PDB Short entry for 1D8Z HEADER RNA BINDING PROTEIN 26-OCT-99 1D8Z TITLE SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN (RBD1) OF HU TITLE 2 ANTIGEN C (HUC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HU ANTIGEN C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST RNA-BINDING DOMAIN (RBD1); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PK7 KEYWDS RNA-BINDING DOMAIN, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS, RNA BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR M.INOUE,Y.MUTO,H.SAKAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-FEB-22 1D8Z 1 REMARK SEQADV REVDAT 2 24-FEB-09 1D8Z 1 VERSN REVDAT 1 07-APR-00 1D8Z 0 JRNL AUTH M.INOUE,Y.MUTO,H.SAKAMOTO,S.YOKOYAMA JRNL TITL NMR STUDIES ON FUNCTIONAL STRUCTURES OF THE AU-RICH JRNL TITL 2 ELEMENT-BINDING DOMAINS OF HU ANTIGEN C. JRNL REF NUCLEIC ACIDS RES. V. 28 1743 2000 JRNL REFN ISSN 0305-1048 JRNL PMID 10734193 JRNL DOI 10.1093/NAR/28.8.1743 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009903. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.6 REMARK 210 IONIC STRENGTH : 20 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM PROTEIN; 20 MM POTASSIUM REMARK 210 OXALATE BUFFER; 90% H2O; 10% D2O; REMARK 210 2MM PROTEIN U-15N; 20 MM REMARK 210 POTASSIUM OXALATE BUFFER; 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: REMARK 210 THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR AND REMARK 210 15N-SEPARATED REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -48.80 -159.07 REMARK 500 LYS A 3 89.79 61.75 REMARK 500 THR A 4 71.48 -118.40 REMARK 500 THR A 16 -154.79 -157.89 REMARK 500 SER A 26 42.64 -90.02 REMARK 500 ILE A 27 -39.08 -141.20 REMARK 500 ILE A 30 90.49 -55.11 REMARK 500 GLU A 31 -29.66 -37.11 REMARK 500 SER A 32 115.70 -172.65 REMARK 500 LYS A 34 71.36 -175.41 REMARK 500 ASP A 38 161.83 -43.71 REMARK 500 ILE A 40 -91.65 -111.72 REMARK 500 TYR A 47 143.56 -179.09 REMARK 500 THR A 64 -31.58 -133.29 REMARK 500 THR A 72 21.42 -154.56 REMARK 500 SER A 83 161.05 -48.70 REMARK 500 ALA A 85 62.82 67.58 REMARK 500 ILE A 87 -62.70 -142.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 37 0.32 SIDE CHAIN REMARK 500 ARG A 81 0.30 SIDE CHAIN REMARK 500 ARG A 88 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D9A RELATED DB: PDB REMARK 900 SECOND RNA-BINDING DOMAIN (RBD1) OF HUC REMARK 900 RELATED ID: TRT001000201.1 RELATED DB: TARGETDB DBREF 1D8Z A 1 88 UNP Q60900 ELAV3_MOUSE 36 123 SEQADV 1D8Z MET A 0 UNP Q60900 ASP 35 CONFLICT SEQRES 1 A 89 MET ASP SER LYS THR ASN LEU ILE VAL ASN TYR LEU PRO SEQRES 2 A 89 GLN ASN MET THR GLN ASP GLU PHE LYS SER LEU PHE GLY SEQRES 3 A 89 SER ILE GLY ASP ILE GLU SER CYS LYS LEU VAL ARG ASP SEQRES 4 A 89 LYS ILE THR GLY GLN SER LEU GLY TYR GLY PHE VAL ASN SEQRES 5 A 89 TYR SER ASP PRO ASN ASP ALA ASP LYS ALA ILE ASN THR SEQRES 6 A 89 LEU ASN GLY LEU LYS LEU GLN THR LYS THR ILE LYS VAL SEQRES 7 A 89 SER TYR ALA ARG PRO SER SER ALA SER ILE ARG HELIX 1 1 THR A 16 SER A 26 1 11 HELIX 2 2 ASP A 54 ASN A 66 1 13 SHEET 1 A 5 SER A 32 LEU A 35 0 SHEET 2 A 5 TYR A 47 ASN A 51 -1 O PHE A 49 N LYS A 34 SHEET 3 A 5 LEU A 6 ASN A 9 -1 N LEU A 6 O VAL A 50 SHEET 4 A 5 THR A 74 SER A 78 -1 N LYS A 76 O ASN A 9 SHEET 5 A 5 LEU A 68 LYS A 69 -1 O LEU A 68 N ILE A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000