PDB Short entry for 1CB8 HEADER LYASE 02-MAR-99 1CB8 TITLE CHONDROITINASE AC LYASE FROM FLAVOBACTERIUM HEPARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CHONDROITINASE AC); COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEDOBACTER HEPARINUS; SOURCE 3 ORGANISM_TAXID: 984; SOURCE 4 CELLULAR_LOCATION: INTRACELLULAR KEYWDS LYASE, CHONDROITIN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR J.FETHIERE,B.EGGIMANN,M.CYGLER REVDAT 6 27-DEC-23 1CB8 1 REMARK HETSYN LINK REVDAT 5 29-JUL-20 1CB8 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 06-NOV-19 1CB8 1 JRNL REMARK LINK REVDAT 3 13-JUL-11 1CB8 1 VERSN REVDAT 2 24-FEB-09 1CB8 1 VERSN REVDAT 1 14-MAY-99 1CB8 0 JRNL AUTH J.FETHIERE,B.EGGIMANN,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF CHONDROITIN AC LYASE, A REPRESENTATIVE JRNL TITL 2 OF A FAMILY OF GLYCOSAMINOGLYCAN DEGRADING ENZYMES. JRNL REF J.MOL.BIOL. V. 288 635 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10329169 JRNL DOI 10.1006/JMBI.1999.2698 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.FETHIERE,B.H.SHILTON,Y.LI,M.ALLAIRE,M.LALIBERTE, REMARK 1 AUTH 2 B.EGGIMANN,M.CYGLER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY ANALYSIS OF CHONDROITINASE REMARK 1 TITL 2 AC FROM FLAVOBACTERIUM HEPARINUM. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 279 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 9761894 REMARK 1 DOI 10.1107/S0907444997009037 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 52960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5337 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6348 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 755 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.990 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.990 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : MAN.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 2 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : MAN.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY REMARK 4 REMARK 4 1CB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60889 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21200 REMARK 200 R SYM FOR SHELL (I) : 0.21200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE, PHASES V. 95 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: MIRAS COMPLEMENTED BY MAD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: PEG-MME 2K REMARK 280 17% AMMONIUM ACETATE 80MM PH 6.5 0.4M SODIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.65000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.60000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.97500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.60000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.32500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 144.97500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.32500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 GLN A 24 REMARK 465 THR A 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ALA A 154 CB REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 THR A 500 CB OG1 CG2 REMARK 470 ALA A 501 CB REMARK 470 LYS A 503 CB CG CD CE NZ REMARK 470 LYS A 508 CG CD CE NZ REMARK 470 LYS A 594 CB CG CD CE NZ REMARK 470 ASN A 596 CB CG OD1 ND2 REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 LYS A 700 CA C O CB CG CD CE REMARK 470 LYS A 700 NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 29 CB CG CD OE1 OE2 REMARK 480 LEU A 43 CB CG CD1 CD2 REMARK 480 LYS A 48 CD CE NZ REMARK 480 ALA A 50 CB REMARK 480 LYS A 52 CG CD CE NZ REMARK 480 LEU A 57 CB CG CD1 CD2 REMARK 480 LYS A 69 CB CG CD CE NZ REMARK 480 LYS A 95 CD CE NZ REMARK 480 ARG A 124 NE CZ NH1 NH2 REMARK 480 LEU A 155 CD1 CD2 REMARK 480 LYS A 170 CE NZ REMARK 480 ALA A 194 CB REMARK 480 LYS A 201 CB CG CD CE NZ REMARK 480 THR A 258 CB OG1 CG2 REMARK 480 LYS A 365 CE NZ REMARK 480 LYS A 375 CG CD CE NZ REMARK 480 LYS A 425 CG CD CE NZ REMARK 480 LYS A 467 CG CD CE NZ REMARK 480 THR A 504 OG1 CG2 REMARK 480 ILE A 509 CG1 CG2 CD1 REMARK 480 LYS A 513 CD CE NZ REMARK 480 ASN A 534 CG OD1 ND2 REMARK 480 LYS A 555 CG CD CE NZ REMARK 480 SER A 559 CB OG REMARK 480 LYS A 588 CG CD CE NZ REMARK 480 GLN A 615 CB CG CD OE1 NE2 REMARK 480 LYS A 629 CG CD CE NZ REMARK 480 SER A 631 OG REMARK 480 LYS A 666 CE NZ REMARK 480 ASN A 681 CG OD1 ND2 REMARK 480 LYS A 684 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 455 C1 MAN B 1 1.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 65.19 32.23 REMARK 500 ILE A 131 -65.65 -124.25 REMARK 500 TYR A 212 -6.86 56.92 REMARK 500 HIS A 225 66.13 80.62 REMARK 500 SER A 232 -137.58 -97.50 REMARK 500 SER A 233 -122.93 47.75 REMARK 500 LYS A 335 18.98 55.12 REMARK 500 VAL A 443 -37.27 -134.91 REMARK 500 PHE A 465 -154.17 -120.03 REMARK 500 ALA A 501 72.79 70.48 REMARK 500 ASN A 550 105.63 -160.11 REMARK 500 ASN A 605 75.95 -154.21 REMARK 500 ASN A 651 41.15 -105.92 REMARK 500 GLN A 690 -121.64 56.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN B 1 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MFU B 4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3000 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 405 OE2 REMARK 620 2 ASP A 407 OD1 77.3 REMARK 620 3 ASP A 407 OD2 128.2 51.0 REMARK 620 4 ASP A 416 OD1 90.4 101.5 101.1 REMARK 620 5 TYR A 417 O 146.6 135.9 85.2 79.9 REMARK 620 6 HOH A3200 O 92.2 86.1 82.9 172.3 94.0 REMARK 620 7 HOH A3202 O 71.1 142.7 152.3 98.0 78.7 76.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAL REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITE IN THE BETA-SHEET DOMAIN REMARK 800 REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: HYPOTHETICAL ACTIVE SITE WITH THE HIS SERVING AS REMARK 800 THE CATALYTIC BASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 PDB SEGMENT NUMBERED ACCORDING TO PRECURSOR SEQUENCE. REMARK 999 THE FIRST THREE N-TERMINAL RESIDUES, AND THE REMARK 999 C-TERMINAL RESIDUE WERE NOT VISIBLE IN REMARK 999 ELECTRON DENSITY MAPS, AND THEREFORE WERE REMARK 999 NOT INCLUDED IN THE MODEL. DBREF 1CB8 A 23 700 UNP Q59288 CHAC_SPHHE 23 700 SEQRES 1 A 678 GLN GLN THR GLY THR ALA GLU LEU ILE MET LYS ARG VAL SEQRES 2 A 678 MET LEU ASP LEU LYS LYS PRO LEU ARG ASN MET ASP LYS SEQRES 3 A 678 VAL ALA GLU LYS ASN LEU ASN THR LEU GLN PRO ASP GLY SEQRES 4 A 678 SER TRP LYS ASP VAL PRO TYR LYS ASP ASP ALA MET THR SEQRES 5 A 678 ASN TRP LEU PRO ASN ASN HIS LEU LEU GLN LEU GLU THR SEQRES 6 A 678 ILE ILE GLN ALA TYR ILE GLU LYS ASP SER HIS TYR TYR SEQRES 7 A 678 GLY ASP ASP LYS VAL PHE ASP GLN ILE SER LYS ALA PHE SEQRES 8 A 678 LYS TYR TRP TYR ASP SER ASP PRO LYS SER ARG ASN TRP SEQRES 9 A 678 TRP HIS ASN GLU ILE ALA THR PRO GLN ALA LEU GLY GLU SEQRES 10 A 678 MET LEU ILE LEU MET ARG TYR GLY LYS LYS PRO LEU ASP SEQRES 11 A 678 GLU ALA LEU VAL HIS LYS LEU THR GLU ARG MET LYS ARG SEQRES 12 A 678 GLY GLU PRO GLU LYS LYS THR GLY ALA ASN LYS THR ASP SEQRES 13 A 678 ILE ALA LEU HIS TYR PHE TYR ARG ALA LEU LEU THR SER SEQRES 14 A 678 ASP GLU ALA LEU LEU SER PHE ALA VAL LYS GLU LEU PHE SEQRES 15 A 678 TYR PRO VAL GLN PHE VAL HIS TYR GLU GLU GLY LEU GLN SEQRES 16 A 678 TYR ASP TYR SER TYR LEU GLN HIS GLY PRO GLN LEU GLN SEQRES 17 A 678 ILE SER SER TYR GLY ALA VAL PHE ILE THR GLY VAL LEU SEQRES 18 A 678 LYS LEU ALA ASN TYR VAL ARG ASP THR PRO TYR ALA LEU SEQRES 19 A 678 SER THR GLU LYS LEU ALA ILE PHE SER LYS TYR TYR ARG SEQRES 20 A 678 ASP SER TYR LEU LYS ALA ILE ARG GLY SER TYR MET ASP SEQRES 21 A 678 PHE ASN VAL GLU GLY ARG GLY VAL SER ARG PRO ASP ILE SEQRES 22 A 678 LEU ASN LYS LYS ALA GLU LYS LYS ARG LEU LEU VAL ALA SEQRES 23 A 678 LYS MET ILE ASP LEU LYS HIS THR GLU GLU TRP ALA ASP SEQRES 24 A 678 ALA ILE ALA ARG THR ASP SER THR VAL ALA ALA GLY TYR SEQRES 25 A 678 LYS ILE GLU PRO TYR HIS HIS GLN PHE TRP ASN GLY ASP SEQRES 26 A 678 TYR VAL GLN HIS LEU ARG PRO ALA TYR SER PHE ASN VAL SEQRES 27 A 678 ARG MET VAL SER LYS ARG THR ARG ARG SER GLU SER GLY SEQRES 28 A 678 ASN LYS GLU ASN LEU LEU GLY ARG TYR LEU SER ASP GLY SEQRES 29 A 678 ALA THR ASN ILE GLN LEU ARG GLY PRO GLU TYR TYR ASN SEQRES 30 A 678 ILE MET PRO VAL TRP GLU TRP ASP LYS ILE PRO GLY ILE SEQRES 31 A 678 THR SER ARG ASP TYR LEU THR ASP ARG PRO LEU THR LYS SEQRES 32 A 678 LEU TRP GLY GLU GLN GLY SER ASN ASP PHE ALA GLY GLY SEQRES 33 A 678 VAL SER ASP GLY VAL TYR GLY ALA SER ALA TYR ALA LEU SEQRES 34 A 678 ASP TYR ASP SER LEU GLN ALA LYS LYS ALA TRP PHE PHE SEQRES 35 A 678 PHE ASP LYS GLU ILE VAL CYS LEU GLY ALA GLY ILE ASN SEQRES 36 A 678 SER ASN ALA PRO GLU ASN ILE THR THR THR LEU ASN GLN SEQRES 37 A 678 SER TRP LEU ASN GLY PRO VAL ILE SER THR ALA GLY LYS SEQRES 38 A 678 THR GLY ARG GLY LYS ILE THR THR PHE LYS ALA GLN GLY SEQRES 39 A 678 GLN PHE TRP LEU LEU HIS ASP ALA ILE GLY TYR TYR PHE SEQRES 40 A 678 PRO GLU GLY ALA ASN LEU SER LEU SER THR GLN SER GLN SEQRES 41 A 678 LYS GLY ASN TRP PHE HIS ILE ASN ASN SER HIS SER LYS SEQRES 42 A 678 ASP GLU VAL SER GLY ASP VAL PHE LYS LEU TRP ILE ASN SEQRES 43 A 678 HIS GLY ALA ARG PRO GLU ASN ALA GLN TYR ALA TYR ILE SEQRES 44 A 678 VAL LEU PRO GLY ILE ASN LYS PRO GLU GLU ILE LYS LYS SEQRES 45 A 678 TYR ASN GLY THR ALA PRO LYS VAL LEU ALA ASN THR ASN SEQRES 46 A 678 GLN LEU GLN ALA VAL TYR HIS GLN GLN LEU ASP MET VAL SEQRES 47 A 678 GLN ALA ILE PHE TYR THR ALA GLY LYS LEU SER VAL ALA SEQRES 48 A 678 GLY ILE GLU ILE GLU THR ASP LYS PRO CYS ALA VAL LEU SEQRES 49 A 678 ILE LYS HIS ILE ASN GLY LYS GLN VAL ILE TRP ALA ALA SEQRES 50 A 678 ASP PRO LEU GLN LYS GLU LYS THR ALA VAL LEU SER ILE SEQRES 51 A 678 ARG ASP LEU LYS THR GLY LYS THR ASN ARG VAL LYS ILE SEQRES 52 A 678 ASP PHE PRO GLN GLN GLU PHE ALA GLY ALA THR VAL GLU SEQRES 53 A 678 LEU LYS HET MAN B 1 11 HET GCU B 2 12 HET XYP B 3 9 HET MFU B 4 11 HET RAM B 5 10 HET CA A3000 1 HET GOL A2010 6 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GCU ALPHA-D-GLUCOPYRANURONIC ACID HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MFU METHYL ALPHA-L-FUCOPYRANOSIDE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GCU ALPHA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 GCU ACID HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN MFU ALPHA-L-METHYL-FUCOSE; METHYL 6-DEOXY-ALPHA-L- HETSYN 2 MFU GALACTOPYRANOSIDE; METHYL ALPHA-L-FUCOSIDE; METHYL L- HETSYN 3 MFU FUCOSIDE; METHYL FUCOSIDE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MAN C6 H12 O6 FORMUL 2 GCU C6 H10 O7 FORMUL 2 XYP C5 H10 O5 FORMUL 2 MFU C7 H14 O5 FORMUL 2 RAM C6 H12 O5 FORMUL 3 CA CA 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *526(H2 O) HELIX 1 1 THR A 27 LEU A 39 1 13 HELIX 2 2 MET A 46 THR A 56 1 11 HELIX 3 3 LEU A 77 ILE A 93 5 17 HELIX 4 4 ASP A 103 SER A 119 1 17 HELIX 5 5 TRP A 126 GLU A 130 1 5 HELIX 6 6 ALA A 132 TYR A 146 1 15 HELIX 7 7 GLU A 153 MET A 163 1 11 HELIX 8 8 PRO A 168 LYS A 170 5 3 HELIX 9 9 GLY A 173 LEU A 189 1 17 HELIX 10 10 GLU A 193 PRO A 206 1 14 HELIX 11 11 SER A 233 VAL A 249 5 17 HELIX 12 12 THR A 258 ASP A 270 1 13 HELIX 13 13 LEU A 273 ALA A 275 5 3 HELIX 14 14 PHE A 283 VAL A 285 5 3 HELIX 15 15 GLY A 287 SER A 291 5 5 HELIX 16 16 LYS A 299 ILE A 311 5 13 HELIX 17 17 LEU A 313 THR A 326 5 14 HELIX 18 18 PRO A 395 TYR A 397 5 3 HELIX 19 19 MET A 401 VAL A 403 5 3 HELIX 20 20 PRO A 589 LYS A 593 5 5 HELIX 21 21 ASN A 596 THR A 598 5 3 HELIX 22 22 GLN A 690 PHE A 692 5 3 SHEET 1 A 2 TYR A 339 PHE A 343 0 SHEET 2 A 2 TYR A 348 LEU A 352 -1 N LEU A 352 O TYR A 339 SHEET 1 B 2 SER A 357 ARG A 361 0 SHEET 2 B 2 ALA A 387 GLN A 391 -1 N GLN A 391 O SER A 357 SHEET 1 C 5 THR A 413 ARG A 415 0 SHEET 2 C 5 ASN A 483 THR A 487 -1 N THR A 485 O SER A 414 SHEET 3 C 5 LYS A 564 ALA A 571 -1 N GLY A 570 O ILE A 484 SHEET 4 C 5 ALA A 533 SER A 538 -1 N SER A 538 O LYS A 564 SHEET 5 C 5 ILE A 509 ALA A 514 -1 N ALA A 514 O ALA A 533 SHEET 1 D 7 ALA A 436 SER A 440 0 SHEET 2 D 7 GLY A 445 TYR A 453 -1 N ALA A 448 O GLY A 437 SHEET 3 D 7 LEU A 456 PHE A 464 -1 N PHE A 464 O GLY A 445 SHEET 4 D 7 ILE A 469 ALA A 474 -1 N ALA A 474 O LYS A 459 SHEET 5 D 7 TYR A 578 PRO A 584 -1 N VAL A 582 O ILE A 469 SHEET 6 D 7 ILE A 525 PHE A 529 -1 N TYR A 528 O ILE A 581 SHEET 7 D 7 PHE A 518 HIS A 522 -1 N HIS A 522 O ILE A 525 SHEET 1 E 2 ASN A 489 TRP A 492 0 SHEET 2 E 2 VAL A 562 LEU A 565 -1 N LEU A 565 O ASN A 489 SHEET 1 F 2 VAL A 497 SER A 499 0 SHEET 2 F 2 GLY A 502 THR A 504 -1 N THR A 504 O VAL A 497 SHEET 1 G 2 SER A 541 ASN A 545 0 SHEET 2 G 2 GLU A 557 ASP A 561 -1 N GLY A 560 O GLN A 542 SHEET 1 H 5 VAL A 655 ALA A 659 0 SHEET 2 H 5 CYS A 643 LYS A 648 -1 N LYS A 648 O VAL A 655 SHEET 3 H 5 MET A 619 PHE A 624 -1 N PHE A 624 O CYS A 643 SHEET 4 H 5 LEU A 609 HIS A 614 -1 N HIS A 614 O MET A 619 SHEET 5 H 5 LYS A 601 ASN A 605 -1 N ALA A 604 O ALA A 611 SHEET 1 I 4 GLY A 628 VAL A 632 0 SHEET 2 I 4 ILE A 635 THR A 639 -1 N THR A 639 O GLY A 628 SHEET 3 I 4 THR A 667 ASP A 674 -1 N ARG A 673 O GLU A 636 SHEET 4 I 4 THR A 680 ASP A 686 -1 N ILE A 685 O ALA A 668 LINK O2 MAN B 1 C1 GCU B 2 1555 1555 1.42 LINK O4 MAN B 1 C1 RAM B 5 1555 1555 1.44 LINK O4 GCU B 2 C1 XYP B 3 1555 1555 1.43 LINK O4 XYP B 3 C1 MFU B 4 1555 1555 1.46 LINK OE2 GLU A 405 CA CA A3000 1555 1555 2.48 LINK OD1 ASP A 407 CA CA A3000 1555 1555 2.56 LINK OD2 ASP A 407 CA CA A3000 1555 1555 2.52 LINK OD1 ASP A 416 CA CA A3000 1555 1555 2.66 LINK O TYR A 417 CA CA A3000 1555 1555 2.27 LINK CA CA A3000 O HOH A3200 1555 1555 2.33 LINK CA CA A3000 O HOH A3202 1555 1555 2.41 SITE 1 CAL 6 GLU A 405 ASP A 407 TYR A 417 ASP A 416 SITE 2 CAL 6 HOH A3312 HOH A3313 SITE 1 ACT 3 HIS A 225 ARG A 288 ARG A 292 CRYST1 87.200 87.200 193.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005173 0.00000