PDB Short entry for 1D7N HEADER TOXIN 19-OCT-99 1D7N TITLE SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (WASP VENOM PEPTIDE (MASTOPARAN)); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VESPULA LEWISII; SOURCE 3 ORGANISM_TAXID: 7452; SOURCE 4 SECRETION: VENOM KEYWDS SODIUM DODECYL SULFATE BOUND CONFORMATION, IMMUNE SYSTEM, TOXIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.HORI,M.DEMURA,M.IWADATE,T.NIIDOME,H.AOYAGI,T.ASAKURA REVDAT 3 16-FEB-22 1D7N 1 REMARK LINK REVDAT 2 24-FEB-09 1D7N 1 VERSN REVDAT 1 20-JUN-01 1D7N 0 JRNL AUTH Y.HORI,M.DEMURA,M.IWADATE,A.S.ULRICH,T.NIIDOME,H.AOYAGI, JRNL AUTH 2 T.ASAKURA JRNL TITL INTERACTION OF MASTOPARAN WITH MEMBRANES STUDIED BY 1H-NMR JRNL TITL 2 SPECTROSCOPY IN DETERGENT MICELLES AND BY SOLID-STATE 2H-NMR JRNL TITL 3 AND 15N-NMR SPECTROSCOPY IN ORIENTED LIPID BILAYERS. JRNL REF EUR.J.BIOCHEM. V. 268 302 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11168364 JRNL DOI 10.1046/J.1432-1033.2001.01880.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII MSI NMRCHITECT 95.0 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 94 NOE-DERIVED DISTANCE CONSTRAINTS. REMARK 4 REMARK 4 1D7N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.15 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM MASTOPARAN SODIUM DODECYL REMARK 210 SULFATE- D25; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : A REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DGII MSI REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ASN A 2 -33.14 83.68 REMARK 500 5 ASN A 2 53.64 -142.77 REMARK 500 6 ASN A 2 -71.39 -58.59 REMARK 500 6 LEU A 3 -56.43 91.68 REMARK 500 7 LEU A 3 -43.14 91.61 REMARK 500 7 LYS A 12 -76.98 -92.05 REMARK 500 7 ILE A 13 31.73 85.80 REMARK 500 8 ASN A 2 -72.99 -76.80 REMARK 500 8 LEU A 3 -38.97 88.66 REMARK 500 9 LEU A 3 -43.29 92.28 REMARK 500 10 LYS A 12 -75.70 -100.98 REMARK 500 10 ILE A 13 20.12 85.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 15 DBREF 1D7N A 1 14 UNP P01514 MAST_VESLE 1 14 SEQRES 1 A 15 ILE ASN LEU LYS ALA LEU ALA ALA LEU ALA LYS LYS ILE SEQRES 2 A 15 LEU NH2 HET NH2 A 15 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 LEU A 3 LYS A 12 1 10 LINK C LEU A 14 N NH2 A 15 1555 1555 1.33 SITE 1 AC1 1 LEU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000