PDB Short entry for 1D8K HEADER GENE REGULATION 25-OCT-99 1D8K TITLE SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CENTRAL CORE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS WINGED HELIX-TURN-HELIX, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 2 INITIATIVE, RSGI, STRUCTURAL GENOMICS, GENE REGULATION EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-FEB-22 1D8K 1 REMARK REVDAT 2 24-FEB-09 1D8K 1 VERSN REVDAT 1 26-APR-00 1D8K 0 JRNL AUTH M.OKUDA,Y.WATANABE,H.OKAMURA,F.HANAOKA,Y.OHKUMA,Y.NISHIMURA JRNL TITL STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIEBETA WITH A JRNL TITL 2 NOVEL DOUBLE-STRANDED DNA-BINDING SURFACE. JRNL REF EMBO J. V. 19 1346 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 10716934 JRNL DOI 10.1093/EMBOJ/19.6.1346 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.6, EMBOSS 5 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX REMARK 3 (NMRPIPE), NAKAI, KIDERA, NAKAMURA (EMBOSS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 38 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1D8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 500MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM PROTEIN U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER, 500MM NACL; 1- REMARK 210 2MM PROTEIN U-15N; 20MM REMARK 210 PHOSPHATE BUFFER, 500MM NACL; 1- REMARK 210 2MM PROTEIN ; 20MM PHOSPHATE REMARK 210 BUFFER, 500MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; HNHA; HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, CAPP, STAPP 3.9, EMBOSS 5 REMARK 210 METHOD USED : 4D SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 -55.72 -177.59 REMARK 500 ILE A 46 -71.50 45.97 REMARK 500 GLU A 57 -73.33 -112.21 REMARK 500 LEU A 59 31.25 -77.94 REMARK 500 VAL A 60 -37.21 -133.26 REMARK 500 TYR A 78 12.07 -153.77 REMARK 500 ASN A 79 139.23 81.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D8J RELATED DB: PDB REMARK 900 RELATED ID: TRT001000206.1 RELATED DB: TARGETDB DBREF 1D8K A 1 81 UNP P29084 T2EB_HUMAN 66 146 SEQRES 1 A 81 ALA LEU SER GLY SER SER GLY TYR LYS PHE GLY VAL LEU SEQRES 2 A 81 ALA LYS ILE VAL ASN TYR MET LYS THR ARG HIS GLN ARG SEQRES 3 A 81 GLY ASP THR HIS PRO LEU THR LEU ASP GLU ILE LEU ASP SEQRES 4 A 81 GLU THR GLN HIS LEU ASP ILE GLY LEU LYS GLN LYS GLN SEQRES 5 A 81 TRP LEU MET THR GLU ALA LEU VAL ASN ASN PRO LYS ILE SEQRES 6 A 81 GLU VAL ILE ASP GLY LYS TYR ALA PHE LYS PRO LYS TYR SEQRES 7 A 81 ASN VAL ARG HELIX 1 1 PHE A 10 GLN A 25 1 16 HELIX 2 2 LEU A 34 GLU A 40 1 7 HELIX 3 3 LEU A 48 MET A 55 1 8 SHEET 1 A 3 LEU A 32 LEU A 32 0 SHEET 2 A 3 ILE A 65 ILE A 68 0 SHEET 3 A 3 LYS A 71 PHE A 74 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000