PDB Short entry for 1BZO HEADER OXIDOREDUCTASE 02-NOV-98 1BZO TITLE THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE TITLE 2 FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (SUPEROXIDE DISMUTASE); COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM LEIOGNATHI; SOURCE 3 ORGANISM_TAXID: 658; SOURCE 4 CELLULAR_LOCATION: PERIPLASMIC SPACE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOMERIC CU, ZN SUPEROXIDE DISMUTASE, PROTEIN-SUBUNIT RECOGNITION, KEYWDS 2 PROTEIN ELECTROSTATIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BORDO,D.MATAK,K.DJINOVIC-CARUGO,C.ROSANO,A.PESCE,M.BOLOGNESI, AUTHOR 2 M.E.STROPPOLO,M.FALCONI,A.BATTISTONI,A.DESIDERI REVDAT 7 03-APR-24 1BZO 1 REMARK REVDAT 6 27-DEC-23 1BZO 1 REMARK REVDAT 5 24-FEB-09 1BZO 1 VERSN REVDAT 4 27-DEC-00 1BZO 1 HEADER REMARK REVDAT 3 20-MAY-99 1BZO 1 SEQRES REVDAT 2 20-APR-99 1BZO 1 BIOMT REVDAT 1 09-APR-99 1BZO 0 JRNL AUTH D.BORDO,D.MATAK,K.DJINOVIC-CARUGO,C.ROSANO,A.PESCE, JRNL AUTH 2 M.BOLOGNESI,M.E.STROPPOLO,M.FALCONI,A.BATTISTONI,A.DESIDERI JRNL TITL EVOLUTIONARY CONSTRAINTS FOR DIMER FORMATION IN PROKARYOTIC JRNL TITL 2 CU,ZN SUPEROXIDE DISMUTASE. JRNL REF J.MOL.BIOL. V. 285 283 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9878406 JRNL DOI 10.1006/JMBI.1998.2267 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.BOURNE,S.M.REDFORD,H.M.STEINMAN,J.R.LEPOCK,J.A.TAINER, REMARK 1 AUTH 2 E.D.GETZOFF REMARK 1 TITL NOVEL DIMERIC INTERFACE AND ELECTROSTATIC RECOGNITION IN REMARK 1 TITL 2 BACTERIAL CU,ZN SUPEROXIDE DISMUTASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 93 12774 1996 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 8075 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1900 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 394 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 8469 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.018 ; 5.500 ; 1137 REMARK 3 BOND ANGLES (DEGREES) : 2.620 ; 9.500 ; 1533 REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.017 ; 5.500 ; 27 REMARK 3 GENERAL PLANES (A) : 0.018 ; 25.500; 169 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 4.250 ; 15.000; 1137 REMARK 3 NON-BONDED CONTACTS (A) : 0.067 ; 21.000; 20 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.77 REMARK 3 BSOL : 206.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PREVIOUS MODEL OF THE PROTEIN IN SPACE GROUP C2 REMARK 200 NOT DEPOSITED IN PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8,000 25%, NACL 100 MM, SODIUM REMARK 280 ACETATE 50 MM, PH 4, T=28C REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.44500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.08298 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.00333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.44500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.08298 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.00333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.44500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.08298 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.00333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.44500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.08298 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.00333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.44500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.08298 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.00333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.44500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.08298 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.00333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.16596 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.00667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.16596 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.00667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.16596 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 66.00667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.16596 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.00667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.16596 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 66.00667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.16596 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 66.00667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 2 O CG CD OE1 NE2 REMARK 480 ASP A 3 CA REMARK 480 LEU A 4 CD1 CD2 REMARK 480 THR A 5 OG1 REMARK 480 LYS A 7 CG CD NZ REMARK 480 THR A 9 CG2 REMARK 480 GLN A 10 CG REMARK 480 LYS A 13 CG CD CE NZ REMARK 480 GLU A 19 CD REMARK 480 GLU A 32 CG REMARK 480 GLN A 47 CD OE1 REMARK 480 LYS A 53C CB CG CD CE NZ REMARK 480 LYS A 53F CG REMARK 480 HIS A 66 NE2 REMARK 480 ASN A 68 CG OD1 ND2 REMARK 480 LYS A 79 CE NZ REMARK 480 ASN A 90 OD1 REMARK 480 LYS A 108 CD CE NZ REMARK 480 LYS A 111 CG CD CE NZ REMARK 480 LYS A 133 CE REMARK 480 ILE A 147 CD1 REMARK 480 GLN A 148 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 596 O HOH A 596 4555 0.67 REMARK 500 O HOH A 508 O HOH A 508 12555 1.83 REMARK 500 O HOH A 542 O HOH A 542 18655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 53B CD GLU A 53B OE2 0.069 REMARK 500 GLU A 65 CD GLU A 65 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 53D CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 THR A 67 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 141 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 45.11 -86.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ACTIVE SITE CATALYTIC ION COORDINATED TO REMARK 600 HIS44, HIS46, HIS61 AND HIS118 REMARK 600 REMARK 600 ACTIVE SITE METAL ION COORDINATED TO REMARK 600 HIS61, HIS69, HIS78 AND ASP81 REMARK 600 REMARK 600 URANYL ATOMS USED TO SOLVE A PREVIOUS REMARK 600 STRUCTURE IN C2 SPACE GROUP (DATA NOT REMARK 600 SUBMITTED) REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IUM A 502 REMARK 610 IUM A 559 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 152 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 ND1 REMARK 620 2 HIS A 46 NE2 142.0 REMARK 620 3 HIS A 118 NE2 101.9 116.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 151 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HIS A 69 ND1 109.2 REMARK 620 3 HIS A 78 ND1 100.7 123.6 REMARK 620 4 ASP A 81 OD1 110.5 97.3 115.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, REMARK 800 HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC REMARK 800 ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE REMARK 800 ZINC ION REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE CU,ZN COORDINATION SPHERE. HIS44, REMARK 800 HIS46, HIS61 AND HIS118 ARE COORDINATE TO THE COPPER CATALYTIC REMARK 800 ION, WHILE HIS61, HIS69, HIS78 AND ASP81 ARE COORDINATED TO THE REMARK 800 ZINC ION REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 559 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN USED IS A TRUNCATED FORM, WITHOUT THE FIRST 22 REMARK 999 RESIDUES DBREF 1BZO A 2 148 UNP P00446 SODC_PHOLE 23 173 SEQADV 1BZO ILE A 30 UNP P00446 THR 53 SEE REMARK 999 SEQRES 1 A 151 GLN ASP LEU THR VAL LYS MET THR ASP LEU GLN THR GLY SEQRES 2 A 151 LYS PRO VAL GLY THR ILE GLU LEU SER GLN ASN LYS TYR SEQRES 3 A 151 GLY VAL VAL PHE ILE PRO GLU LEU ALA ASP LEU THR PRO SEQRES 4 A 151 GLY MET HIS GLY PHE HIS ILE HIS GLN ASN GLY SER CYS SEQRES 5 A 151 ALA SER SER GLU LYS ASP GLY LYS VAL VAL LEU GLY GLY SEQRES 6 A 151 ALA ALA GLY GLY HIS TYR ASP PRO GLU HIS THR ASN LYS SEQRES 7 A 151 HIS GLY PHE PRO TRP THR ASP ASP ASN HIS LYS GLY ASP SEQRES 8 A 151 LEU PRO ALA LEU PHE VAL SER ALA ASN GLY LEU ALA THR SEQRES 9 A 151 ASN PRO VAL LEU ALA PRO ARG LEU THR LEU LYS GLU LEU SEQRES 10 A 151 LYS GLY HIS ALA ILE MET ILE HIS ALA GLY GLY ASP ASN SEQRES 11 A 151 HIS SER ASP MET PRO LYS ALA LEU GLY GLY GLY GLY ALA SEQRES 12 A 151 ARG VAL ALA CYS GLY VAL ILE GLN HET ZN A 151 1 HET CU A 152 1 HET IUM A 502 1 HET IUM A 559 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION HETNAM IUM URANYL (VI) ION FORMUL 2 ZN ZN 2+ FORMUL 3 CU CU 2+ FORMUL 4 IUM 2(O2 U 2+) FORMUL 6 HOH *102(H2 O) HELIX 1 1 GLY A 56 ALA A 58 5 3 HELIX 2 2 LYS A 108 LEU A 110 5 3 HELIX 3 3 ALA A 134 GLY A 137 5 4 SHEET 1 A 4 VAL A 97 ALA A 99 0 SHEET 2 A 4 GLY A 26 LEU A 33 -1 N PHE A 29 O VAL A 97 SHEET 3 A 4 PRO A 14 ASN A 23 -1 N ASN A 23 O GLY A 26 SHEET 4 A 4 ASP A 3 THR A 9 -1 N MET A 8 O VAL A 15 SHEET 1 B 2 GLY A 39 HIS A 41 0 SHEET 2 B 2 LEU A 85 VAL A 87 -1 N VAL A 87 O GLY A 39 SHEET 1 C 3 PHE A 43 HIS A 46 0 SHEET 2 C 3 ALA A 114 HIS A 118 -1 N MET A 116 O HIS A 44 SHEET 3 C 3 ARG A 141 VAL A 146 -1 N GLY A 145 O ILE A 115 SHEET 1 D 2 SER A 53A LYS A 53C 0 SHEET 2 D 2 LYS A 53F VAL A 53H-1 N VAL A 53H O SER A 53A SSBOND 1 CYS A 51 CYS A 144 1555 1555 2.03 LINK ND1 HIS A 44 CU CU A 152 1555 1555 2.13 LINK NE2 HIS A 46 CU CU A 152 1555 1555 2.05 LINK ND1 HIS A 61 ZN ZN A 151 1555 1555 1.95 LINK ND1 HIS A 69 ZN ZN A 151 1555 1555 1.92 LINK ND1 HIS A 78 ZN ZN A 151 1555 1555 2.00 LINK OD1 ASP A 81 ZN ZN A 151 1555 1555 2.09 LINK NE2 HIS A 118 CU CU A 152 1555 1555 2.22 CISPEP 1 MET A 131 PRO A 132 0 1.80 SITE 1 CU 4 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 1 ZN 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC1 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC2 4 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 1 AC3 1 ASP A 76 SITE 1 AC4 1 GLU A 53B CRYST1 86.890 86.890 99.010 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011509 0.006645 0.000000 0.00000 SCALE2 0.000000 0.013289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010100 0.00000