PDB Short entry for 1C4B HEADER BETA-HAIRPIN 02-AUG-99 1C4B TITLE A BETA-HAIRPIN MIMIC FROM FCERI-ALPHA-CYCLO(RD-262) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CYCLO(RD-262)); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DISULFIDE BETWEEN CYS1 AND CYS13 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DERIVED FROM C-C' LOOP OF HUMAN FCERI-ALPHA KEYWDS BETA-HAIRPIN, PEPTIDE MIMIC, D-AMINO ACIDS, ALLERGY, FCERI, IGE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.M.MCDONNELL,D.FUSHMAN,S.M.CAHILL,B.J.SUTTON,D.COWBURN REVDAT 4 27-DEC-23 1C4B 1 REMARK REVDAT 3 16-FEB-22 1C4B 1 REMARK LINK REVDAT 2 24-FEB-09 1C4B 1 VERSN REVDAT 1 25-AUG-99 1C4B 0 SPRSDE 25-AUG-99 1C4B 2XBH JRNL AUTH J.M.MCDONNELL,D.FUSHMAN,S.M.CAHILL,B.J.SUTTON,D.COWBURN JRNL TITL SOLUTION STRUCTURES OF FCERI ALPHA-CHAIN MIMICS: A JRNL TITL 2 BETA-HAIRPIN PEPTIDE AND ITS RETROENANTIOMER JRNL REF J.AM.CHEM.SOC. V. 119 5321 1997 JRNL REFN ISSN 0002-7863 JRNL DOI 10.1021/JA963884O REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C4B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000001288. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; ROESY; TOCSY; DQF-COSY; REMARK 210 HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 DAL A 5 -178.35 -158.41 REMARK 500 1 DGL A 6 75.35 38.52 REMARK 500 1 DLY A 9 -91.60 -168.69 REMARK 500 1 DTY A 10 -134.76 -179.81 REMARK 500 1 DIL A 12 -106.44 161.48 REMARK 500 2 DAL A 5 176.45 -171.67 REMARK 500 2 DGL A 6 75.37 41.47 REMARK 500 2 DLY A 9 -89.12 -172.87 REMARK 500 2 DTY A 10 -133.54 178.78 REMARK 500 3 DTY A 2 -110.99 178.17 REMARK 500 3 DAL A 5 176.31 -161.17 REMARK 500 3 DGL A 6 75.40 41.06 REMARK 500 3 DLY A 9 -87.84 -170.38 REMARK 500 3 DTY A 10 -132.88 174.71 REMARK 500 3 DIL A 12 -161.02 -163.14 REMARK 500 4 DTY A 2 -134.20 179.93 REMARK 500 4 DAL A 5 173.95 -165.98 REMARK 500 4 DGL A 6 75.81 38.58 REMARK 500 4 DLY A 9 -89.43 -171.10 REMARK 500 4 DTY A 10 -134.38 178.07 REMARK 500 4 DIL A 12 -165.58 -88.64 REMARK 500 5 DTY A 2 -133.06 -171.45 REMARK 500 5 DAL A 5 171.44 -171.62 REMARK 500 5 DGL A 6 76.18 40.55 REMARK 500 5 DLY A 9 -89.31 -173.05 REMARK 500 5 DTY A 10 -130.98 179.04 REMARK 500 5 DIL A 12 -141.97 -165.76 REMARK 500 6 DTY A 2 -27.74 -172.75 REMARK 500 6 DAL A 5 169.64 -169.88 REMARK 500 6 DGL A 6 75.96 40.13 REMARK 500 6 DLY A 9 -88.89 -171.22 REMARK 500 6 DTY A 10 -132.72 176.42 REMARK 500 6 DIL A 12 -135.66 -67.26 REMARK 500 7 DAL A 5 173.12 -165.46 REMARK 500 7 DGL A 6 76.15 40.42 REMARK 500 7 DLY A 9 -88.74 -171.94 REMARK 500 7 DTY A 10 -132.90 178.58 REMARK 500 8 DTY A 2 -141.66 -178.43 REMARK 500 8 DAL A 5 169.96 -161.21 REMARK 500 8 DLY A 9 -81.51 -179.41 REMARK 500 8 DTY A 10 -132.96 -178.33 REMARK 500 9 DTY A 2 -131.84 176.90 REMARK 500 9 DAL A 5 175.76 -162.88 REMARK 500 9 DLY A 9 -84.56 -176.55 REMARK 500 9 DTY A 10 -131.91 -173.45 REMARK 500 10 DAL A 5 175.97 -171.50 REMARK 500 10 DGL A 6 75.38 38.51 REMARK 500 10 DLY A 9 -91.80 -172.02 REMARK 500 10 DTY A 10 -133.70 175.87 REMARK 500 10 DIL A 12 95.79 -179.08 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1C4B A 1 13 PDB 1C4B 1C4B 1 13 SEQRES 1 A 13 CYS DTY DLY DLE DAL DGL GLY DAS DLY DTY DTY DIL DCY MODRES 1C4B DTY A 2 TYR D-TYROSINE MODRES 1C4B DLY A 3 LYS D-LYSINE MODRES 1C4B DLE A 4 LEU D-LEUCINE MODRES 1C4B DAL A 5 ALA D-ALANINE MODRES 1C4B DGL A 6 GLU D-GLUTAMIC ACID MODRES 1C4B DAS A 8 ASP D-ASPARTIC ACID MODRES 1C4B DLY A 9 LYS D-LYSINE MODRES 1C4B DTY A 10 TYR D-TYROSINE MODRES 1C4B DTY A 11 TYR D-TYROSINE MODRES 1C4B DIL A 12 ILE D-ISOLEUCINE MODRES 1C4B DCY A 13 CYS D-CYSTEINE HET DTY A 2 21 HET DLY A 3 21 HET DLE A 4 19 HET DAL A 5 10 HET DGL A 6 16 HET DAS A 8 13 HET DLY A 9 21 HET DTY A 10 21 HET DTY A 11 21 HET DIL A 12 19 HET DCY A 13 11 HETNAM DTY D-TYROSINE HETNAM DLY D-LYSINE HETNAM DLE D-LEUCINE HETNAM DAL D-ALANINE HETNAM DGL D-GLUTAMIC ACID HETNAM DAS D-ASPARTIC ACID HETNAM DIL D-ISOLEUCINE HETNAM DCY D-CYSTEINE FORMUL 1 DTY 3(C9 H11 N O3) FORMUL 1 DLY 2(C6 H14 N2 O2) FORMUL 1 DLE C6 H13 N O2 FORMUL 1 DAL C3 H7 N O2 FORMUL 1 DGL C5 H9 N O4 FORMUL 1 DAS C4 H7 N O4 FORMUL 1 DIL C6 H13 N O2 FORMUL 1 DCY C3 H7 N O2 S SHEET 1 A 2 DTY A 2 DAL A 5 0 SHEET 2 A 2 DAS A 8 DTY A 11 -1 O DTY A 10 N DLY A 3 SSBOND 1 CYS A 1 DCY A 13 1555 1555 2.13 LINK C CYS A 1 N DTY A 2 1555 1555 1.33 LINK C DTY A 2 N DLY A 3 1555 1555 1.32 LINK C DLY A 3 N DLE A 4 1555 1555 1.33 LINK C DLE A 4 N DAL A 5 1555 1555 1.33 LINK C DAL A 5 N DGL A 6 1555 1555 1.33 LINK C DGL A 6 N GLY A 7 1555 1555 1.33 LINK C GLY A 7 N DAS A 8 1555 1555 1.33 LINK C DAS A 8 N DLY A 9 1555 1555 1.33 LINK C DLY A 9 N DTY A 10 1555 1555 1.33 LINK C DTY A 10 N DTY A 11 1555 1555 1.32 LINK C DTY A 11 N DIL A 12 1555 1555 1.33 LINK C DIL A 12 N DCY A 13 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000