2 21 GLY F 570 ASP F 571 TRP F 574 THR F 577 SITE 5 AC2 21 TYR F 578 GLN F 579 HOH F1007 HOH F1026 SITE 6 AC2 21 HOH F1034 SITE 1 AC3 24 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC3 24 ALA B 264 GLY B 265 THR B 268 THR B 269 SITE 3 AC3 24 LEU B 272 THR B 327 PHE B 331 PRO B 392 SITE 4 AC3 24 PHE B 393 GLY B 394 ARG B 398 ALA B 399 SITE 5 AC3 24 CYS B 400 EDO B1004 HOH B1021 HOH B1087 SITE 6 AC3 24 HOH B1089 HOH B1090 HOH B1091 HOH B1118 SITE 1 AC4 6 PHE A 87 ALA A 264 THR A 268 ALA A 328 SITE 2 AC4 6 HEM A1000 HOH A1188 SITE 1 AC5 6 PHE B 87 ALA B 264 THR B 268 ALA B 328 SITE 2 AC5 6 HEM B1001 HOH B1045 SITE 1 AC6 3 ILE B 39 ARG B 50 TYR B 345 SITE 1 AC7 5 PRO A 105 SER A 108 GLN A 110 GLY F 495 SITE 2 AC7 5 ASP F 499 SITE 1 AC8 6 TRP B 130 LEU B 133 ALA B 448 HOH B1048 SITE 2 AC8 6 HOH B1049 HOH B1179 CRYST1 58.840 94.680 209.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004783 0.00000 MTRIX1 1 -0.999966 -0.006037 0.005567 18.35050 1 MTRIX2 1 -0.004931 0.983495 0.180870 -18.36810 1 MTRIX3 1 -0.006567 0.180836 -0.983491 202.85629 1