PDB Short entry for 1C4T HEADER TRANSFERASE 22-SEP-99 1C4T TITLE CATALYTIC DOMAIN FROM TRIMERIC DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE); COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 172 - 404; COMPND 5 SYNONYM: E2O; COMPND 6 EC: 2.3.1.61; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 CELLULAR_LOCATION: MITOCHONDRIA; SOURCE 6 GENE: SUCB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS TRANSFERASE, ACYLTRANSFERASE, KETOGLUTARATE DEHYDROGENASE MULTIENZYME KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.E.KNAPP,D.CARROLL,J.E.LAWSON,S.R.ERNST,L.J.REED,M.L.HACKERT REVDAT 4 09-AUG-23 1C4T 1 REMARK REVDAT 3 13-JUL-11 1C4T 1 VERSN REVDAT 2 24-FEB-09 1C4T 1 VERSN REVDAT 1 18-FEB-00 1C4T 0 JRNL AUTH J.E.KNAPP,D.CARROLL,J.E.LAWSON,S.R.ERNST,L.J.REED, JRNL AUTH 2 M.L.HACKERT JRNL TITL EXPRESSION, PURIFICATION, AND STRUCTURAL ANALYSIS OF THE JRNL TITL 2 TRIMERIC FORM OF THE CATALYTIC DOMAIN OF THE ESCHERICHIA JRNL TITL 3 COLI DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE. JRNL REF PROTEIN SCI. V. 9 37 2000 JRNL REFN ISSN 0961-8368 JRNL PMID 10739245 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.KNAPP,D.T.MITCHELL,M.A.YAZDI,S.R.ERNST,L.J.REED, REMARK 1 AUTH 2 M.L.HACKERT REMARK 1 TITL CRYSTAL STRUCTURE OF THE TRUNCATED CUBIC CORE COMPONENT OF REMARK 1 TITL 2 THE ESCHERICHIA COLI 2-OXOGLUTARATE DEHYDROGENASE REMARK 1 TITL 3 MULTIENZYME COMPLEX REMARK 1 REF J.MOL.BIOL. V. 280 655 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.1924 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.E.SPENCER,M.G.DARLISON,P.E.STEPHENS,I.K.DUCKENFIELD, REMARK 1 AUTH 2 J.R.GUEST REMARK 1 TITL NUCLEOTIDE SEQUENCE OF THE SUCB GENE ENCODING THE REMARK 1 TITL 2 DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE OF ESCHERICHIA COLI K12 REMARK 1 TITL 3 AND HOMOLOGY WITH THE CORRESPONDING ACETYLTRANSFERASE REMARK 1 REF EUR.J.BIOCHEM. V. 141 361 1984 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 18669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2708 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 283 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.55 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.67 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 12.770; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 16.550; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.000 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : SO4.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : SO4.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1C4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000001306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : AUG-96 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MSC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 10.3000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 30.9000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1E2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.80567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.61133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.61133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.80567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 172 REMARK 465 THR A 181 REMARK 465 ARG A 182 REMARK 465 LEU A 183 REMARK 465 LEU A 402 REMARK 465 ASP A 403 REMARK 465 VAL A 404 REMARK 465 ALA B 172 REMARK 465 ARG B 173 REMARK 465 SER B 174 REMARK 465 VAL B 178 REMARK 465 PRO B 179 REMARK 465 MET B 180 REMARK 465 THR B 181 REMARK 465 ARG B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 256 REMARK 465 GLY B 257 REMARK 465 ASP B 258 REMARK 465 ASP B 259 REMARK 465 GLU B 313 REMARK 465 ASP B 403 REMARK 465 VAL B 404 REMARK 465 MET C 180 REMARK 465 THR C 181 REMARK 465 ARG C 182 REMARK 465 LEU C 183 REMARK 465 LYS C 217 REMARK 465 GLN C 218 REMARK 465 ASP C 258 REMARK 465 ASP C 259 REMARK 465 VAL C 404 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 SER A 174 OG REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 LYS A 176 CD CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 230 CD NE CZ NH1 NH2 REMARK 470 ASP A 259 CB CG OD1 OD2 REMARK 470 ASN A 264 CG OD1 ND2 REMARK 470 THR A 274 OG1 CG2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 338 CG OD1 ND2 REMARK 470 GLU A 392 CG CD OE1 OE2 REMARK 470 LYS B 176 CB CG CD CE NZ REMARK 470 ARG B 177 NE CZ NH1 NH2 REMARK 470 ARG B 186 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL B 187 CG1 CG2 REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 192 CG CD1 CD2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 LYS B 225 CD CE NZ REMARK 470 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 264 CG OD1 ND2 REMARK 470 SER B 273 CB OG REMARK 470 THR B 274 OG1 CG2 REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 ARG B 306 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 LEU B 310 CG CD1 CD2 REMARK 470 ARG C 186 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 221 CG CD OE1 OE2 REMARK 470 GLU C 224 CD OE1 OE2 REMARK 470 LYS C 225 CB CG CD CE NZ REMARK 470 ARG C 226 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS C 246 CE NZ REMARK 470 ASN C 264 CG OD1 ND2 REMARK 470 THR C 274 OG1 CG2 REMARK 470 ARG C 276 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 278 CB CG CD1 CD2 REMARK 470 LYS C 299 CD CE NZ REMARK 470 LYS C 304 CG CD CE NZ REMARK 470 ASP C 307 CG OD1 OD2 REMARK 470 LYS C 309 CG CD CE NZ REMARK 470 GLU C 313 CG CD OE1 OE2 REMARK 470 GLN C 360 CG CD OE1 NE2 REMARK 470 ASP C 379 CG OD1 OD2 REMARK 470 GLU C 382 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 257 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 397 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 GLY C 257 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 234 -39.60 -38.57 REMARK 500 ASP A 258 7.99 177.56 REMARK 500 THR A 280 66.21 -107.37 REMARK 500 LEU A 400 -68.96 -126.24 REMARK 500 LYS B 176 -83.62 -148.55 REMARK 500 MET B 234 -39.82 -38.63 REMARK 500 THR B 280 66.25 -107.76 REMARK 500 ASP B 396 76.37 -150.14 REMARK 500 THR B 398 10.55 -69.36 REMARK 500 MET C 234 -39.64 -38.51 REMARK 500 THR C 280 66.20 -107.77 REMARK 500 ASP C 396 70.73 -150.07 REMARK 500 THR C 398 36.75 -81.33 REMARK 500 ARG C 399 19.94 -156.72 REMARK 500 LEU C 400 -17.70 -143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1106 DBREF 1C4T A 172 404 UNP P07016 ODO2_ECOLI 173 405 DBREF 1C4T B 172 404 UNP P07016 ODO2_ECOLI 173 405 DBREF 1C4T C 172 404 UNP P07016 ODO2_ECOLI 173 405 SEQRES 1 A 233 ALA ARG SER GLU LYS ARG VAL PRO MET THR ARG LEU ARG SEQRES 2 A 233 LYS ARG VAL ALA GLU ARG LEU LEU GLU ALA LYS ASN SER SEQRES 3 A 233 THR ALA MET LEU THR THR PHE ASN GLU VAL ASN MET LYS SEQRES 4 A 233 PRO ILE MET ASP LEU ARG LYS GLN TYR GLY GLU ALA PHE SEQRES 5 A 233 GLU LYS ARG HIS GLY ILE ARG LEU GLY PHE MET SER PHE SEQRES 6 A 233 TYR VAL LYS ALA VAL VAL GLU ALA LEU LYS ARG TYR PRO SEQRES 7 A 233 GLU VAL ASN ALA SER ILE ASP GLY ASP ASP VAL VAL TYR SEQRES 8 A 233 HIS ASN TYR PHE ASP VAL SER MET ALA VAL SER THR PRO SEQRES 9 A 233 ARG GLY LEU VAL THR PRO VAL LEU ARG ASP VAL ASP THR SEQRES 10 A 233 LEU GLY MET ALA ASP ILE GLU LYS LYS ILE LYS GLU LEU SEQRES 11 A 233 ALA VAL LYS GLY ARG ASP GLY LYS LEU THR VAL GLU ASP SEQRES 12 A 233 LEU THR GLY GLY ASN PHE THR ILE THR ASN GLY GLY VAL SEQRES 13 A 233 PHE GLY SER LEU MET SER THR PRO ILE ILE ASN PRO PRO SEQRES 14 A 233 GLN SER ALA ILE LEU GLY MET HIS ALA ILE LYS ASP ARG SEQRES 15 A 233 PRO MET ALA VAL ASN GLY GLN VAL GLU ILE LEU PRO MET SEQRES 16 A 233 MET TYR LEU ALA LEU SER TYR ASP HIS ARG LEU ILE ASP SEQRES 17 A 233 GLY ARG GLU SER VAL GLY PHE LEU VAL THR ILE LYS GLU SEQRES 18 A 233 LEU LEU GLU ASP PRO THR ARG LEU LEU LEU ASP VAL SEQRES 1 B 233 ALA ARG SER GLU LYS ARG VAL PRO MET THR ARG LEU ARG SEQRES 2 B 233 LYS ARG VAL ALA GLU ARG LEU LEU GLU ALA LYS ASN SER SEQRES 3 B 233 THR ALA MET LEU THR THR PHE ASN GLU VAL ASN MET LYS SEQRES 4 B 233 PRO ILE MET ASP LEU ARG LYS GLN TYR GLY GLU ALA PHE SEQRES 5 B 233 GLU LYS ARG HIS GLY ILE ARG LEU GLY PHE MET SER PHE SEQRES 6 B 233 TYR VAL LYS ALA VAL VAL GLU ALA LEU LYS ARG TYR PRO SEQRES 7 B 233 GLU VAL ASN ALA SER ILE ASP GLY ASP ASP VAL VAL TYR SEQRES 8 B 233 HIS ASN TYR PHE ASP VAL SER MET ALA VAL SER THR PRO SEQRES 9 B 233 ARG GLY LEU VAL THR PRO VAL LEU ARG ASP VAL ASP THR SEQRES 10 B 233 LEU GLY MET ALA ASP ILE GLU LYS LYS ILE LYS GLU LEU SEQRES 11 B 233 ALA VAL LYS GLY ARG ASP GLY LYS LEU THR VAL GLU ASP SEQRES 12 B 233 LEU THR GLY GLY ASN PHE THR ILE THR ASN GLY GLY VAL SEQRES 13 B 233 PHE GLY SER LEU MET SER THR PRO ILE ILE ASN PRO PRO SEQRES 14 B 233 GLN SER ALA ILE LEU GLY MET HIS ALA ILE LYS ASP ARG SEQRES 15 B 233 PRO MET ALA VAL ASN GLY GLN VAL GLU ILE LEU PRO MET SEQRES 16 B 233 MET TYR LEU ALA LEU SER TYR ASP HIS ARG LEU ILE ASP SEQRES 17 B 233 GLY ARG GLU SER VAL GLY PHE LEU VAL THR ILE LYS GLU SEQRES 18 B 233 LEU LEU GLU ASP PRO THR ARG LEU LEU LEU ASP VAL SEQRES 1 C 233 ALA ARG SER GLU LYS ARG VAL PRO MET THR ARG LEU ARG SEQRES 2 C 233 LYS ARG VAL ALA GLU ARG LEU LEU GLU ALA LYS ASN SER SEQRES 3 C 233 THR ALA MET LEU THR THR PHE ASN GLU VAL ASN MET LYS SEQRES 4 C 233 PRO ILE MET ASP LEU ARG LYS GLN TYR GLY GLU ALA PHE SEQRES 5 C 233 GLU LYS ARG HIS GLY ILE ARG LEU GLY PHE MET SER PHE SEQRES 6 C 233 TYR VAL LYS ALA VAL VAL GLU ALA LEU LYS ARG TYR PRO SEQRES 7 C 233 GLU VAL ASN ALA SER ILE ASP GLY ASP ASP VAL VAL TYR SEQRES 8 C 233 HIS ASN TYR PHE ASP VAL SER MET ALA VAL SER THR PRO SEQRES 9 C 233 ARG GLY LEU VAL THR PRO VAL LEU ARG ASP VAL ASP THR SEQRES 10 C 233 LEU GLY MET ALA ASP ILE GLU LYS LYS ILE LYS GLU LEU SEQRES 11 C 233 ALA VAL LYS GLY ARG ASP GLY LYS LEU THR VAL GLU ASP SEQRES 12 C 233 LEU THR GLY GLY ASN PHE THR ILE THR ASN GLY GLY VAL SEQRES 13 C 233 PHE GLY SER LEU MET SER THR PRO ILE ILE ASN PRO PRO SEQRES 14 C 233 GLN SER ALA ILE LEU GLY MET HIS ALA ILE LYS ASP ARG SEQRES 15 C 233 PRO MET ALA VAL ASN GLY GLN VAL GLU ILE LEU PRO MET SEQRES 16 C 233 MET TYR LEU ALA LEU SER TYR ASP HIS ARG LEU ILE ASP SEQRES 17 C 233 GLY ARG GLU SER VAL GLY PHE LEU VAL THR ILE LYS GLU SEQRES 18 C 233 LEU LEU GLU ASP PRO THR ARG LEU LEU LEU ASP VAL HET SO4 A1101 5 HET SO4 A1104 5 HET SO4 B1102 5 HET SO4 B1105 5 HET SO4 C1103 5 HET SO4 C1106 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 HOH *28(H2 O) HELIX 1 1 ARG A 186 ASN A 196 1 11 HELIX 2 2 LYS A 210 HIS A 227 1 18 HELIX 3 3 MET A 234 ARG A 247 1 14 HELIX 4 4 PRO A 249 ASN A 252 1 4 HELIX 5 5 MET A 291 ARG A 306 1 16 HELIX 6 6 GLY A 326 PHE A 328 5 3 HELIX 7 7 GLY A 380 LEU A 394 1 15 HELIX 8 8 PRO A 397 ARG A 399 5 3 HELIX 9 9 LYS B 185 ASN B 196 1 12 HELIX 10 10 LYS B 210 HIS B 227 1 18 HELIX 11 11 MET B 234 ARG B 247 1 14 HELIX 12 12 PRO B 249 ASN B 252 1 4 HELIX 13 13 MET B 291 ARG B 306 1 16 HELIX 14 14 GLY B 326 PHE B 328 5 3 HELIX 15 15 GLY B 380 LEU B 394 1 15 HELIX 16 16 PRO B 397 LEU B 400 1 4 HELIX 17 17 LYS C 185 ASN C 196 1 12 HELIX 18 18 LYS C 210 LEU C 215 1 6 HELIX 19 19 GLY C 220 HIS C 227 1 8 HELIX 20 20 MET C 234 ARG C 247 1 14 HELIX 21 21 PRO C 249 ASN C 252 1 4 HELIX 22 22 MET C 291 ARG C 306 1 16 HELIX 23 23 GLY C 326 PHE C 328 5 3 HELIX 24 24 GLY C 380 ASP C 396 1 17 SHEET 1 A 6 MET A 200 ASN A 208 0 SHEET 2 A 6 MET A 366 ASP A 374 -1 N TYR A 373 O LEU A 201 SHEET 3 A 6 ALA A 343 MET A 347 -1 N GLY A 346 O ALA A 370 SHEET 4 A 6 PHE A 320 ASN A 324 1 N THR A 323 O LEU A 345 SHEET 5 A 6 VAL A 268 THR A 274 1 N SER A 269 O PHE A 320 SHEET 6 A 6 GLY A 277 LEU A 283 -1 N LEU A 283 O VAL A 268 SHEET 1 B 2 SER A 254 ASP A 256 0 SHEET 2 B 2 ASP A 259 VAL A 261 -1 N VAL A 261 O SER A 254 SHEET 1 C 2 ILE A 350 VAL A 357 0 SHEET 2 C 2 GLN A 360 MET A 367 -1 N MET A 366 O LYS A 351 SHEET 1 D 6 MET B 200 ASN B 208 0 SHEET 2 D 6 MET B 366 ASP B 374 -1 N TYR B 373 O LEU B 201 SHEET 3 D 6 ALA B 343 MET B 347 -1 N GLY B 346 O ALA B 370 SHEET 4 D 6 PHE B 320 ASN B 324 1 N THR B 323 O LEU B 345 SHEET 5 D 6 VAL B 268 THR B 274 1 N SER B 269 O PHE B 320 SHEET 6 D 6 GLY B 277 LEU B 283 -1 N LEU B 283 O VAL B 268 SHEET 1 E 2 ILE B 350 VAL B 357 0 SHEET 2 E 2 GLN B 360 MET B 367 -1 N MET B 366 O LYS B 351 SHEET 1 F 6 MET C 200 ASN C 208 0 SHEET 2 F 6 MET C 366 ASP C 374 -1 N TYR C 373 O LEU C 201 SHEET 3 F 6 ALA C 343 MET C 347 -1 N GLY C 346 O ALA C 370 SHEET 4 F 6 PHE C 320 ASN C 324 1 N THR C 323 O LEU C 345 SHEET 5 F 6 VAL C 268 THR C 274 1 N SER C 269 O PHE C 320 SHEET 6 F 6 GLY C 277 LEU C 283 -1 N LEU C 283 O VAL C 268 SHEET 1 G 2 ILE C 350 VAL C 357 0 SHEET 2 G 2 GLN C 360 MET C 367 -1 N MET C 366 O LYS C 351 CISPEP 1 PRO A 339 PRO A 340 0 -0.23 CISPEP 2 PRO B 339 PRO B 340 0 -0.19 CISPEP 3 PRO C 339 PRO C 340 0 0.18 SITE 1 AC1 4 HIS A 375 GLY A 380 HOH A1019 HOH A1021 SITE 1 AC2 5 LEU A 278 HIS B 375 GLY B 380 HOH B1017 SITE 2 AC2 5 HOH B1028 SITE 1 AC3 3 LEU B 278 HIS C 375 HOH C1024 SITE 1 AC4 4 GLU A 250 LEU A 377 ASP A 379 GLU A 382 SITE 1 AC5 4 GLU B 250 LEU B 377 ASP B 379 GLU B 382 SITE 1 AC6 3 GLU C 250 LEU C 377 ASP C 379 CRYST1 112.175 112.175 134.417 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008915 0.005147 0.000000 0.00000 SCALE2 0.000000 0.010294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007439 0.00000 MTRIX1 1 0.674415 0.682089 0.282700 -56.81200 1 MTRIX2 1 0.040970 -0.416860 0.908047 190.42900 1 MTRIX3 1 0.737215 -0.600818 -0.309082 -1.07100 1 MTRIX1 2 0.695220 0.015427 0.718632 -88.18900 1 MTRIX2 2 0.670704 -0.373478 -0.640836 76.58700 1 MTRIX3 2 0.258507 0.927511 -0.269996 157.25700 1