PDB Short entry for 1CGU HEADER GLYCOSYLTRANSFERASE 10-JUN-92 1CGU TITLE CATALYTIC CENTER OF CYCLODEXTRIN GLYCOSYLTRANSFERASE DERIVED FROM X- TITLE 2 RAY STRUCTURE ANALYSIS COMBINED WITH SITE-DIRECTED MUTAGENESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLODEXTRIN GLYCOSYL-TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.19; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 3 ORGANISM_TAXID: 1397 KEYWDS GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KLEIN,J.HOLLENDER,H.BENDER,G.E.SCHULZ REVDAT 3 29-JUL-20 1CGU 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 24-FEB-09 1CGU 1 VERSN REVDAT 1 31-JAN-94 1CGU 0 JRNL AUTH C.KLEIN,J.HOLLENDER,H.BENDER,G.E.SCHULZ JRNL TITL CATALYTIC CENTER OF CYCLODEXTRIN GLYCOSYLTRANSFERASE DERIVED JRNL TITL 2 FROM X-RAY STRUCTURE ANALYSIS COMBINED WITH SITE-DIRECTED JRNL TITL 3 MUTAGENESIS. JRNL REF BIOCHEMISTRY V. 31 8740 1992 JRNL REFN ISSN 0006-2960 JRNL PMID 1390660 JRNL DOI 10.1021/BI00152A009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.KLEIN,G.E.SCHULZ REMARK 1 TITL STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE REFINED AT 2.0 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 217 737 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.KLEIN,W.VOGEL,H.BENDER,G.E.SCHULZ REMARK 1 TITL ENGINEERING A HEAVY ATOM DERIVATIVE FOR THE X-RAY STRUCTURE REMARK 1 TITL 2 ANALYSIS OF CYCLODEXTRIN GLYCOSYLTRANSFERASE REMARK 1 REF PROTEIN ENG. V. 4 65 1990 REMARK 1 REFN ISSN 0269-2139 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.NITSCHKE,K.HEEGER,H.BENDER,G.E.SCHULZ REMARK 1 TITL MOLECULAR CLONING, NUCLEOTIDE SEQUENCE AND EXPRESSION IN REMARK 1 TITL 2 ESCHERICHIA COLI OF THE BETA-CYCLODEXTRIN REMARK 1 TITL 3 GLYCOSYLTRANSFERASE GENE FROM BACILLUS CIRCULANS STRAIN NO. REMARK 1 TITL 4 8 REMARK 1 REF APPL.MICROBIOL.BIOTECHNOL. V. 33 542 1990 REMARK 1 REFN ISSN 0175-7598 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.E.HOFMANN,H.BENDER,G.E.SCHULZ REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF CYCLODEXTRIN REMARK 1 TITL 2 GLYCOSYLTRANSFERASE FROM BACILLUS CIRCULANS AT 3.4 ANGSTROMS REMARK 1 TITL 3 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 209 793 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1160 O HOH A 1235 3645 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 98 NE2 HIS A 98 CD2 -0.070 REMARK 500 HIS A 126 NE2 HIS A 126 CD2 -0.070 REMARK 500 HIS A 140 NE2 HIS A 140 CD2 -0.069 REMARK 500 HIS A 177 NE2 HIS A 177 CD2 -0.079 REMARK 500 HIS A 233 NE2 HIS A 233 CD2 -0.073 REMARK 500 HIS A 249 NE2 HIS A 249 CD2 -0.068 REMARK 500 HIS A 502 NE2 HIS A 502 CD2 -0.096 REMARK 500 HIS A 630 NE2 HIS A 630 CD2 -0.068 REMARK 500 HIS A 667 NE2 HIS A 667 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP A 54 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 54 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 54 CG - CD2 - CE3 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 75 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 75 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 THR A 86 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 TRP A 101 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP A 101 CE2 - CD2 - CG ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP A 101 CG - CD2 - CE3 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 104 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 191 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 195 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TRP A 218 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 218 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 238 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 238 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 242 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 242 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 242 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 SER A 245 CA - CB - OG ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU A 257 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 TRP A 258 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 258 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 MET A 278 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 280 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 284 CB - CG - CD ANGL. DEV. = -29.9 DEGREES REMARK 500 ARG A 294 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 313 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 LEU A 342 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 ARG A 353 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 353 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 PRO A 356 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 TYR A 359 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 365 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 THR A 367 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 398 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 398 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 412 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 413 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 413 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 417 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 THR A 472 CA - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 THR A 486 CA - C - N ANGL. DEV. = -16.4 DEGREES REMARK 500 THR A 493 CA - CB - CG2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 519 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TRP A 543 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 99.41 -66.18 REMARK 500 PHE A 25 -73.66 -92.97 REMARK 500 ASN A 32 42.86 -91.55 REMARK 500 ALA A 37 -57.30 -28.28 REMARK 500 SER A 90 68.84 36.18 REMARK 500 ALA A 96 35.93 -89.47 REMARK 500 ARG A 103 -6.46 -146.20 REMARK 500 ASP A 104 105.42 -163.98 REMARK 500 ALA A 137 67.53 -112.84 REMARK 500 PRO A 138 10.87 -65.20 REMARK 500 THR A 141 -89.61 -95.15 REMARK 500 ALA A 152 -134.91 42.30 REMARK 500 ASN A 160 34.58 38.52 REMARK 500 ASP A 170 72.90 -101.25 REMARK 500 HIS A 177 60.35 -115.95 REMARK 500 TYR A 195 -103.13 54.57 REMARK 500 HIS A 249 -58.66 -121.92 REMARK 500 PRO A 251 105.88 -55.16 REMARK 500 MET A 300 -30.93 -36.18 REMARK 500 PHE A 323 147.35 -172.94 REMARK 500 ASP A 325 -178.87 -176.50 REMARK 500 TYR A 365 45.60 30.93 REMARK 500 ARG A 375 57.39 -101.27 REMARK 500 PHE A 381 54.93 -112.11 REMARK 500 TYR A 406 -9.73 -142.94 REMARK 500 SER A 439 -31.54 -141.93 REMARK 500 ASN A 478 136.25 -39.61 REMARK 500 THR A 496 42.01 -147.59 REMARK 500 PRO A 510 142.85 -39.03 REMARK 500 LYS A 525 106.33 -31.70 REMARK 500 ALA A 594 72.91 -114.67 REMARK 500 THR A 596 -163.50 -127.14 REMARK 500 ASN A 607 4.38 -56.69 REMARK 500 ASN A 613 73.97 54.07 REMARK 500 TRP A 614 48.52 38.92 REMARK 500 ASN A 626 22.66 -179.91 REMARK 500 VAL A 628 -77.86 -92.41 REMARK 500 TYR A 632 127.63 -38.99 REMARK 500 ASN A 655 -80.24 -122.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 360 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLC B 1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 686 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD1 REMARK 620 2 ASN A 29 O 64.1 REMARK 620 3 ASN A 32 OD1 126.9 63.3 REMARK 620 4 ASN A 33 OD1 76.0 95.0 101.0 REMARK 620 5 GLY A 51 O 73.7 133.9 157.7 92.1 REMARK 620 6 ASP A 53 OD1 82.7 76.5 92.6 158.6 80.7 REMARK 620 7 HOH A 830 O 143.2 152.5 89.8 96.1 70.7 100.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 685 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 139 OD1 REMARK 620 2 ILE A 190 O 164.0 REMARK 620 3 ASP A 199 OD2 114.4 81.0 REMARK 620 4 ASP A 199 OD1 86.7 108.1 47.0 REMARK 620 5 HIS A 233 O 83.3 80.8 159.8 149.5 REMARK 620 6 HOH A 738 O 107.3 71.7 102.2 75.4 80.3 REMARK 620 7 HOH A 745 O 112.0 60.4 93.6 140.4 69.7 126.1 REMARK 620 8 HOH A 764 O 68.0 117.3 67.7 88.6 113.8 163.7 68.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 650 REMARK 650 HELIX REMARK 650 HELIX STRAND H1 IS A NONHELICAL SEGMENT BETWEEN ASP 63 AND REMARK 650 ASN 64. REMARK 700 REMARK 700 SHEET REMARK 700 THIS MOLECULE CONTAINS ONE BIFURCATED SHEET. IN ORDER TO REMARK 700 REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, THE TWO REMARK 700 SHEETS, S11 AND S12, ARE DEFINED HAVING STRANDS 1, 2, 3, REMARK 700 IN COMMON. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE BELOW IS THAT DETERMINED BY THE AUTHORS, SEE REMARK 999 REFERENCE 3 ABOVE. DBREF 1CGU A 1 684 UNP P30920 CDGT_BACCI 35 718 SEQADV 1CGU ALA A 229 UNP P30920 ASP 263 CONFLICT SEQRES 1 A 684 ASP PRO ASP THR ALA VAL THR ASN LYS GLN SER PHE SER SEQRES 2 A 684 THR ASP VAL ILE TYR GLN VAL PHE THR ASP ARG PHE LEU SEQRES 3 A 684 ASP GLY ASN PRO SER ASN ASN PRO THR GLY ALA ALA TYR SEQRES 4 A 684 ASP ALA THR CYS SER ASN LEU LYS LEU TYR CYS GLY GLY SEQRES 5 A 684 ASP TRP GLN GLY LEU ILE ASN LYS ILE ASN ASP ASN TYR SEQRES 6 A 684 PHE SER ASP LEU GLY VAL THR ALA LEU TRP ILE SER GLN SEQRES 7 A 684 PRO VAL GLU ASN ILE PHE ALA THR ILE ASN TYR SER GLY SEQRES 8 A 684 VAL THR ASN THR ALA TYR HIS GLY TYR TRP ALA ARG ASP SEQRES 9 A 684 PHE LYS LYS THR ASN PRO TYR PHE GLY THR MET ALA ASP SEQRES 10 A 684 PHE GLN ASN LEU ILE THR THR ALA HIS ALA LYS GLY ILE SEQRES 11 A 684 LYS ILE VAL ILE ASP PHE ALA PRO ASN HIS THR SER PRO SEQRES 12 A 684 ALA MET GLU THR ASP THR SER PHE ALA GLU ASN GLY ARG SEQRES 13 A 684 LEU TYR ASP ASN GLY THR LEU VAL GLY GLY TYR THR ASN SEQRES 14 A 684 ASP THR ASN GLY TYR PHE HIS HIS ASN GLY GLY SER ASP SEQRES 15 A 684 PHE SER SER LEU GLU ASN GLY ILE TYR LYS ASN LEU TYR SEQRES 16 A 684 ASP LEU ALA ASP PHE ASN HIS ASN ASN ALA THR ILE ASP SEQRES 17 A 684 LYS TYR PHE LYS ASP ALA ILE LYS LEU TRP LEU ASP MET SEQRES 18 A 684 GLY VAL ASP GLY ILE ARG VAL ALA ALA VAL LYS HIS MET SEQRES 19 A 684 PRO LEU GLY TRP GLN LYS SER TRP MET SER SER ILE TYR SEQRES 20 A 684 ALA HIS LYS PRO VAL PHE THR PHE GLY GLU TRP PHE LEU SEQRES 21 A 684 GLY SER ALA ALA SER ASP ALA ASP ASN THR ASP PHE ALA SEQRES 22 A 684 ASN LYS SER GLY MET SER LEU LEU ASP PHE ARG PHE ASN SEQRES 23 A 684 SER ALA VAL ARG ASN VAL PHE ARG ASP ASN THR SER ASN SEQRES 24 A 684 MET TYR ALA LEU ASP SER MET ILE ASN SER THR ALA THR SEQRES 25 A 684 ASP TYR ASN GLN VAL ASN ASP GLN VAL THR PHE ILE ASP SEQRES 26 A 684 ASN HIS ASP MET ASP ARG PHE LYS THR SER ALA VAL ASN SEQRES 27 A 684 ASN ARG ARG LEU GLU GLN ALA LEU ALA PHE THR LEU THR SEQRES 28 A 684 SER ARG GLY VAL PRO ALA ILE TYR TYR GLY THR GLU GLN SEQRES 29 A 684 TYR LEU THR GLY ASN GLY ASP PRO ASP ASN ARG ALA LYS SEQRES 30 A 684 MET PRO SER PHE SER LYS SER THR THR ALA PHE ASN VAL SEQRES 31 A 684 ILE SER LYS LEU ALA PRO LEU ARG LYS SER ASN PRO ALA SEQRES 32 A 684 ILE ALA TYR GLY SER THR GLN GLN ARG TRP ILE ASN ASN SEQRES 33 A 684 ASP VAL TYR VAL TYR GLU ARG LYS PHE GLY LYS SER VAL SEQRES 34 A 684 ALA VAL VAL ALA VAL ASN ARG ASN LEU SER THR SER ALA SEQRES 35 A 684 SER ILE THR GLY LEU SER THR SER LEU PRO THR GLY SER SEQRES 36 A 684 TYR THR ASP VAL LEU GLY GLY VAL LEU ASN GLY ASN ASN SEQRES 37 A 684 ILE THR SER THR ASN GLY SER ILE ASN ASN PHE THR LEU SEQRES 38 A 684 ALA ALA GLY ALA THR ALA VAL TRP GLN TYR THR THR ALA SEQRES 39 A 684 GLU THR THR PRO THR ILE GLY HIS VAL GLY PRO VAL MET SEQRES 40 A 684 GLY LYS PRO GLY ASN VAL VAL THR ILE ASP GLY ARG GLY SEQRES 41 A 684 PHE GLY SER THR LYS GLY THR VAL TYR PHE GLY THR THR SEQRES 42 A 684 ALA VAL THR GLY ALA ALA ILE THR SER TRP GLU ASP THR SEQRES 43 A 684 GLN ILE LYS VAL THR ILE PRO SER VAL ALA ALA GLY ASN SEQRES 44 A 684 TYR ALA VAL LYS VAL ALA ALA SER GLY VAL ASN SER ASN SEQRES 45 A 684 ALA TYR ASN ASN PHE THR ILE LEU THR GLY ASP GLN VAL SEQRES 46 A 684 THR VAL ARG PHE VAL VAL ASN ASN ALA SER THR THR LEU SEQRES 47 A 684 GLY GLN ASN LEU TYR LEU THR GLY ASN VAL ALA GLU LEU SEQRES 48 A 684 GLY ASN TRP SER THR GLY SER THR ALA ILE GLY PRO ALA SEQRES 49 A 684 PHE ASN GLN VAL ILE HIS GLN TYR PRO THR TRP TYR TYR SEQRES 50 A 684 ASP VAL SER VAL PRO ALA GLY LYS GLN LEU GLU PHE LYS SEQRES 51 A 684 PHE PHE LYS LYS ASN GLY SER THR ILE THR TRP GLU SER SEQRES 52 A 684 GLY SER ASN HIS THR PHE THR THR PRO ALA SER GLY THR SEQRES 53 A 684 ALA THR VAL THR VAL ASN TRP GLN HET GLC B 1 11 HET GLC B 2 11 HET CA A 685 1 HET CA A 686 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *478(H2 O) HELIX 1 H1 TRP A 54 GLY A 70 1SEE REMARK 5 17 HELIX 2 H2 THR A 114 ALA A 127 1 14 HELIX 3 H3 SER A 185 LYS A 192 1 8 HELIX 4 H4 ASN A 204 MET A 221 1 18 HELIX 5 H5 LEU A 236 LYS A 250 1 15 HELIX 6 H6 ASP A 266 LYS A 275 1 10 HELIX 7 H7 ARG A 284 ARG A 294 1 11 HELIX 8 H8 MET A 300 TYR A 314 1 15 HELIX 9 H9 ASN A 339 SER A 352 1 14 HELIX 10 H10 THR A 385 SER A 400 1CONTAINS PRO 396 16 HELIX 11 H11 PRO A 402 ALA A 405 1 4 SHEET 1 S1 8 VAL A 16 VAL A 20 0 SHEET 2 S1 8 THR A 72 ILE A 76 1 N ALA A 73 O VAL A 16 SHEET 3 S1 8 LYS A 131 PHE A 136 1 N LYS A 131 O THR A 72 SHEET 4 S1 8 GLY A 225 ALA A 229 1 N GLY A 225 O ILE A 132 SHEET 5 S1 8 PHE A 253 GLU A 257 1 O PHE A 253 N ILE A 226 SHEET 6 S1 8 SER A 279 ASP A 282 1 N SER A 279 O THR A 254 SHEET 7 S1 8 GLN A 320 THR A 322 1 N VAL A 321 O LEU A 280 SHEET 8 S1 8 VAL A 355 TYR A 360 1 N VAL A 355 O GLN A 320 SHEET 1 S2 2 ILE A 87 TYR A 89 0 SHEET 2 S2 2 VAL A 92 ASN A 94 -1 O ASN A 94 N ILE A 87 SHEET 1 S3 2 ASN A 139 ALA A 144 0 SHEET 2 S3 2 ASP A 196 PHE A 200 -1 N PHE A 200 O ASN A 139 SHEET 1 S4 2 LEU A 157 ASP A 159 0 SHEET 2 S4 2 THR A 162 GLY A 165 -1 O GLY A 165 N LEU A 157 SHEET 1 S5 4 SER A 408 ASN A 415 0 SHEET 2 S5 4 ASP A 417 PHE A 425 -1 O VAL A 418 N ASN A 415 SHEET 3 S5 4 SER A 428 ARG A 436 1 N SER A 428 O PHE A 425 SHEET 4 S5 4 ALA A 485 TYR A 491 -1 O ALA A 485 N ASN A 435 SHEET 1 S6 2 ALA A 442 ILE A 444 0 SHEET 2 S6 2 PHE A 479 LEU A 481 -1 N PHE A 479 O ILE A 444 SHEET 1 S7 2 GLY A 454 TYR A 456 0 SHEET 2 S7 2 ILE A 469 SER A 471 -1 N ILE A 469 O TYR A 456 SHEET 1 S8 4 THR A 499 GLY A 504 0 SHEET 2 S8 4 ASN A 512 ARG A 519 -1 N THR A 515 O GLY A 504 SHEET 3 S8 4 THR A 546 ILE A 552 1 N THR A 546 O GLY A 518 SHEET 4 S8 4 ALA A 539 GLU A 544 -1 O ALA A 539 N THR A 551 SHEET 1 S9 5 VAL A 506 GLY A 508 0 SHEET 2 S9 5 TYR A 574 LEU A 580 1 N THR A 578 O VAL A 506 SHEET 3 S9 5 GLY A 558 ALA A 566 -1 O GLY A 558 N ILE A 579 SHEET 4 S9 5 THR A 527 GLY A 531 1 N THR A 527 O ALA A 565 SHEET 5 S9 5 THR A 533 VAL A 535 -1 N THR A 533 O PHE A 530 SHEET 1 S10 3 ALA A 677 TRP A 683 0 SHEET 2 S10 3 ASP A 583 ASN A 592 1 O THR A 586 N ALA A 677 SHEET 3 S10 3 TRP A 635 ALA A 643 -1 N TRP A 635 O VAL A 591 SHEET 1 S11 4 ILE A 621 ALA A 624 0 SHEET 2 S11 4 ASN A 601 ASN A 607 -1 O LEU A 602 N ALA A 624 SHEET 3 S11 4 LYS A 645 LYS A 654 1 O GLU A 648 N ASN A 607 SHEET 4 S11 4 THR A 660 GLU A 662 -1 N THR A 660 O LYS A 653 SHEET 1 S12 4 ILE A 621 ALA A 624 0 SHEET 2 S12 4 ASN A 601 ASN A 607 -1 O LEU A 602 N ALA A 624 SHEET 3 S12 4 LYS A 645 LYS A 654 1 O GLU A 648 N ASN A 607 SHEET 4 S12 4 HIS A 667 THR A 671 -1 N HIS A 667 O PHE A 649 SSBOND 1 CYS A 43 CYS A 50 1555 1555 2.01 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.47 LINK OD1 ASP A 27 CA CA A 686 1555 1555 2.78 LINK O ASN A 29 CA CA A 686 1555 1555 2.33 LINK OD1 ASN A 32 CA CA A 686 1555 1555 2.44 LINK OD1 ASN A 33 CA CA A 686 1555 1555 2.32 LINK O GLY A 51 CA CA A 686 1555 1555 2.44 LINK OD1 ASP A 53 CA CA A 686 1555 1555 3.16 LINK OD1 ASN A 139 CA CA A 685 1555 1555 2.32 LINK O ILE A 190 CA CA A 685 1555 1555 2.60 LINK OD2 ASP A 199 CA CA A 685 1555 1555 2.66 LINK OD1 ASP A 199 CA CA A 685 1555 1555 2.63 LINK O HIS A 233 CA CA A 685 1555 1555 2.53 LINK CA CA A 685 O HOH A 738 1555 1555 2.33 LINK CA CA A 685 O HOH A 745 1555 1555 2.36 LINK CA CA A 685 O HOH A 764 1555 1555 2.66 LINK CA CA A 686 O HOH A 830 1555 1555 2.29 CISPEP 1 ASP A 371 PRO A 372 0 8.39 CISPEP 2 GLY A 504 PRO A 505 0 -28.04 CISPEP 3 GLY A 622 PRO A 623 0 7.49 CISPEP 4 TYR A 632 PRO A 633 0 10.24 CRYST1 94.100 105.000 113.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008780 0.00000