PDB Short entry for 1DDA HEADER OXIDOREDUCTASE 09-NOV-99 1DDA TITLE HOMOLOGY MODEL OF ADH GG WITH ISO-URSODEOXYCHOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGAN: LIVER KEYWDS GAMMA GAMMA ALCOHOL DEHYDROGENASE, ISO-URSODEOXYCHOLIC ACID EXPDTA THEORETICAL MODEL AUTHOR H.U.MARSCHALL,U.C.OPPERMANN,S.SVENSSON,E.NORDLING,B.PERSSON, AUTHOR 2 J.O.HOOG,H.JORNVALL REVDAT 2 23-MAY-00 1DDA 1 JRNL REVDAT 1 19-NOV-99 1DDA 0 JRNL AUTH H.U.MARSCHALL,U.C.OPPERMANN,S.SVENSSON,E.NORDLING, JRNL AUTH 2 B.PERSSON,J.O.HOOG,H.JORNVALL JRNL TITL HUMAN LIVER CLASS I ALCOHOL DEHYDROGENASE JRNL TITL 2 GAMMAGAMMA ISOZYME: THE SOLE CYTOSOLIC JRNL TITL 3 3BETA-HYDROXYSTEROID DEHYDROGENASE OF ISO BILE JRNL TITL 4 ACIDS. JRNL REF HEPATOLOGY V. 31 990 2000 JRNL REFN US ISSN 0270-9139 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE ARE BASED ON THE PDB- REMARK 3 FILE 3BTO REMARK 4 REMARK 4 1DDA COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-1999. REMARK 100 THE RCSB ID CODE IS RCSB009991. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NE2 HIS A 67 O1B IU5 900 2.09 DBREF 1DDA A 1 374 UNP P00326 ADHG_HUMAN 1 374 DBREF 1DDA B 1 374 UNP P00326 ADHG_HUMAN 1 374 SEQADV 1DDA GLN A 271 UNP P00326 ARG 271 CONFLICT SEQADV 1DDA VAL A 349 UNP P00326 ILE 349 CONFLICT SEQADV 1DDA GLN B 271 UNP P00326 ARG 271 CONFLICT SEQADV 1DDA VAL B 349 UNP P00326 ILE 349 CONFLICT SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 A 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 A 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 A 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 A 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 A 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 A 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE SEQRES 1 B 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 B 374 LEU TRP GLU LEU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 B 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 B 374 MET VAL ALA ALA GLY ILE CYS ARG SER ASP GLU HIS VAL SEQRES 5 B 374 VAL SER GLY ASN LEU VAL THR PRO LEU PRO VAL ILE LEU SEQRES 6 B 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER VAL GLY GLU SEQRES 7 B 374 GLY VAL THR THR VAL LYS PRO GLY ASP LYS VAL ILE PRO SEQRES 8 B 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG ILE CYS LYS SEQRES 9 B 374 ASN PRO GLU SER ASN TYR CYS LEU LYS ASN ASP LEU GLY SEQRES 10 B 374 ASN PRO ARG GLY THR LEU GLN ASP GLY THR ARG ARG PHE SEQRES 11 B 374 THR CYS SER GLY LYS PRO ILE HIS HIS PHE VAL GLY VAL SEQRES 12 B 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ASN ALA SEQRES 13 B 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 B 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 B 374 ALA VAL LYS VAL ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL VAL SEQRES 17 B 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE ALA SEQRES 18 B 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 B 374 LEU GLY ALA THR GLU CYS ILE ASN PRO GLN ASP TYR LYS SEQRES 20 B 374 LYS PRO ILE GLN GLU VAL LEU LYS GLU MET THR ASP GLY SEQRES 21 B 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY GLN LEU ASP SEQRES 22 B 374 THR MET MET ALA SER LEU LEU CYS CYS HIS GLU ALA CYS SEQRES 23 B 374 GLY THR SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 B 374 ASN LEU SER ILE ASN PRO MET LEU LEU LEU THR GLY ARG SEQRES 25 B 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 B 374 GLU SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 B 374 LYS PHE SER LEU ASP ALA LEU ILE THR ASN VAL LEU PRO SEQRES 28 B 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 B 374 GLY LYS SER ILE ARG THR VAL LEU THR PHE HET ZN 377 1 HET ZN 378 1 HET ZN 379 1 HET ZN 380 1 HET NAD 375 44 HET NAD 376 44 HET IU5 900 28 HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM IU5 ISO-URSODEOXYCHOLIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 7 NAD 2(C21 H27 N7 O14 P2) FORMUL 9 IU5 C24 H40 O4 HELIX 1 1 CYS A 46 GLY A 55 1 10 HELIX 2 2 CYS A 100 ASN A 105 1 6 HELIX 3 3 PRO A 165 CYS A 170 1 6 HELIX 4 4 LEU A 171 GLY A 173 5 3 HELIX 5 5 CYS A 174 LYS A 185 1 12 HELIX 6 6 GLY A 201 GLY A 215 1 15 HELIX 7 7 ASN A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 LEU A 235 1 8 HELIX 9 9 ASN A 242 TYR A 246 5 5 HELIX 10 10 PRO A 249 THR A 258 1 10 HELIX 11 11 GLN A 271 CYS A 282 1 12 HELIX 12 12 PRO A 305 THR A 310 1 6 HELIX 13 13 ILE A 318 PHE A 322 5 5 HELIX 14 14 LYS A 323 ALA A 337 1 15 HELIX 15 15 LEU A 342 ALA A 344 5 3 HELIX 16 16 LYS A 354 GLY A 365 1 12 HELIX 17 17 CYS B 46 GLY B 55 1 10 HELIX 18 18 CYS B 100 ASN B 105 1 6 HELIX 19 19 PRO B 165 CYS B 170 1 6 HELIX 20 20 LEU B 171 GLY B 173 5 3 HELIX 21 21 CYS B 174 LYS B 185 1 12 HELIX 22 22 GLY B 201 GLY B 215 1 15 HELIX 23 23 ASN B 225 ASP B 227 5 3 HELIX 24 24 LYS B 228 LEU B 235 1 8 HELIX 25 25 PRO B 249 THR B 258 1 10 HELIX 26 26 GLN B 271 CYS B 282 1 12 HELIX 27 27 PRO B 305 THR B 310 1 6 HELIX 28 28 ILE B 318 PHE B 322 5 5 HELIX 29 29 LYS B 323 ALA B 337 1 15 HELIX 30 30 LEU B 342 ALA B 344 5 3 HELIX 31 31 LYS B 354 GLY B 365 1 12 SHEET 1 A 5 VAL A 63 ILE A 64 0 SHEET 2 A 5 ILE A 7 LEU A 14 -1 N LEU A 14 O VAL A 63 SHEET 3 A 5 SER A 22 VAL A 28 -1 O SER A 22 N VAL A 13 SHEET 4 A 5 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 5 A 5 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 VAL A 157 LYS A 159 0 SHEET 2 B 5 LYS A 88 PRO A 91 -1 N ILE A 90 O ALA A 158 SHEET 3 B 5 ALA A 69 VAL A 76 -1 O GLY A 71 N VAL A 89 SHEET 4 B 5 GLU A 35 GLY A 44 -1 O ARG A 37 N GLU A 74 SHEET 5 B 5 TYR A 149 ASP A 153 -1 O THR A 150 N ILE A 38 SHEET 1 B1 6 VAL A 157 LYS A 159 0 SHEET 2 B1 6 LYS A 88 PRO A 91 -1 N ILE A 90 O ALA A 158 SHEET 3 B1 6 ALA A 69 VAL A 76 -1 O GLY A 71 N VAL A 89 SHEET 4 B1 6 GLU A 35 GLY A 44 -1 O ARG A 37 N GLU A 74 SHEET 5 B1 6 ARG A 369 THR A 373 -1 N LEU A 372 O ALA A 43 SHEET 6 B1 6 ILE A 346 PRO A 351 1 N THR A 347 O ARG A 369 SHEET 1 C12 GLU A 239 ILE A 241 0 SHEET 2 C12 ARG A 218 VAL A 222 1 O ILE A 219 N GLU A 239 SHEET 3 C12 THR A 194 PHE A 198 1 N CYS A 195 O ARG A 218 SHEET 4 C12 PHE A 264 GLU A 267 1 N PHE A 264 O THR A 194 SHEET 5 C12 THR A 288 ILE A 291 1 O THR A 288 N SER A 265 SHEET 6 C12 THR A 313 GLY A 316 1 O THR A 313 N SER A 289 SHEET 7 C12 THR B 313 GLY B 316 -1 O TRP B 314 N TRP A 314 SHEET 8 C12 THR B 288 ILE B 291 1 N SER B 289 O THR B 313 SHEET 9 C12 PHE B 264 GLU B 267 1 O SER B 265 N VAL B 290 SHEET 10 C12 THR B 194 PHE B 198 1 O THR B 194 N PHE B 264 SHEET 11 C12 ARG B 218 VAL B 222 1 O ARG B 218 N CYS B 195 SHEET 12 C12 GLU B 239 ILE B 241 1 O GLU B 239 N ALA B 221 SHEET 1 D 2 LEU A 301 ILE A 303 0 SHEET 2 D 2 LEU B 301 ILE B 303 -1 N LEU B 301 O ILE A 303 SHEET 1 E 5 VAL B 63 ILE B 64 0 SHEET 2 E 5 ILE B 7 LEU B 14 -1 N LEU B 14 O VAL B 63 SHEET 3 E 5 SER B 22 VAL B 28 -1 O SER B 22 N VAL B 13 SHEET 4 E 5 PHE B 130 CYS B 132 -1 O THR B 131 N GLU B 27 SHEET 5 E 5 LYS B 135 ILE B 137 -1 O LYS B 135 N CYS B 132 SHEET 1 F 5 VAL B 157 LYS B 159 0 SHEET 2 F 5 LYS B 88 PRO B 91 -1 N ILE B 90 O ALA B 158 SHEET 3 F 5 ALA B 69 VAL B 76 -1 O GLY B 71 N VAL B 89 SHEET 4 F 5 GLU B 35 GLY B 44 -1 O ARG B 37 N GLU B 74 SHEET 5 F 5 TYR B 149 ASP B 153 -1 O THR B 150 N ILE B 38 SHEET 1 F1 6 VAL B 157 LYS B 159 0 SHEET 2 F1 6 LYS B 88 PRO B 91 -1 N ILE B 90 O ALA B 158 SHEET 3 F1 6 ALA B 69 VAL B 76 -1 O GLY B 71 N VAL B 89 SHEET 4 F1 6 GLU B 35 GLY B 44 -1 O ARG B 37 N GLU B 74 SHEET 5 F1 6 ARG B 369 THR B 373 -1 N LEU B 372 O ALA B 43 SHEET 6 F1 6 ILE B 346 PRO B 351 1 N THR B 347 O ARG B 369 SSBOND 1 CYS A 195 CYS A 211 CISPEP 1 LEU A 61 PRO A 62 0 -22.86 CISPEP 2 LEU B 61 PRO B 62 0 -17.25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000