PDB Short entry for 1CTL HEADER METAL BINDING PROTEIN 06-JAN-95 1CTL TITLE STRUCTURE OF THE CARBOXY-TERMINAL LIM DOMAIN FROM THE CYSTEINE RICH TITLE 2 PROTEIN CRP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIAN CYSTEINE RICH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: GIZZARD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAED4-LIM2 KEYWDS LIM DOMAIN CONTAINING PROTEINS, METAL-BINDING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR G.C.PEREZ-ALVARADO,C.MILES,J.W.MICHELSEN,H.A.LOUIS,D.R.WINGE, AUTHOR 2 M.C.BECKERLE,M.F.SUMMERS REVDAT 3 16-FEB-22 1CTL 1 KEYWDS REMARK LINK REVDAT 2 24-FEB-09 1CTL 1 VERSN REVDAT 1 03-JUN-95 1CTL 0 JRNL AUTH G.C.PEREZ-ALVARADO,C.MILES,J.W.MICHELSEN,H.A.LOUIS, JRNL AUTH 2 D.R.WINGE,M.C.BECKERLE,M.F.SUMMERS JRNL TITL STRUCTURE OF THE CARBOXY-TERMINAL LIM DOMAIN FROM THE JRNL TITL 2 CYSTEINE RICH PROTEIN CRP. JRNL REF NAT.STRUCT.BIOL. V. 1 388 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7664053 JRNL DOI 10.1038/NSB0694-388 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DSPACE REMARK 3 AUTHORS : HARE RESEARCH INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CTL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172522. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 3 146.86 64.55 REMARK 500 1 SER A 8 116.18 65.81 REMARK 500 1 ALA A 21 92.54 61.73 REMARK 500 1 VAL A 24 -168.50 -107.04 REMARK 500 1 ALA A 27 -82.43 61.54 REMARK 500 1 ALA A 39 41.77 -97.66 REMARK 500 1 LYS A 40 -48.35 -131.47 REMARK 500 1 LEU A 45 -163.63 -100.84 REMARK 500 1 ASP A 54 -95.49 60.86 REMARK 500 1 ASN A 66 62.27 -117.85 REMARK 500 1 LYS A 70 -76.13 179.98 REMARK 500 1 PHE A 74 -78.44 70.02 REMARK 500 1 ALA A 80 35.90 -166.09 REMARK 500 1 HIS A 83 -80.58 69.68 REMARK 500 2 SER A 8 -72.73 -139.94 REMARK 500 2 TYR A 19 38.89 -94.55 REMARK 500 2 ALA A 20 67.87 61.84 REMARK 500 2 ALA A 21 -64.41 -129.12 REMARK 500 2 ALA A 27 -83.22 62.75 REMARK 500 2 THR A 49 30.28 -168.60 REMARK 500 2 ALA A 51 107.97 -162.67 REMARK 500 2 LYS A 53 109.98 -166.29 REMARK 500 2 PRO A 69 91.50 -58.79 REMARK 500 2 LYS A 70 -169.12 64.38 REMARK 500 2 GLN A 76 -76.00 69.90 REMARK 500 2 ALA A 78 -162.40 61.41 REMARK 500 2 LEU A 81 -79.88 60.16 REMARK 500 2 HIS A 83 -80.44 71.58 REMARK 500 2 SER A 84 96.65 61.22 REMARK 500 3 ALA A 2 -82.71 62.29 REMARK 500 3 GLN A 3 27.17 -144.70 REMARK 500 3 ALA A 21 110.25 61.94 REMARK 500 3 ALA A 27 -82.44 61.38 REMARK 500 3 ALA A 39 41.99 -96.00 REMARK 500 3 LYS A 40 -53.57 -129.93 REMARK 500 3 LEU A 45 -163.51 -103.62 REMARK 500 3 GLU A 46 -159.26 -112.71 REMARK 500 3 THR A 49 78.68 -151.27 REMARK 500 3 LYS A 53 97.32 -175.71 REMARK 500 3 PRO A 69 91.88 -52.38 REMARK 500 3 LYS A 70 -77.45 65.22 REMARK 500 3 GLN A 76 -176.74 61.37 REMARK 500 3 ALA A 80 -82.61 62.23 REMARK 500 3 HIS A 83 -80.40 72.05 REMARK 500 3 SER A 84 -166.17 -177.27 REMARK 500 4 ALA A 2 -171.37 61.44 REMARK 500 4 ALA A 21 93.10 61.76 REMARK 500 4 PHE A 36 95.04 -60.60 REMARK 500 4 ALA A 39 41.01 -95.00 REMARK 500 4 GLU A 46 -159.34 -171.47 REMARK 500 REMARK 500 THIS ENTRY HAS 287 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 23 VAL A 24 2 -147.70 REMARK 500 TYR A 58 CYS A 59 3 -149.98 REMARK 500 TYR A 58 CYS A 59 5 -149.26 REMARK 500 GLU A 22 LYS A 23 8 -146.14 REMARK 500 LYS A 23 VAL A 24 9 -148.59 REMARK 500 TYR A 58 CYS A 59 9 -148.59 REMARK 500 LYS A 23 VAL A 24 11 -147.16 REMARK 500 TYR A 58 CYS A 59 11 -148.81 REMARK 500 TYR A 58 CYS A 59 13 -146.04 REMARK 500 LYS A 23 VAL A 24 14 -148.96 REMARK 500 TYR A 58 CYS A 59 14 -149.91 REMARK 500 TYR A 58 CYS A 59 15 -143.39 REMARK 500 LYS A 23 VAL A 24 16 -148.03 REMARK 500 TYR A 58 CYS A 59 16 -148.24 REMARK 500 LYS A 23 VAL A 24 17 -147.33 REMARK 500 GLY A 10 CYS A 11 18 -149.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 GLU A 22 0.08 SIDE CHAIN REMARK 500 8 HIS A 32 0.10 SIDE CHAIN REMARK 500 9 TYR A 58 0.08 SIDE CHAIN REMARK 500 12 HIS A 32 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 CYS A 38 -12.53 REMARK 500 1 CYS A 59 11.02 REMARK 500 1 LYS A 60 -10.92 REMARK 500 1 CYS A 62 -11.00 REMARK 500 2 VAL A 18 -10.73 REMARK 500 2 ALA A 20 10.21 REMARK 500 2 TRP A 31 -10.16 REMARK 500 3 CYS A 38 -11.95 REMARK 500 3 LYS A 60 -10.43 REMARK 500 3 CYS A 62 -10.82 REMARK 500 4 CYS A 38 -11.52 REMARK 500 5 VAL A 18 -10.74 REMARK 500 5 CYS A 38 -11.61 REMARK 500 5 CYS A 59 10.37 REMARK 500 5 LYS A 60 -10.56 REMARK 500 5 CYS A 62 -10.53 REMARK 500 6 TRP A 31 -10.91 REMARK 500 6 CYS A 38 -12.32 REMARK 500 7 LYS A 33 12.08 REMARK 500 7 CYS A 38 -11.36 REMARK 500 7 LEU A 45 10.14 REMARK 500 7 SER A 47 11.12 REMARK 500 8 VAL A 18 -13.76 REMARK 500 8 GLU A 22 11.24 REMARK 500 8 CYS A 38 -11.18 REMARK 500 8 CYS A 59 10.33 REMARK 500 8 LYS A 60 -10.61 REMARK 500 8 CYS A 62 -10.88 REMARK 500 9 TRP A 31 -10.01 REMARK 500 9 ARG A 37 -10.77 REMARK 500 9 CYS A 38 -11.15 REMARK 500 9 LYS A 60 -11.62 REMARK 500 9 CYS A 62 -10.21 REMARK 500 10 CYS A 38 -11.96 REMARK 500 10 LEU A 45 13.30 REMARK 500 10 GLU A 46 -10.85 REMARK 500 11 CYS A 11 -10.08 REMARK 500 11 LYS A 33 11.03 REMARK 500 11 CYS A 38 -12.25 REMARK 500 11 CYS A 59 10.47 REMARK 500 11 LYS A 60 -10.59 REMARK 500 11 CYS A 62 -10.63 REMARK 500 12 SER A 8 -10.07 REMARK 500 12 CYS A 38 -12.59 REMARK 500 13 GLU A 22 -11.78 REMARK 500 13 ARG A 37 -10.43 REMARK 500 13 CYS A 38 -14.76 REMARK 500 13 LEU A 45 11.90 REMARK 500 14 TRP A 31 -10.15 REMARK 500 14 CYS A 38 -11.93 REMARK 500 REMARK 500 THIS ENTRY HAS 66 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 86 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 107.0 REMARK 620 3 HIS A 32 ND1 93.5 95.8 REMARK 620 4 CYS A 35 SG 122.2 111.2 123.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 87 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 41 SG 105.5 REMARK 620 3 CYS A 59 SG 106.6 106.5 REMARK 620 4 CYS A 62 SG 125.5 105.5 106.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 86 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 87 DBREF 1CTL A 1 85 UNP P67966 CSRP1_CHICK 107 191 SEQRES 1 A 85 MET ALA GLN LYS VAL GLY GLY SER ASP GLY CYS PRO ARG SEQRES 2 A 85 CYS GLY GLN ALA VAL TYR ALA ALA GLU LYS VAL ILE GLY SEQRES 3 A 85 ALA GLY LYS SER TRP HIS LYS SER CYS PHE ARG CYS ALA SEQRES 4 A 85 LYS CYS GLY LYS SER LEU GLU SER THR THR LEU ALA ASP SEQRES 5 A 85 LYS ASP GLY GLU ILE TYR CYS LYS GLY CYS TYR ALA LYS SEQRES 6 A 85 ASN PHE GLY PRO LYS GLY PHE GLY PHE GLY GLN GLY ALA SEQRES 7 A 85 GLY ALA LEU ILE HIS SER GLN HET ZN A 86 1 HET ZN A 87 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 LYS A 60 LYS A 65 1 6 SHEET 1 A 2 GLY A 10 CYS A 11 0 SHEET 2 A 2 GLN A 16 VAL A 18 -1 O GLN A 16 N CYS A 11 SHEET 1 B 2 LYS A 23 GLY A 26 0 SHEET 2 B 2 LYS A 29 LYS A 33 -1 N TRP A 31 O VAL A 24 SHEET 1 C 2 PHE A 36 CYS A 38 0 SHEET 2 C 2 LYS A 43 LEU A 45 -1 O LYS A 43 N CYS A 38 SHEET 1 D 2 LEU A 50 LYS A 53 0 SHEET 2 D 2 GLU A 56 LYS A 60 -1 N TYR A 58 O ALA A 51 LINK SG CYS A 11 ZN ZN A 86 1555 1555 2.30 LINK SG CYS A 14 ZN ZN A 86 1555 1555 2.30 LINK ND1 HIS A 32 ZN ZN A 86 1555 1555 2.01 LINK SG CYS A 35 ZN ZN A 86 1555 1555 2.30 LINK SG CYS A 38 ZN ZN A 87 1555 1555 2.31 LINK SG CYS A 41 ZN ZN A 87 1555 1555 2.32 LINK SG CYS A 59 ZN ZN A 87 1555 1555 2.29 LINK SG CYS A 62 ZN ZN A 87 1555 1555 2.32 SITE 1 AC1 4 CYS A 11 CYS A 14 HIS A 32 CYS A 35 SITE 1 AC2 4 CYS A 38 CYS A 41 CYS A 59 CYS A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000