PDB Short entry for 1D6W HEADER HYDROLASE/HYDROLASE INHIBITOR 15-OCT-99 1D6W TITLE STRUCTURE OF THROMBIN COMPLEXED WITH SELECTIVE NON-ELECTROPHILIC TITLE 2 INHIBITORS HAVING CYCLOHEXYL MOIETIES AT P1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DECAPEPTIDE INHIBITOR; COMPND 7 CHAIN: I; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 8 ORGANISM_TAXID: 6421; SOURCE 9 OTHER_DETAILS: THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED KEYWDS HYDROLASE, THROMBIN, THROMBIN INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.MOCHALKIN,A.TULINSKY REVDAT 5 04-OCT-17 1D6W 1 REMARK REVDAT 4 13-JUL-11 1D6W 1 VERSN REVDAT 3 24-FEB-09 1D6W 1 VERSN REVDAT 2 01-APR-03 1D6W 1 JRNL REVDAT 1 25-OCT-00 1D6W 0 JRNL AUTH R.KRISHNAN,I.MOCHALKIN,R.ARNI,A.TULINSKY JRNL TITL STRUCTURE OF THROMBIN COMPLEXED WITH SELECTIVE JRNL TITL 2 NON-ELECTROPHILIC INHIBITORS HAVING CYCLOHEXYL MOIETIES AT JRNL TITL 3 P1. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 294 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10713516 JRNL DOI 10.1107/S0907444900000068 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 17152 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.040 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 123.0 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 8000, 0.1M SODIUM PHOSPHATE REMARK 280 BUFFER, PROTEIN CONCENTRATION: 3.5 MG/ML, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.71500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.71500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH I 525 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14M REMARK 465 ARG A 14N REMARK 465 TRP A 147A REMARK 465 THR A 147B REMARK 465 ALA A 147C REMARK 465 ASN A 147D REMARK 465 VAL A 147E REMARK 465 GLY A 147F REMARK 465 LYS A 147G REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU I 358 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 240 NE2 GLN A 244 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1A CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 GLU A 14C CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 14D CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 14D NE - CZ - NH1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 14D NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ILE A 14K CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 ASP A 14L C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 ASP A 14L CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 MET A 26 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 77A NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 84 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 175 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 184A CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 233 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 233 NE - CZ - NH1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 233 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 LEU I 364 CA - C - O ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -83.94 -123.98 REMARK 500 TYR A 60A 81.25 -156.87 REMARK 500 ASN A 60G 79.68 -163.47 REMARK 500 HIS A 71 -55.85 -128.85 REMARK 500 ASN A 78 -2.76 71.71 REMARK 500 GLU A 97A -68.00 -134.49 REMARK 500 SER A 195 142.11 -39.54 REMARK 500 SER A 214 -75.36 -109.85 REMARK 500 ASP A 243 40.63 -109.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 73 0.10 SIDE CHAIN REMARK 500 ARG A 165 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 950 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 172 O REMARK 620 2 HOH A 494 O 95.9 REMARK 620 3 LYS A 169 O 74.0 165.2 REMARK 620 4 PHE A 204A O 96.7 95.3 96.6 REMARK 620 5 HOH A 497 O 67.7 93.0 73.3 163.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 951 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 459 O REMARK 620 2 LYS A 224 O 78.4 REMARK 620 3 ARG A 221A O 98.5 87.9 REMARK 620 4 HOH A 530 O 120.6 152.7 106.5 REMARK 620 5 HOH A 460 O 103.4 68.9 143.6 86.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 950 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 00R A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN I OF DECAPEPTIDE REMARK 800 INHIBITOR DBREF 1D6W A 1B 245 UNP P00734 THRB_HUMAN 334 620 DBREF 1D6W I 355 364 UNP P28511 ITHK_HIRME 55 64 SEQRES 1 A 287 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 A 287 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR SEQRES 3 A 287 ILE ASP GLY ARG ILE VAL GLU GLY SER ASP ALA GLU ILE SEQRES 4 A 287 GLY MET SER PRO TRP GLN VAL MET LEU PHE ARG LYS SER SEQRES 5 A 287 PRO GLN GLU LEU LEU CYS GLY ALA SER LEU ILE SER ASP SEQRES 6 A 287 ARG TRP VAL LEU THR ALA ALA HIS CYS LEU LEU TYR PRO SEQRES 7 A 287 PRO TRP ASP LYS ASN PHE THR GLU ASN ASP LEU LEU VAL SEQRES 8 A 287 ARG ILE GLY LYS HIS SER ARG THR ARG TYR GLU ARG ASN SEQRES 9 A 287 ILE GLU LYS ILE SER MET LEU GLU LYS ILE TYR ILE HIS SEQRES 10 A 287 PRO ARG TYR ASN TRP ARG GLU ASN LEU ASP ARG ASP ILE SEQRES 11 A 287 ALA LEU MET LYS LEU LYS LYS PRO VAL ALA PHE SER ASP SEQRES 12 A 287 TYR ILE HIS PRO VAL CYS LEU PRO ASP ARG GLU THR ALA SEQRES 13 A 287 ALA SER LEU LEU GLN ALA GLY TYR LYS GLY ARG VAL THR SEQRES 14 A 287 GLY TRP GLY ASN LEU LYS GLU THR TRP THR ALA ASN VAL SEQRES 15 A 287 GLY LYS GLY GLN PRO SER VAL LEU GLN VAL VAL ASN LEU SEQRES 16 A 287 PRO ILE VAL GLU ARG PRO VAL CYS LYS ASP SER THR ARG SEQRES 17 A 287 ILE ARG ILE THR ASP ASN MET PHE CYS ALA GLY TYR LYS SEQRES 18 A 287 PRO ASP GLU GLY LYS ARG GLY ASP ALA CYS GLU GLY ASP SEQRES 19 A 287 SER GLY GLY PRO PHE VAL MET LYS SER PRO PHE ASN ASN SEQRES 20 A 287 ARG TRP TYR GLN MET GLY ILE VAL SER TRP GLY GLU GLY SEQRES 21 A 287 CYS ASP ARG ASP GLY LYS TYR GLY PHE TYR THR HIS VAL SEQRES 22 A 287 PHE ARG LEU LYS LYS TRP ILE GLN LYS VAL ILE ASP GLN SEQRES 23 A 287 PHE SEQRES 1 I 10 ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU MODRES 1D6W TYS I 363 TYR O-SULFO-L-TYROSINE HET TYS I 363 16 HET NA A 950 1 HET NA A 951 1 HET 00R A 380 37 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NA SODIUM ION HETNAM 00R (5S)-N-[TRANS-4-(2-AMINO-1H-IMIDAZOL-5-YL)CYCLOHEXYL]- HETNAM 2 00R 1,3-DIOXO-2-[2-(PHENYLSULFONYL)ETHYL]-2,3,5,8- HETNAM 3 00R TETRAHYDRO-1H-[1,2,4]TRIAZOLO[1,2-A]PYRIDAZINE-5- HETNAM 4 00R CARBOXAMIDE FORMUL 2 TYS C9 H11 N O6 S FORMUL 3 NA 2(NA 1+) FORMUL 5 00R C24 H29 N7 O5 S FORMUL 6 HOH *133(H2 O) HELIX 1 1 PHE A 7 SER A 11 5 5 HELIX 2 2 THR A 14B TYR A 14J 1 9 HELIX 3 3 ALA A 55 CYS A 58 5 4 HELIX 4 4 PRO A 60B ASP A 60E 5 4 HELIX 5 5 ASP A 125 LEU A 130 1 9 HELIX 6 6 GLU A 164 ASP A 170 1 7 HELIX 7 7 LEU A 234 ASP A 243 1 10 SHEET 1 A 7 SER A 20 ASP A 21 0 SHEET 2 A 7 GLN A 156 PRO A 161 -1 N VAL A 157 O SER A 20 SHEET 3 A 7 LYS A 135 GLY A 140 -1 O GLY A 136 N LEU A 160 SHEET 4 A 7 PRO A 198 LYS A 202 -1 O PRO A 198 N THR A 139 SHEET 5 A 7 TRP A 207 TRP A 215 -1 N TYR A 208 O MET A 201 SHEET 6 A 7 GLY A 226 HIS A 230 -1 N PHE A 227 O TRP A 215 SHEET 7 A 7 MET A 180 ALA A 183 -1 O PHE A 181 N TYR A 228 SHEET 1 B 7 GLN A 30 ARG A 35 0 SHEET 2 B 7 GLU A 39 LEU A 46 -1 O GLU A 39 N ARG A 35 SHEET 3 B 7 TRP A 51 THR A 54 -1 N LEU A 53 O SER A 45 SHEET 4 B 7 ALA A 104 LEU A 108 -1 O ALA A 104 N THR A 54 SHEET 5 B 7 LYS A 81 ILE A 90 -1 N GLU A 86 O LYS A 107 SHEET 6 B 7 LEU A 64 ILE A 68 -1 O LEU A 64 N LEU A 85 SHEET 7 B 7 GLN A 30 ARG A 35 -1 N MET A 32 O ARG A 67 SHEET 1 C 2 LEU A 60 TYR A 60A 0 SHEET 2 C 2 LYS A 60F ASN A 60G-1 O LYS A 60F N TYR A 60A SSBOND 1 CYS A 1 CYS A 122 1555 1555 1.93 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.01 SSBOND 4 CYS A 191 CYS A 220 1555 1555 2.09 LINK NA NA A 950 O THR A 172 1555 1555 2.39 LINK NA NA A 950 O HOH A 494 1555 1555 2.24 LINK NA NA A 950 O LYS A 169 1555 1555 2.52 LINK NA NA A 951 O HOH A 459 1555 1555 2.16 LINK NA NA A 951 O LYS A 224 1555 1555 2.38 LINK NA NA A 951 O ARG A 221A 1555 1555 2.39 LINK C GLU I 362 N TYS I 363 1555 1555 1.33 LINK C TYS I 363 N LEU I 364 1555 1555 1.31 LINK NA NA A 950 O PHE A 204A 1555 4546 2.17 LINK NA NA A 950 O HOH A 497 1555 1555 2.88 LINK NA NA A 951 O HOH A 530 1555 1555 2.72 LINK NA NA A 951 O HOH A 460 1555 1555 2.66 CISPEP 1 SER A 36A PRO A 37 0 -3.37 SITE 1 AC1 5 LYS A 169 THR A 172 PHE A 204A HOH A 494 SITE 2 AC1 5 HOH A 497 SITE 1 AC2 5 ARG A 221A LYS A 224 HOH A 459 HOH A 460 SITE 2 AC2 5 HOH A 530 SITE 1 AC3 16 HIS A 57 TYR A 60A TRP A 60D GLU A 97A SITE 2 AC3 16 LEU A 99 ILE A 174 ASP A 189 SER A 195 SITE 3 AC3 16 SER A 214 TRP A 215 GLY A 216 GLU A 217 SITE 4 AC3 16 GLY A 219 TYR A 225 GLY A 226 HOH A 426 SITE 1 AC4 11 PHE A 34 GLN A 38 LEU A 65 ARG A 73 SITE 2 AC4 11 THR A 74 ARG A 75 TYR A 76 ILE A 82 SITE 3 AC4 11 GLN A 151 HOH A 473 HOH I 499 CRYST1 71.430 71.670 72.450 90.00 101.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014000 0.000000 0.002721 0.00000 SCALE2 0.000000 0.013953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014061 0.00000