PDB Short entry for 1CVL HEADER HYDROLASE 09-JAN-97 1CVL TITLE CRYSTAL STRUCTURE OF BACTERIAL LIPASE FROM CHROMOBACTERIUM TITLE 2 VISCOSUM ATCC 6918 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIACYLGLYCEROL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.1.3; COMPND 5 OTHER_DETAILS: CHAIN BREAK FROM V 220 - G 222 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VISCOSUM; SOURCE 3 ORGANISM_TAXID: 42739; SOURCE 4 ATCC: 6918 KEYWDS TRIACYLGLYCEROL-HYDROLASE, X-RAY CRYSTALLOGRAPHY, KEYWDS 2 PSEUDOMONADACEAE, OXYANION, CIS-PEPTIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.LANG,B.HOFMANN,L.HAALCK,H.-J.HECHT,F.SPENER,R.D.SCHMID, AUTHOR 2 D.SCHOMBURG REVDAT 2 24-FEB-09 1CVL 1 VERSN REVDAT 1 01-APR-97 1CVL 0 JRNL AUTH D.LANG,B.HOFMANN,L.HAALCK,H.J.HECHT,F.SPENER, JRNL AUTH 2 R.D.SCHMID,D.SCHOMBURG JRNL TITL CRYSTAL STRUCTURE OF A BACTERIAL LIPASE FROM JRNL TITL 2 CHROMOBACTERIUM VISCOSUM ATCC 6918 REFINED AT 1.6 JRNL TITL 3 ANGSTROMS RESOLUTION. JRNL REF J.MOL.BIOL. V. 259 704 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8683577 JRNL DOI 10.1006/JMBI.1996.0352 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 32395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1780 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 32395 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 8.00 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.044 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.054 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.015 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.082 ; 0.075 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.169 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.212 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.704 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 13.070; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 25.000; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.640 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.260 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CVL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-93 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.05300 REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 10-14 REMARK 280 % PEG 4000, 10-14 % MPD, 100 MM CITRATE/PHOSPHATE BUFFER, PH REMARK 280 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 20.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 PARTLY DEGRADED LIPASE AS A RESULT OF UNSPECIFIC REMARK 400 PROTEOLYTIC DIGESTION DURING PURIFICATION AND/OR STORAGE REMARK 400 PROVEN BY MALDI-TOF MASS SPECTROSCOPY REMARK 400 MOLECULAR WEIGHT: CALCULATED -- 33091 DALTON REMARK 400 MEASURED -- 32839 DALTON REMARK 400 REMARK 400 LEU 17 AND THR 20 ARE RESIDUES LOCATED ON THE OXYANION REMARK 400 LOOP, A STRUCTURAL MOTIF, WHICH IS IMPORTANT FOR THE REMARK 400 STABILIZATION OF THE NEGATIVE CHARGE OF THE TETRAHEDRAL REMARK 400 INTERMEDIATE DURING ENZYME CATALYSIS. THEY POSSESS AN REMARK 400 ENERGETICALLY HIGHER CONFORMATION ACTIVE SITE SER 87 HAS REMARK 400 THE TYPICAL CONFORMATION FOR THE NUCLEOPHILE OF A REMARK 400 ALPHA/BETA HYDROLASE FOLD ENZYME. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 220 REMARK 465 LEU A 221 REMARK 465 GLY A 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 542 O HOH A 618 1556 0.73 REMARK 500 O HOH A 540 O HOH A 600 4456 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 223 N VAL A 223 CA 0.262 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 56 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -12.3 DEGREES REMARK 500 PHE A 122 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 THR A 132 CA - CB - CG2 ANGL. DEV. = 8.8 DEGREES REMARK 500 PRO A 131 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 177 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 GLY A 200 O - C - N ANGL. DEV. = 10.7 DEGREES REMARK 500 TYR A 207 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 VAL A 223 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 VAL A 223 CA - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 THR A 224 C - N - CA ANGL. DEV. = -26.2 DEGREES REMARK 500 ASP A 228 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 234 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 268 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ASP A 287 CB - CG - OD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 302 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 -160.03 59.94 REMARK 500 THR A 20 174.79 70.06 REMARK 500 SER A 87 -129.69 55.47 REMARK 500 PRO A 131 3.45 -61.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 241 OD2 REMARK 620 2 GLN A 291 O 91.7 REMARK 620 3 ASP A 287 OD1 172.7 95.4 REMARK 620 4 VAL A 295 O 87.8 82.3 91.4 REMARK 620 5 HOH A 406 O 89.2 175.2 83.6 93.1 REMARK 620 6 HOH A 555 O 88.8 94.9 92.3 175.5 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THE CATALYTIC TRIAD OF THE ACTIVE CENTER REMARK 800 CONSISTS OF THE RESIDUES SER 87 - HIS 285 - ASP 263, ALTHOUGH REMARK 800 THEY ARE NOT EXPOSED TO THE SOLVENT, BUT A NARROW CHANNEL REMARK 800 CONNECTS THEM WITH THE SURFACE. REMARK 800 SITE_IDENTIFIER: OXY REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: PERFORMED OXYANION, STABILIZED BY THE AMIDE REMARK 800 NITROGEN ATOMS OF LEU 17 AND GLN 88, ALREADY PRESENT IN CLOSED REMARK 800 CONFORMATION OF THE LIPASE. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 320 DBREF 1CVL A 1 319 UNP Q05489 LIP_BURGL 40 358 SEQRES 1 A 319 ALA ASP THR TYR ALA ALA THR ARG TYR PRO VAL ILE LEU SEQRES 2 A 319 VAL HIS GLY LEU ALA GLY THR ASP LYS PHE ALA ASN VAL SEQRES 3 A 319 VAL ASP TYR TRP TYR GLY ILE GLN SER ASP LEU GLN SER SEQRES 4 A 319 HIS GLY ALA LYS VAL TYR VAL ALA ASN LEU SER GLY PHE SEQRES 5 A 319 GLN SER ASP ASP GLY PRO ASN GLY ARG GLY GLU GLN LEU SEQRES 6 A 319 LEU ALA TYR VAL LYS GLN VAL LEU ALA ALA THR GLY ALA SEQRES 7 A 319 THR LYS VAL ASN LEU ILE GLY HIS SER GLN GLY GLY LEU SEQRES 8 A 319 THR SER ARG TYR VAL ALA ALA VAL ALA PRO GLN LEU VAL SEQRES 9 A 319 ALA SER VAL THR THR ILE GLY THR PRO HIS ARG GLY SER SEQRES 10 A 319 GLU PHE ALA ASP PHE VAL GLN ASP VAL LEU LYS THR ASP SEQRES 11 A 319 PRO THR GLY LEU SER SER THR VAL ILE ALA ALA PHE VAL SEQRES 12 A 319 ASN VAL PHE GLY THR LEU VAL SER SER SER HIS ASN THR SEQRES 13 A 319 ASP GLN ASP ALA LEU ALA ALA LEU ARG THR LEU THR THR SEQRES 14 A 319 ALA GLN THR ALA THR TYR ASN ARG ASN PHE PRO SER ALA SEQRES 15 A 319 GLY LEU GLY ALA PRO GLY SER CYS GLN THR GLY ALA ALA SEQRES 16 A 319 THR GLU THR VAL GLY GLY SER GLN HIS LEU LEU TYR SER SEQRES 17 A 319 TRP GLY GLY THR ALA ILE GLN PRO THR SER THR VAL LEU SEQRES 18 A 319 GLY VAL THR GLY ALA THR ASP THR SER THR GLY THR LEU SEQRES 19 A 319 ASP VAL ALA ASN VAL THR ASP PRO SER THR LEU ALA LEU SEQRES 20 A 319 LEU ALA THR GLY ALA VAL MET ILE ASN ARG ALA SER GLY SEQRES 21 A 319 GLN ASN ASP GLY LEU VAL SER ARG CYS SER SER LEU PHE SEQRES 22 A 319 GLY GLN VAL ILE SER THR SER TYR HIS TRP ASN HIS LEU SEQRES 23 A 319 ASP GLU ILE ASN GLN LEU LEU GLY VAL ARG GLY ALA ASN SEQRES 24 A 319 ALA GLU ASP PRO VAL ALA VAL ILE ARG THR HIS VAL ASN SEQRES 25 A 319 ARG LEU LYS LEU GLN GLY VAL HET CA A 320 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *230(H2 O) HELIX 1 1 ILE A 33 SER A 39 1 7 HELIX 2 2 ARG A 61 THR A 76 1 16 HELIX 3 3 GLY A 89 VAL A 99 5 11 HELIX 4 4 GLU A 118 LEU A 127 1 10 HELIX 5 5 THR A 137 LEU A 149 1 13 HELIX 6 6 THR A 156 ALA A 162 1 7 HELIX 7 7 THR A 169 ASN A 178 1 10 HELIX 8 8 ALA A 237 THR A 240 5 4 HELIX 9 9 SER A 243 ASN A 256 1 14 HELIX 10 10 ARG A 268 SER A 271 1 4 HELIX 11 11 PRO A 303 LEU A 316 1 14 SHEET 1 A1 6 VAL A 44 VAL A 46 0 SHEET 2 A1 6 VAL A 11 VAL A 14 1 N VAL A 11 O TYR A 45 SHEET 3 A1 6 VAL A 81 HIS A 86 1 N ASN A 82 O PRO A 10 SHEET 4 A1 6 VAL A 104 ILE A 110 1 N ALA A 105 O VAL A 81 SHEET 5 A1 6 SER A 202 GLY A 211 1 N LEU A 205 O VAL A 107 SHEET 6 A1 6 THR A 196 VAL A 199 -1 N VAL A 199 O SER A 202 SHEET 1 A2 6 VAL A 44 VAL A 46 0 SHEET 2 A2 6 PRO A 10 VAL A 14 1 N VAL A 11 O TYR A 45 SHEET 3 A2 6 VAL A 81 HIS A 86 1 N ASN A 82 O PRO A 10 SHEET 4 A2 6 VAL A 104 ILE A 110 1 N ALA A 105 O VAL A 81 SHEET 5 A2 6 SER A 202 GLY A 211 1 N LEU A 205 O VAL A 107 SHEET 6 A2 6 GLN A 275 TYR A 281 1 N SER A 278 O GLY A 210 SHEET 1 B 2 LYS A 22 PHE A 23 0 SHEET 2 B 2 VAL A 27 ASP A 28 -1 N VAL A 27 O PHE A 23 SHEET 1 C 2 ILE A 214 PRO A 216 0 SHEET 2 C 2 ALA A 226 ASP A 228 -1 N THR A 227 O GLN A 215 SSBOND 1 CYS A 190 CYS A 269 1555 1555 2.03 LINK CA CA A 320 OD2 ASP A 241 1555 1555 2.29 LINK CA CA A 320 O GLN A 291 1555 1555 2.33 LINK CA CA A 320 OD1 ASP A 287 1555 1555 2.43 LINK CA CA A 320 O VAL A 295 1555 1555 2.45 LINK CA CA A 320 O HOH A 406 1555 1555 2.42 LINK CA CA A 320 O HOH A 555 1555 1555 2.23 CISPEP 1 GLN A 291 LEU A 292 0 -5.87 SITE 1 CA 6 ASP A 241 ASP A 287 GLN A 291 VAL A 295 SITE 2 CA 6 HOH A 460 HOH A 555 SITE 1 ACT 3 SER A 87 HIS A 285 ASP A 263 SITE 1 OXY 2 LEU A 17 GLN A 88 SITE 1 AC1 7 ASP A 241 ASP A 287 GLN A 291 LEU A 292 SITE 2 AC1 7 VAL A 295 HOH A 406 HOH A 555 CRYST1 41.080 156.820 43.610 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022931 0.00000