PDB Short entry for 1C3U HEADER LYASE 28-JUL-99 1C3U TITLE T. MARITIMA ADENYLOSUCCINATE LYASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.3.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS PURINE BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.TOTH,T.O.YEATES REVDAT 6 07-FEB-24 1C3U 1 REMARK REVDAT 5 04-OCT-17 1C3U 1 REMARK REVDAT 4 13-JUL-11 1C3U 1 VERSN REVDAT 3 24-FEB-09 1C3U 1 VERSN REVDAT 2 01-APR-03 1C3U 1 JRNL REVDAT 1 08-MAR-00 1C3U 0 JRNL AUTH E.A.TOTH,T.O.YEATES JRNL TITL THE STRUCTURE OF ADENYLOSUCCINATE LYASE, AN ENZYME WITH DUAL JRNL TITL 2 ACTIVITY IN THE DE NOVO PURINE BIOSYNTHETIC PATHWAY. JRNL REF STRUCTURE FOLD.DES. V. 8 163 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 10673438 JRNL DOI 10.1016/S0969-2126(00)00092-7 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 57257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2902 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SOFTWARE AT SYNCHROTRON REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57257 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 87.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE, 5 MM AMP, 1.8 M REMARK 280 AMMONIUM SULFATE, PH 9.00, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.52400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.52400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.24900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.10650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.24900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.10650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.52400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.24900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.10650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.52400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.24900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.10650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -236.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 257 REMARK 465 GLY A 258 REMARK 465 GLN A 259 REMARK 465 ARG A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 GLU A 431 REMARK 465 MET B 1 REMARK 465 LYS B 257 REMARK 465 GLY B 258 REMARK 465 GLN B 259 REMARK 465 ARG B 260 REMARK 465 GLY B 261 REMARK 465 SER B 262 REMARK 465 GLU B 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 2 CG1 CG2 REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ARG A 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 VAL B 2 CG1 CG2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 ARG B 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 ARG B 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 ARG B 377 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 GLU B 391 CG CD OE1 OE2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 GLU B 406 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 422 O HOH A 1015 2.17 REMARK 500 O HOH B 1097 O HOH B 2082 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2018 O HOH B 2076 4555 0.20 REMARK 500 O HOH B 2078 O HOH B 2144 4555 0.32 REMARK 500 O HOH A 1142 O HOH B 2081 8455 0.51 REMARK 500 OE1 GLU B 293 O HOH A 1047 4555 0.82 REMARK 500 O HOH A 1078 O HOH A 1144 4555 0.82 REMARK 500 CD GLU B 293 O HOH A 1047 4555 0.86 REMARK 500 OE2 GLU B 293 O HOH A 1047 4555 1.45 REMARK 500 OE1 GLU A 410 OE2 GLU B 36 5455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 9 N PRO A 9 CA -0.164 REMARK 500 SER B 8 CA SER B 8 C -0.187 REMARK 500 PRO B 9 N PRO B 9 CA 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 5 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 TYR A 5 CB - CG - CD1 ANGL. DEV. = -8.9 DEGREES REMARK 500 SER A 8 CA - C - O ANGL. DEV. = -15.6 DEGREES REMARK 500 PRO A 9 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLU A 108 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 170 CD - NE - CZ ANGL. DEV. = 28.1 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 209 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 418 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU A 426 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 427 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR B 5 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 TYR B 5 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR B 5 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 TYR B 5 CG - CD2 - CE2 ANGL. DEV. = -6.1 DEGREES REMARK 500 SER B 8 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 SER B 8 CA - C - N ANGL. DEV. = 26.1 DEGREES REMARK 500 SER B 8 O - C - N ANGL. DEV. = -27.6 DEGREES REMARK 500 PRO B 9 CA - N - CD ANGL. DEV. = -9.9 DEGREES REMARK 500 PRO B 9 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 12 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 21 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 47 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP B 55 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 SER B 103 N - CA - CB ANGL. DEV. = 9.2 DEGREES REMARK 500 LEU B 113 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG B 130 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 163 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 163 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 170 CD - NE - CZ ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG B 170 NH1 - CZ - NH2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 VAL B 209 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 VAL B 209 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 VAL B 213 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 4 -54.93 -21.11 REMARK 500 ALA A 145 -91.74 -112.00 REMARK 500 SER A 176 22.82 -75.97 REMARK 500 THR A 211 -135.67 -101.55 REMARK 500 HIS A 299 -123.31 48.14 REMARK 500 ARG A 301 148.71 154.98 REMARK 500 LYS A 364 20.74 -76.25 REMARK 500 ARG B 4 -50.44 -19.34 REMARK 500 ALA B 145 -93.46 -114.07 REMARK 500 THR B 211 -138.14 -100.86 REMARK 500 HIS B 299 -124.28 49.38 REMARK 500 ARG B 301 152.05 155.99 REMARK 500 LYS B 364 24.32 -75.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 8 -15.64 REMARK 500 SER B 8 -23.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 433 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C3C RELATED DB: PDB REMARK 900 T. MARITIMA ADENYLOSUCCINATE LYASE DBREF 1C3U A 1 431 UNP Q9X0I0 PUR8_THEMA 1 431 DBREF 1C3U B 1 431 UNP Q9X0I0 PUR8_THEMA 1 431 SEQRES 1 A 431 MET VAL GLU ARG TYR SER LEU SER PRO MET LYS ASP LEU SEQRES 2 A 431 TRP THR GLU GLU ALA LYS TYR ARG ARG TRP LEU GLU VAL SEQRES 3 A 431 GLU LEU ALA VAL THR ARG ALA TYR GLU GLU LEU GLY MET SEQRES 4 A 431 ILE PRO LYS GLY VAL THR GLU ARG ILE ARG ASN ASN ALA SEQRES 5 A 431 LYS ILE ASP VAL GLU LEU PHE LYS LYS ILE GLU GLU LYS SEQRES 6 A 431 THR ASN HIS ASP VAL VAL ALA PHE VAL GLU GLY ILE GLY SEQRES 7 A 431 SER MET ILE GLY GLU ASP SER ARG PHE PHE HIS TYR GLY SEQRES 8 A 431 LEU THR SER SER ASP VAL LEU ASP THR ALA ASN SER LEU SEQRES 9 A 431 ALA LEU VAL GLU ALA GLY LYS ILE LEU LEU GLU SER LEU SEQRES 10 A 431 LYS GLU PHE CYS ASP VAL LEU TRP GLU VAL ALA ASN ARG SEQRES 11 A 431 TYR LYS HIS THR PRO THR ILE GLY ARG THR HIS GLY VAL SEQRES 12 A 431 HIS ALA GLU PRO THR SER PHE GLY LEU LYS VAL LEU GLY SEQRES 13 A 431 TRP TYR SER GLU MET LYS ARG ASN VAL GLN ARG LEU GLU SEQRES 14 A 431 ARG ALA ILE GLU GLU VAL SER TYR GLY LYS ILE SER GLY SEQRES 15 A 431 ALA VAL GLY ASN TYR ALA ASN VAL PRO PRO GLU VAL GLU SEQRES 16 A 431 GLU LYS ALA LEU SER TYR LEU GLY LEU LYS PRO GLU PRO SEQRES 17 A 431 VAL SER THR GLN VAL VAL PRO ARG ASP ARG HIS ALA PHE SEQRES 18 A 431 TYR LEU SER THR LEU ALA ILE VAL ALA ALA GLY ILE GLU SEQRES 19 A 431 ARG ILE ALA VAL GLU ILE ARG HIS LEU GLN ARG THR GLU SEQRES 20 A 431 VAL LEU GLU VAL GLU GLU PRO PHE ARG LYS GLY GLN ARG SEQRES 21 A 431 GLY SER SER ALA MET PRO HIS LYS LYS ASN PRO ILE THR SEQRES 22 A 431 CYS GLU ARG LEU THR GLY LEU SER ARG MET MET ARG ALA SEQRES 23 A 431 TYR VAL ASP PRO SER LEU GLU ASN ILE ALA LEU TRP HIS SEQRES 24 A 431 GLU ARG ASP ILE SER HIS SER SER VAL GLU ARG TYR VAL SEQRES 25 A 431 PHE PRO ASP ALA THR GLN THR LEU TYR TYR MET ILE VAL SEQRES 26 A 431 THR ALA THR ASN VAL VAL ARG ASN MET LYS VAL ASN GLU SEQRES 27 A 431 GLU ARG MET LYS LYS ASN ILE ASP LEU THR LYS GLY LEU SEQRES 28 A 431 VAL PHE SER GLN ARG VAL LEU LEU LYS LEU ILE GLU LYS SEQRES 29 A 431 GLY LEU THR ARG LYS GLU ALA TYR ASP ILE VAL GLN ARG SEQRES 30 A 431 ASN ALA LEU LYS THR TRP ASN SER GLU LYS HIS PHE LEU SEQRES 31 A 431 GLU TYR LEU LEU GLU ASP GLU GLU VAL LYS LYS LEU VAL SEQRES 32 A 431 THR LYS GLU GLU LEU GLU GLU LEU PHE ASP ILE SER TYR SEQRES 33 A 431 TYR LEU LYS HIS VAL ASP HIS ILE PHE GLU ARG PHE GLU SEQRES 34 A 431 LYS GLU SEQRES 1 B 431 MET VAL GLU ARG TYR SER LEU SER PRO MET LYS ASP LEU SEQRES 2 B 431 TRP THR GLU GLU ALA LYS TYR ARG ARG TRP LEU GLU VAL SEQRES 3 B 431 GLU LEU ALA VAL THR ARG ALA TYR GLU GLU LEU GLY MET SEQRES 4 B 431 ILE PRO LYS GLY VAL THR GLU ARG ILE ARG ASN ASN ALA SEQRES 5 B 431 LYS ILE ASP VAL GLU LEU PHE LYS LYS ILE GLU GLU LYS SEQRES 6 B 431 THR ASN HIS ASP VAL VAL ALA PHE VAL GLU GLY ILE GLY SEQRES 7 B 431 SER MET ILE GLY GLU ASP SER ARG PHE PHE HIS TYR GLY SEQRES 8 B 431 LEU THR SER SER ASP VAL LEU ASP THR ALA ASN SER LEU SEQRES 9 B 431 ALA LEU VAL GLU ALA GLY LYS ILE LEU LEU GLU SER LEU SEQRES 10 B 431 LYS GLU PHE CYS ASP VAL LEU TRP GLU VAL ALA ASN ARG SEQRES 11 B 431 TYR LYS HIS THR PRO THR ILE GLY ARG THR HIS GLY VAL SEQRES 12 B 431 HIS ALA GLU PRO THR SER PHE GLY LEU LYS VAL LEU GLY SEQRES 13 B 431 TRP TYR SER GLU MET LYS ARG ASN VAL GLN ARG LEU GLU SEQRES 14 B 431 ARG ALA ILE GLU GLU VAL SER TYR GLY LYS ILE SER GLY SEQRES 15 B 431 ALA VAL GLY ASN TYR ALA ASN VAL PRO PRO GLU VAL GLU SEQRES 16 B 431 GLU LYS ALA LEU SER TYR LEU GLY LEU LYS PRO GLU PRO SEQRES 17 B 431 VAL SER THR GLN VAL VAL PRO ARG ASP ARG HIS ALA PHE SEQRES 18 B 431 TYR LEU SER THR LEU ALA ILE VAL ALA ALA GLY ILE GLU SEQRES 19 B 431 ARG ILE ALA VAL GLU ILE ARG HIS LEU GLN ARG THR GLU SEQRES 20 B 431 VAL LEU GLU VAL GLU GLU PRO PHE ARG LYS GLY GLN ARG SEQRES 21 B 431 GLY SER SER ALA MET PRO HIS LYS LYS ASN PRO ILE THR SEQRES 22 B 431 CYS GLU ARG LEU THR GLY LEU SER ARG MET MET ARG ALA SEQRES 23 B 431 TYR VAL ASP PRO SER LEU GLU ASN ILE ALA LEU TRP HIS SEQRES 24 B 431 GLU ARG ASP ILE SER HIS SER SER VAL GLU ARG TYR VAL SEQRES 25 B 431 PHE PRO ASP ALA THR GLN THR LEU TYR TYR MET ILE VAL SEQRES 26 B 431 THR ALA THR ASN VAL VAL ARG ASN MET LYS VAL ASN GLU SEQRES 27 B 431 GLU ARG MET LYS LYS ASN ILE ASP LEU THR LYS GLY LEU SEQRES 28 B 431 VAL PHE SER GLN ARG VAL LEU LEU LYS LEU ILE GLU LYS SEQRES 29 B 431 GLY LEU THR ARG LYS GLU ALA TYR ASP ILE VAL GLN ARG SEQRES 30 B 431 ASN ALA LEU LYS THR TRP ASN SER GLU LYS HIS PHE LEU SEQRES 31 B 431 GLU TYR LEU LEU GLU ASP GLU GLU VAL LYS LYS LEU VAL SEQRES 32 B 431 THR LYS GLU GLU LEU GLU GLU LEU PHE ASP ILE SER TYR SEQRES 33 B 431 TYR LEU LYS HIS VAL ASP HIS ILE PHE GLU ARG PHE GLU SEQRES 34 B 431 LYS GLU HET SO4 A 432 5 HET SO4 A 433 5 HET SO4 B 432 5 HET SO4 B 433 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *392(H2 O) HELIX 1 1 VAL A 2 SER A 6 5 5 HELIX 2 2 MET A 10 TRP A 14 5 5 HELIX 3 3 THR A 15 LEU A 37 1 23 HELIX 4 4 GLY A 43 ALA A 52 1 10 HELIX 5 5 ASP A 55 ASN A 67 1 13 HELIX 6 6 HIS A 68 GLY A 82 1 15 HELIX 7 7 GLU A 83 PHE A 88 5 6 HELIX 8 8 THR A 93 TYR A 131 1 39 HELIX 9 9 PHE A 150 SER A 176 1 27 HELIX 10 10 PRO A 191 LEU A 202 1 12 HELIX 11 11 ARG A 216 ARG A 245 1 30 HELIX 12 12 PRO A 271 TYR A 287 1 17 HELIX 13 13 TYR A 287 ASN A 294 1 8 HELIX 14 14 ILE A 303 MET A 334 1 32 HELIX 15 15 ASN A 337 ASP A 346 1 10 HELIX 16 16 GLY A 350 VAL A 352 5 3 HELIX 17 17 PHE A 353 LYS A 364 1 12 HELIX 18 18 THR A 367 ASN A 384 1 18 HELIX 19 19 HIS A 388 GLU A 395 1 8 HELIX 20 20 ASP A 396 LYS A 401 1 6 HELIX 21 21 THR A 404 GLU A 410 1 7 HELIX 22 22 LEU A 411 ASP A 413 5 3 HELIX 23 23 ILE A 414 LYS A 419 1 6 HELIX 24 24 HIS A 420 ARG A 427 1 8 HELIX 25 25 VAL B 2 SER B 6 5 5 HELIX 26 26 MET B 10 TRP B 14 5 5 HELIX 27 27 THR B 15 LEU B 37 1 23 HELIX 28 28 GLY B 43 ALA B 52 1 10 HELIX 29 29 ASP B 55 ASN B 67 1 13 HELIX 30 30 HIS B 68 GLY B 82 1 15 HELIX 31 31 GLU B 83 PHE B 88 5 6 HELIX 32 32 THR B 93 TYR B 131 1 39 HELIX 33 33 PHE B 150 SER B 176 1 27 HELIX 34 34 PRO B 191 LEU B 202 1 12 HELIX 35 35 ARG B 216 ARG B 245 1 30 HELIX 36 36 MET B 265 LYS B 269 5 5 HELIX 37 37 PRO B 271 TYR B 287 1 17 HELIX 38 38 TYR B 287 ASN B 294 1 8 HELIX 39 39 ILE B 303 MET B 334 1 32 HELIX 40 40 ASN B 337 ASP B 346 1 10 HELIX 41 41 GLY B 350 VAL B 352 5 3 HELIX 42 42 PHE B 353 LYS B 364 1 12 HELIX 43 43 THR B 367 ASN B 384 1 18 HELIX 44 44 HIS B 388 ASP B 396 1 9 HELIX 45 45 ASP B 396 LYS B 401 1 6 HELIX 46 46 THR B 404 LEU B 411 1 8 HELIX 47 47 PHE B 412 TYR B 417 5 6 HELIX 48 48 HIS B 420 ARG B 427 1 8 SHEET 1 A 2 PRO A 135 THR A 140 0 SHEET 2 A 2 VAL A 143 SER A 149 -1 O VAL A 143 N THR A 140 SHEET 1 B 2 TYR A 177 GLY A 178 0 SHEET 2 B 2 LYS A 205 PRO A 206 1 O LYS A 205 N GLY A 178 SHEET 1 C 2 VAL A 251 GLU A 252 0 SHEET 2 C 2 LYS A 335 VAL A 336 -1 N LYS A 335 O GLU A 252 SHEET 1 D 2 PRO B 135 THR B 140 0 SHEET 2 D 2 VAL B 143 SER B 149 -1 O VAL B 143 N THR B 140 SHEET 1 E 2 TYR B 177 GLY B 178 0 SHEET 2 E 2 LYS B 205 PRO B 206 1 O LYS B 205 N GLY B 178 SHEET 1 F 2 VAL B 251 GLU B 252 0 SHEET 2 F 2 LYS B 335 VAL B 336 -1 N LYS B 335 O GLU B 252 CISPEP 1 SER A 8 PRO A 9 0 -17.69 CISPEP 2 SER B 8 PRO B 9 0 -13.07 SITE 1 AC1 7 SER A 306 SER A 307 ARG A 310 HOH A1025 SITE 2 AC1 7 HOH A1148 ARG B 4 ARG B 276 SITE 1 AC2 3 THR A 93 SER A 94 HOH A1126 SITE 1 AC3 7 ARG A 4 ARG A 276 SER B 306 SER B 307 SITE 2 AC3 7 ARG B 310 HOH B2025 HOH B2148 SITE 1 AC4 3 THR B 93 SER B 94 HOH B2126 CRYST1 120.498 126.213 169.048 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005915 0.00000