PDB Short entry for 1CW1 HEADER OXIDOREDUCTASE 25-AUG-99 1CW1 TITLE CRYSTAL STRUCTURE OF ISOCITRATE DEHYDROGENASE MUTANT K230M BOUND TO TITLE 2 ISOCITRATE AND MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.42; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PTK513 KEYWDS OXIDOREDUCTASE, ISOCITRATE DEHYDROGENASE, MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR R.STROUD,J.FINER-MOORE REVDAT 5 07-FEB-24 1CW1 1 REMARK SHEET LINK REVDAT 4 13-JUL-11 1CW1 1 VERSN REVDAT 3 24-FEB-09 1CW1 1 VERSN REVDAT 2 07-FEB-00 1CW1 1 JRNL SEQADV REVDAT 1 01-SEP-99 1CW1 0 JRNL AUTH D.B.CHERBAVAZ,M.E.LEE,R.M.STROUD,D.E.KOSHLAND JR. JRNL TITL ACTIVE SITE WATER MOLECULES REVEALED IN THE 2.1 A RESOLUTION JRNL TITL 2 STRUCTURE OF A SITE-DIRECTED MUTANT OF ISOCITRATE JRNL TITL 3 DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 295 377 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10623532 JRNL DOI 10.1006/JMBI.1999.3195 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.LEE,D.H.DYER,O.D.KLEIN,J.M.BOLDUC,B.L.STODDARD REMARK 1 TITL MUTATIONAL ANALYSIS OF THE CATALYTIC RESIDUES LYSINE 230 AND REMARK 1 TITL 2 TYROSINE 160 IN THE NADP+ DEPENDENT ISOCITRATE DEHYDROGENASE REMARK 1 TITL 3 FROM ESCHERICHIA COLI REMARK 1 REF BIOCHEMISTRY V. 34 378 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.HURLEY,A.M.DEAN,D.E.KOSHLAND JR.,R.M.STROUD REMARK 1 TITL CATALYTIC MECHANISM OF NADP+-DEPENDENT ISOCITRATE REMARK 1 TITL 2 DEHYDROGENASE: IMPLICATIONS FROM THE STRUCTURES OF REMARK 1 TITL 3 MAGNESIUM-ISOCITRATE AND NADP+ COMPLEXES REMARK 1 REF BIOCHEMISTRY V. 30 8671 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 13840731.320 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 39597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3998 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5925 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 669 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3177 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.830 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.640 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.900 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : PARAM.ISO REMARK 3 PARAMETER FILE 4 : PARAM.SO4 REMARK 3 PARAMETER FILE 5 : PARAM19.ION REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPO.ISO REMARK 3 TOPOLOGY FILE 3 : TOPO.SO4 REMARK 3 TOPOLOGY FILE 4 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 5.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, DTT, NAN3, MN REMARK 280 -ISOCITRATE, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.40000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.57500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.40000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.52500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.57500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.52500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTUTED FROM CHAIN REMARK 300 A BY THE CRYSTALLOGRAPHIC TWO-FOLD OPERATION (Y,X,-Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 ICT A 417 O HOH A 751 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 80 -67.30 -23.89 REMARK 500 ARG A 96 -36.91 66.93 REMARK 500 SER A 113 121.81 -30.86 REMARK 500 ASP A 148 82.66 -150.73 REMARK 500 GLU A 157 -156.77 -129.02 REMARK 500 ASP A 158 178.65 74.40 REMARK 500 THR A 237 -72.74 -119.12 REMARK 500 ASP A 259 -123.78 56.53 REMARK 500 ARG A 292 54.99 -142.59 REMARK 500 ASP A 297 -97.59 -140.10 REMARK 500 ALA A 342 59.19 31.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 418 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ICT A 417 O1 REMARK 620 2 ICT A 417 O7 70.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ICT A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ICD RELATED DB: PDB REMARK 900 WILD-TYPE IDH COMPLEXED WITH MG-ISOCITRATE, ROOM TEMPERATURE REMARK 900 STRUCTURE REMARK 900 RELATED ID: 1IDC RELATED DB: PDB REMARK 900 K230M IDH COMPLEXED WITH MG-OXALOSUCCINATE, ROOM TEMPERATURE REMARK 900 STRUCTURE REMARK 900 RELATED ID: 1IDD RELATED DB: PDB REMARK 900 Y160F IDH APO PROTEIN, ROOM TEMPERATURE STRUCTURE REMARK 900 RELATED ID: 1IDF RELATED DB: PDB REMARK 900 K230M IDH APOPROTEIN, ROOM TEMPERATURE STRUCTURE DBREF 1CW1 A 1 416 UNP P08200 IDH_ECOLI 1 416 SEQADV 1CW1 MET A 230 UNP P08200 LYS 230 CONFLICT SEQRES 1 A 416 MET GLU SER LYS VAL VAL VAL PRO ALA GLN GLY LYS LYS SEQRES 2 A 416 ILE THR LEU GLN ASN GLY LYS LEU ASN VAL PRO GLU ASN SEQRES 3 A 416 PRO ILE ILE PRO TYR ILE GLU GLY ASP GLY ILE GLY VAL SEQRES 4 A 416 ASP VAL THR PRO ALA MET LEU LYS VAL VAL ASP ALA ALA SEQRES 5 A 416 VAL GLU LYS ALA TYR LYS GLY GLU ARG LYS ILE SER TRP SEQRES 6 A 416 MET GLU ILE TYR THR GLY GLU LYS SER THR GLN VAL TYR SEQRES 7 A 416 GLY GLN ASP VAL TRP LEU PRO ALA GLU THR LEU ASP LEU SEQRES 8 A 416 ILE ARG GLU TYR ARG VAL ALA ILE LYS GLY PRO LEU THR SEQRES 9 A 416 THR PRO VAL GLY GLY GLY ILE ARG SER LEU ASN VAL ALA SEQRES 10 A 416 LEU ARG GLN GLU LEU ASP LEU TYR ILE CYS LEU ARG PRO SEQRES 11 A 416 VAL ARG TYR TYR GLN GLY THR PRO SER PRO VAL LYS HIS SEQRES 12 A 416 PRO GLU LEU THR ASP MET VAL ILE PHE ARG GLU ASN SER SEQRES 13 A 416 GLU ASP ILE TYR ALA GLY ILE GLU TRP LYS ALA ASP SER SEQRES 14 A 416 ALA ASP ALA GLU LYS VAL ILE LYS PHE LEU ARG GLU GLU SEQRES 15 A 416 MET GLY VAL LYS LYS ILE ARG PHE PRO GLU HIS CYS GLY SEQRES 16 A 416 ILE GLY ILE LYS PRO CYS SER GLU GLU GLY THR LYS ARG SEQRES 17 A 416 LEU VAL ARG ALA ALA ILE GLU TYR ALA ILE ALA ASN ASP SEQRES 18 A 416 ARG ASP SER VAL THR LEU VAL HIS MET GLY ASN ILE MET SEQRES 19 A 416 LYS PHE THR GLU GLY ALA PHE LYS ASP TRP GLY TYR GLN SEQRES 20 A 416 LEU ALA ARG GLU GLU PHE GLY GLY GLU LEU ILE ASP GLY SEQRES 21 A 416 GLY PRO TRP LEU LYS VAL LYS ASN PRO ASN THR GLY LYS SEQRES 22 A 416 GLU ILE VAL ILE LYS ASP VAL ILE ALA ASP ALA PHE LEU SEQRES 23 A 416 GLN GLN ILE LEU LEU ARG PRO ALA GLU TYR ASP VAL ILE SEQRES 24 A 416 ALA CYS MET ASN LEU ASN GLY ASP TYR ILE SER ASP ALA SEQRES 25 A 416 LEU ALA ALA GLN VAL GLY GLY ILE GLY ILE ALA PRO GLY SEQRES 26 A 416 ALA ASN ILE GLY ASP GLU CYS ALA LEU PHE GLU ALA THR SEQRES 27 A 416 HIS GLY THR ALA PRO LYS TYR ALA GLY GLN ASP LYS VAL SEQRES 28 A 416 ASN PRO GLY SER ILE ILE LEU SER ALA GLU MET MET LEU SEQRES 29 A 416 ARG HIS MET GLY TRP THR GLU ALA ALA ASP LEU ILE VAL SEQRES 30 A 416 LYS GLY MET GLU GLY ALA ILE ASN ALA LYS THR VAL THR SEQRES 31 A 416 TYR ASP PHE GLU ARG LEU MET ASP GLY ALA LYS LEU LEU SEQRES 32 A 416 LYS CYS SER GLU PHE GLY ASP ALA ILE ILE GLU ASN MET HET MN A 418 1 HET SO4 A 419 5 HET ICT A 417 13 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM ICT ISOCITRIC ACID FORMUL 2 MN MN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 ICT C6 H8 O7 FORMUL 5 HOH *332(H2 O) HELIX 1 1 ILE A 37 LYS A 58 1 22 HELIX 2 2 GLY A 71 GLY A 79 1 9 HELIX 3 3 PRO A 85 ARG A 96 1 12 HELIX 4 4 SER A 113 LEU A 122 1 10 HELIX 5 5 HIS A 143 LEU A 146 5 4 HELIX 6 6 ASP A 158 GLY A 162 5 5 HELIX 7 7 SER A 169 GLU A 182 1 14 HELIX 8 8 SER A 202 ASN A 220 1 19 HELIX 9 9 THR A 237 GLY A 255 1 19 HELIX 10 10 ALA A 282 ARG A 292 1 11 HELIX 11 11 PRO A 293 TYR A 296 5 4 HELIX 12 12 MET A 302 VAL A 317 1 16 HELIX 13 13 ALA A 342 ALA A 346 5 5 HELIX 14 14 PRO A 353 MET A 367 1 15 HELIX 15 15 TRP A 369 ALA A 386 1 18 HELIX 16 16 THR A 390 ARG A 395 1 6 HELIX 17 17 LYS A 404 ASN A 415 1 12 SHEET 1 B11 SER A 64 GLU A 67 0 SHEET 2 B11 ILE A 29 ILE A 32 1 O ILE A 29 N MET A 66 SHEET 3 B11 VAL A 97 LYS A 100 1 O ILE A 99 N ILE A 32 SHEET 4 B11 ALA A 333 GLU A 336 1 O ALA A 333 N ALA A 98 SHEET 5 B11 ALA A 326 ILE A 328 -1 O ASN A 327 N LEU A 334 SHEET 6 B11 ILE A 126 ARG A 132 -1 O ILE A 126 N ILE A 328 SHEET 7 B11 ASP A 148 GLU A 154 -1 O MET A 149 N VAL A 131 SHEET 8 B11 VAL A 298 CYS A 301 1 O ILE A 299 N PHE A 152 SHEET 9 B11 SER A 224 HIS A 229 1 O SER A 224 N VAL A 298 SHEET 10 B11 GLU A 274 ILE A 281 1 O VAL A 276 N VAL A 225 SHEET 11 B11 GLU A 256 LEU A 257 -1 N GLU A 256 O LYS A 265 SHEET 1 C 2 GLU A 164 TRP A 165 0 SHEET 2 C 2 ILE A 196 GLY A 197 -1 O ILE A 196 N TRP A 165 SHEET 1 D 2 THR A 388 VAL A 389 0 SHEET 2 D 2 LYS A 401 LEU A 403 1 O LYS A 401 N VAL A 389 LINK O1 ICT A 417 MN MN A 418 1555 1555 2.51 LINK O7 ICT A 417 MN MN A 418 1555 1555 2.21 CISPEP 1 GLY A 261 PRO A 262 0 0.14 SITE 1 AC1 4 ASP A 283 ASP A 307 ASP A 311 ICT A 417 SITE 1 AC2 6 GLY A 108 GLY A 109 GLY A 110 ILE A 111 SITE 2 AC2 6 LYS A 235 HOH A 629 SITE 1 AC3 13 SER A 113 ASN A 115 VAL A 116 ARG A 119 SITE 2 AC3 13 ARG A 129 ARG A 153 TYR A 160 ILE A 233 SITE 3 AC3 13 ASP A 307 MN A 418 HOH A 482 HOH A 750 SITE 4 AC3 13 HOH A 751 CRYST1 102.800 102.800 150.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006662 0.00000