PDB Short entry for 1CZ4 HEADER HYDROLASE 01-SEP-99 1CZ4 TITLE NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE TITLE 2 OF THERMOPLASMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VCP-LIKE ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN: M1 TO E183 FOLLOWED BY A DIGLYCINE COMPND 5 SPACER; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DOUBLE-PSI BETA-BARREL, BETA-CLAM, SUBSTRATE RECOGNITION DOMAIN, KEYWDS 2 HYDROLASE EXPDTA SOLUTION NMR AUTHOR M.COLES,T.DIERCKS,J.LIERMANN,A.GROEGER,B.ROCKEL,W.BAUMEISTER, AUTHOR 2 K.KORETKE,A.LUPAS,J.PETERS,H.KESSLER REVDAT 6 16-FEB-22 1CZ4 1 REMARK REVDAT 5 11-AUG-10 1CZ4 1 REMARK REVDAT 4 24-FEB-09 1CZ4 1 VERSN REVDAT 3 01-APR-03 1CZ4 1 JRNL REVDAT 2 05-JUL-00 1CZ4 1 SOURCE REMARK DBREF SEQADV REVDAT 2 2 1 CRYST1 REVDAT 1 12-OCT-99 1CZ4 0 JRNL AUTH M.COLES,T.DIERCKS,J.LIERMANN,A.GROGER,B.ROCKEL,W.BAUMEISTER, JRNL AUTH 2 K.K.KORETKE,A.LUPAS,J.PETERS,H.KESSLER JRNL TITL THE SOLUTION STRUCTURE OF VAT-N REVEALS A 'MISSING LINK' IN JRNL TITL 2 THE EVOLUTION OF COMPLEX ENZYMES FROM A SIMPLE JRNL TITL 3 BETAALPHABETABETA ELEMENT. JRNL REF CURR.BIOL. V. 9 1158 1999 JRNL REFN ISSN 0960-9822 JRNL PMID 10531028 JRNL DOI 10.1016/S0960-9822(00)80017-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES BASED ON 1923 DISTANCE REMARK 3 RESTRAINTS; 1817 NOE BASED RESTRAINTS, 196 DIHEDRAL ANGLE REMARK 3 RESTRAINTS, 56 J-COUPLING RESTRAINTS, 106 DISTANCE RESTRAINTS REMARK 3 FOR H-BONDS, 158 CA AND 148 CB CHEMICAL SHIFT RESTRAINTS. REMARK 3 REFINED WITH A CONFORMATIONAL DATABASE POTENTIAL REMARK 4 REMARK 4 1CZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000009634. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 320; 320 REMARK 210 PH : 5.9; 5.9 REMARK 210 IONIC STRENGTH : 80 MM; 80 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4 MM VAT-NU-15N,13C; 40 MM REMARK 210 PHOSPHATE BUFFER NA; 90% H2O, 10% REMARK 210 D2O; 1.2 MM VAT-N U-15N; 40 MM REMARK 210 PHOSPHATE BUFFER NA; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_CNH REMARK 210 -NOESY; 3D_NCH-NOESY; 3D_CCH- REMARK 210 NOESY; 3D_15N-SEPARATED_NOESY; REMARK 210 3D_NNH-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, AURELIA 2.5.11, X REMARK 210 -PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. 3JHNHA COUPLING-CONSTANTS FROM AN HNHA SPECTRUM REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 80 OD2 ASP A 83 1.46 REMARK 500 O LYS A 96 H LYS A 169 1.47 REMARK 500 OD1 ASP A 27 H SER A 30 1.49 REMARK 500 H GLU A 37 OD2 ASP A 40 1.54 REMARK 500 O GLU A 93 H GLU A 163 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 148.45 -176.43 REMARK 500 ASP A 18 59.97 36.43 REMARK 500 LEU A 34 -74.05 -105.23 REMARK 500 ASP A 35 -24.56 -170.17 REMARK 500 ALA A 36 119.19 -24.57 REMARK 500 LYS A 46 -67.35 -98.39 REMARK 500 GLU A 60 34.38 -73.53 REMARK 500 ASP A 61 -27.57 -146.25 REMARK 500 ASN A 63 43.60 -81.79 REMARK 500 ASP A 83 -167.57 -57.29 REMARK 500 ARG A 105 -135.54 -140.62 REMARK 500 LEU A 110 52.26 -99.25 REMARK 500 PHE A 112 -40.06 -142.77 REMARK 500 GLU A 114 94.45 41.48 REMARK 500 ILE A 125 166.65 -47.31 REMARK 500 ARG A 126 46.68 33.07 REMARK 500 GLN A 132 -0.48 73.84 REMARK 500 ASP A 133 -176.22 -69.97 REMARK 500 PRO A 138 177.87 -46.53 REMARK 500 THR A 141 -167.50 176.97 REMARK 500 LEU A 142 -122.84 -146.06 REMARK 500 ALA A 143 -161.19 -52.81 REMARK 500 PRO A 157 -174.09 -53.07 REMARK 500 SER A 158 41.50 -86.83 REMARK 500 PRO A 176 -156.43 -71.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CZ5 RELATED DB: PDB REMARK 900 ENSEMBLE OF 25 NMR STRUCTURES REMARK 900 RELATED ID: 4376 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS, 3JHNHA COUPLING-CONSTANTS AND HET. NOE VALUES DBREF 1CZ4 A 1 183 UNP O05209 VAT_THEAC 1 183 SEQADV 1CZ4 GLY A 184 UNP O05209 VAL 184 SEE REMARK 999 SEQADV 1CZ4 GLY A 185 UNP O05209 SER 185 SEE REMARK 999 SEQRES 1 A 185 MET GLU SER ASN ASN GLY ILE ILE LEU ARG VAL ALA GLU SEQRES 2 A 185 ALA ASN SER THR ASP PRO GLY MET SER ARG VAL ARG LEU SEQRES 3 A 185 ASP GLU SER SER ARG ARG LEU LEU ASP ALA GLU ILE GLY SEQRES 4 A 185 ASP VAL VAL GLU ILE GLU LYS VAL ARG LYS THR VAL GLY SEQRES 5 A 185 ARG VAL TYR ARG ALA ARG PRO GLU ASP GLU ASN LYS GLY SEQRES 6 A 185 ILE VAL ARG ILE ASP SER VAL MET ARG ASN ASN CYS GLY SEQRES 7 A 185 ALA SER ILE GLY ASP LYS VAL LYS VAL ARG LYS VAL ARG SEQRES 8 A 185 THR GLU ILE ALA LYS LYS VAL THR LEU ALA PRO ILE ILE SEQRES 9 A 185 ARG LYS ASP GLN ARG LEU LYS PHE GLY GLU GLY ILE GLU SEQRES 10 A 185 GLU TYR VAL GLN ARG ALA LEU ILE ARG ARG PRO MET LEU SEQRES 11 A 185 GLU GLN ASP ASN ILE SER VAL PRO GLY LEU THR LEU ALA SEQRES 12 A 185 GLY GLN THR GLY LEU LEU PHE LYS VAL VAL LYS THR LEU SEQRES 13 A 185 PRO SER LYS VAL PRO VAL GLU ILE GLY GLU GLU THR LYS SEQRES 14 A 185 ILE GLU ILE ARG GLU GLU PRO ALA SER GLU VAL LEU GLU SEQRES 15 A 185 GLU GLY GLY HELIX 1 1 ASP A 27 LEU A 33 1 7 HELIX 2 2 ASP A 70 GLY A 78 1 9 HELIX 3 3 GLY A 115 ILE A 125 1 11 SHEET 1 A 7 GLY A 6 ALA A 12 0 SHEET 2 A 7 ILE A 66 ARG A 68 1 O VAL A 67 N ALA A 12 SHEET 3 A 7 GLY A 6 ALA A 12 1 O ARG A 10 N VAL A 67 SHEET 4 A 7 LYS A 84 VAL A 90 -1 O VAL A 85 N LEU A 9 SHEET 5 A 7 VAL A 41 GLU A 45 -1 O VAL A 41 N VAL A 90 SHEET 6 A 7 LYS A 49 ARG A 56 -1 N THR A 50 O ILE A 44 SHEET 7 A 7 ARG A 23 LEU A 26 1 O VAL A 24 N TYR A 55 SHEET 1 B 4 ASN A 134 ILE A 135 0 SHEET 2 B 4 LEU A 149 THR A 155 -1 O PHE A 150 N ILE A 135 SHEET 3 B 4 LYS A 97 ILE A 103 -1 N THR A 99 O LYS A 154 SHEET 4 B 4 LYS A 169 ILE A 172 1 O LYS A 169 N VAL A 98 SHEET 1 C 2 PRO A 128 MET A 129 0 SHEET 2 C 2 VAL A 162 GLU A 163 -1 O VAL A 162 N MET A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000