PDB Short entry for 1DKG HEADER COMPLEX (HSP24/HSP70) 13-FEB-97 1DKG TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE TITLE 2 ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE EXCHANGE FACTOR GRPE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: ELASTASE PROTEOLYSIS PRODUCT, RESIDUES 34 - 197; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MOLECULAR CHAPERONE DNAK; COMPND 9 CHAIN: D; COMPND 10 FRAGMENT: ATPASE DOMAIN RESIDUES 3 - 383; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: BL21 (DE3); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 CELL_LINE: BL21 (DE3); SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS HSP70, GRPE, MOLECULAR CHAPERONE, NUCLEOTIDE EXCHANGE FACTOR, COILED- KEYWDS 2 COIL, COMPLEX (HSP24-HSP70), COMPLEX (HSP24-HSP70) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.J.HARRISON,J.KURIYAN REVDAT 4 07-FEB-24 1DKG 1 REMARK REVDAT 3 03-NOV-21 1DKG 1 SEQADV REVDAT 2 24-FEB-09 1DKG 1 VERSN REVDAT 1 20-AUG-97 1DKG 0 JRNL AUTH C.J.HARRISON,M.HAYER-HARTL,M.DI LIBERTO,F.HARTL,J.KURIYAN JRNL TITL CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE JRNL TITL 2 BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK. JRNL REF SCIENCE V. 276 431 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9103205 JRNL DOI 10.1126/SCIENCE.276.5311.431 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0001 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 23930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.ION REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION, TORSION ANGLE REMARK 3 REFINEMENT REMARK 4 REMARK 4 1DKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 29.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.51500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.25750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 GLU A 15 REMARK 465 GLU A 16 REMARK 465 ILE A 17 REMARK 465 ILE A 18 REMARK 465 MET A 19 REMARK 465 ASP A 20 REMARK 465 GLN A 21 REMARK 465 HIS A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ILE A 25 REMARK 465 GLU A 26 REMARK 465 ALA A 27 REMARK 465 VAL A 28 REMARK 465 GLU A 29 REMARK 465 PRO A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 ASP A 110 REMARK 465 LYS A 111 REMARK 465 ALA A 112 REMARK 465 ASN A 113 REMARK 465 PRO A 114 REMARK 465 ASP A 115 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 GLU B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 ILE B 17 REMARK 465 ILE B 18 REMARK 465 MET B 19 REMARK 465 ASP B 20 REMARK 465 GLN B 21 REMARK 465 HIS B 22 REMARK 465 GLU B 23 REMARK 465 GLU B 24 REMARK 465 ILE B 25 REMARK 465 GLU B 26 REMARK 465 ALA B 27 REMARK 465 VAL B 28 REMARK 465 GLU B 29 REMARK 465 PRO B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 SER B 33 REMARK 465 ALA B 34 REMARK 465 GLU B 35 REMARK 465 GLN B 36 REMARK 465 VAL B 37 REMARK 465 ALA B 109 REMARK 465 ASP B 110 REMARK 465 LYS B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 PRO B 114 REMARK 465 ASP B 115 REMARK 465 LYS B 196 REMARK 465 ALA B 197 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 GLY D 184 REMARK 465 VAL D 210 REMARK 465 ASP D 211 REMARK 465 GLY D 212 REMARK 465 GLU D 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 75 CD NE CZ NH1 NH2 REMARK 470 SER A 117 OG REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 78 CD1 CD2 REMARK 470 ASP B 79 OD1 OD2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 VAL B 108 CG1 CG2 REMARK 470 SER B 117 OG REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 GLN D 44 CG CD OE1 NE2 REMARK 470 GLN D 78 CG CD OE1 NE2 REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 GLN D 83 CG CD OE1 NE2 REMARK 470 ARG D 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 85 CG OD1 OD2 REMARK 470 ARG D 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 183 CG CD CE NZ REMARK 470 ASP D 208 CG OD1 OD2 REMARK 470 GLU D 209 CB CG CD OE1 OE2 REMARK 470 LYS D 214 CG CD CE NZ REMARK 470 THR D 291 OG1 CG2 REMARK 470 SER D 330 OG REMARK 470 LEU D 382 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 341 N GLN D 343 2.08 REMARK 500 OD2 ASP B 100 NH2 ARG B 186 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 132 CG ASP B 132 OD1 0.294 REMARK 500 ASP B 132 CG ASP B 132 OD2 0.314 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 139.02 -38.32 REMARK 500 GLN A 36 58.52 -153.06 REMARK 500 ASP A 79 -35.66 -37.45 REMARK 500 ILE A 92 -0.10 -53.45 REMARK 500 ALA A 143 41.55 -165.72 REMARK 500 ASN A 146 56.19 37.42 REMARK 500 VAL A 153 29.50 -156.77 REMARK 500 ALA A 158 146.36 176.58 REMARK 500 ARG A 186 108.00 -169.08 REMARK 500 LYS A 196 -66.14 -4.72 REMARK 500 GLN B 50 -33.09 -35.09 REMARK 500 GLU B 53 -70.56 -57.43 REMARK 500 ARG B 73 -71.84 -63.95 REMARK 500 ILE B 92 -32.38 -38.40 REMARK 500 ALA B 143 23.12 -171.82 REMARK 500 ALA B 166 153.64 -44.22 REMARK 500 ARG B 183 105.28 -45.57 REMARK 500 ARG B 186 113.67 -164.36 REMARK 500 ILE D 4 56.97 -104.92 REMARK 500 ILE D 5 123.48 -25.90 REMARK 500 ASN D 29 -173.73 -59.05 REMARK 500 PRO D 37 145.08 -38.99 REMARK 500 THR D 43 152.50 -43.81 REMARK 500 ASP D 45 9.76 -68.56 REMARK 500 THR D 60 -5.87 -55.15 REMARK 500 ASN D 61 56.10 -157.78 REMARK 500 ILE D 73 -67.95 -23.90 REMARK 500 PHE D 77 -16.41 -42.14 REMARK 500 ASP D 79 153.10 159.65 REMARK 500 GLU D 81 -81.93 -49.68 REMARK 500 THR D 136 0.17 -151.06 REMARK 500 ALA D 144 -17.51 -43.22 REMARK 500 ASP D 148 -37.45 -35.24 REMARK 500 VAL D 165 93.92 -57.09 REMARK 500 ARG D 167 116.14 152.11 REMARK 500 LEU D 181 57.97 -100.88 REMARK 500 ASN D 187 119.68 -167.26 REMARK 500 ILE D 207 66.86 -103.53 REMARK 500 ASP D 208 108.41 -52.83 REMARK 500 VAL D 218 108.68 -58.29 REMARK 500 LEU D 227 102.23 -173.61 REMARK 500 GLN D 248 -0.33 -149.41 REMARK 500 LEU D 273 38.42 -76.21 REMARK 500 TYR D 285 46.21 35.48 REMARK 500 THR D 287 -161.84 -171.30 REMARK 500 ASP D 289 -158.03 -152.24 REMARK 500 VAL D 331 -13.15 -49.81 REMARK 500 LYS D 351 -79.96 -63.12 REMARK 500 LYS D 352 -26.63 -30.40 REMARK 500 LYS D 363 27.26 -142.29 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 132 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1DKG A 1 197 UNP P09372 GRPE_ECOLI 1 197 DBREF 1DKG B 1 197 UNP P09372 GRPE_ECOLI 1 197 DBREF 1DKG D 2 383 UNP P04475 DNAK_ECOLI 1 382 SEQADV 1DKG ASP A 122 UNP P09372 GLY 122 ENGINEERED MUTATION SEQADV 1DKG ASP B 122 UNP P09372 GLY 122 ENGINEERED MUTATION SEQADV 1DKG LEU D 319 UNP P04475 PRO 318 ENGINEERED MUTATION SEQRES 1 A 197 MET SER SER LYS GLU GLN LYS THR PRO GLU GLY GLN ALA SEQRES 2 A 197 PRO GLU GLU ILE ILE MET ASP GLN HIS GLU GLU ILE GLU SEQRES 3 A 197 ALA VAL GLU PRO GLU ALA SER ALA GLU GLN VAL ASP PRO SEQRES 4 A 197 ARG ASP GLU LYS VAL ALA ASN LEU GLU ALA GLN LEU ALA SEQRES 5 A 197 GLU ALA GLN THR ARG GLU ARG ASP GLY ILE LEU ARG VAL SEQRES 6 A 197 LYS ALA GLU MET GLU ASN LEU ARG ARG ARG THR GLU LEU SEQRES 7 A 197 ASP ILE GLU LYS ALA HIS LYS PHE ALA LEU GLU LYS PHE SEQRES 8 A 197 ILE ASN GLU LEU LEU PRO VAL ILE ASP SER LEU ASP ARG SEQRES 9 A 197 ALA LEU GLU VAL ALA ASP LYS ALA ASN PRO ASP MET SER SEQRES 10 A 197 ALA MET VAL GLU ASP ILE GLU LEU THR LEU LYS SER MET SEQRES 11 A 197 LEU ASP VAL VAL ARG LYS PHE GLY VAL GLU VAL ILE ALA SEQRES 12 A 197 GLU THR ASN VAL PRO LEU ASP PRO ASN VAL HIS GLN ALA SEQRES 13 A 197 ILE ALA MET VAL GLU SER ASP ASP VAL ALA PRO GLY ASN SEQRES 14 A 197 VAL LEU GLY ILE MET GLN LYS GLY TYR THR LEU ASN GLY SEQRES 15 A 197 ARG THR ILE ARG ALA ALA MET VAL THR VAL ALA LYS ALA SEQRES 16 A 197 LYS ALA SEQRES 1 B 197 MET SER SER LYS GLU GLN LYS THR PRO GLU GLY GLN ALA SEQRES 2 B 197 PRO GLU GLU ILE ILE MET ASP GLN HIS GLU GLU ILE GLU SEQRES 3 B 197 ALA VAL GLU PRO GLU ALA SER ALA GLU GLN VAL ASP PRO SEQRES 4 B 197 ARG ASP GLU LYS VAL ALA ASN LEU GLU ALA GLN LEU ALA SEQRES 5 B 197 GLU ALA GLN THR ARG GLU ARG ASP GLY ILE LEU ARG VAL SEQRES 6 B 197 LYS ALA GLU MET GLU ASN LEU ARG ARG ARG THR GLU LEU SEQRES 7 B 197 ASP ILE GLU LYS ALA HIS LYS PHE ALA LEU GLU LYS PHE SEQRES 8 B 197 ILE ASN GLU LEU LEU PRO VAL ILE ASP SER LEU ASP ARG SEQRES 9 B 197 ALA LEU GLU VAL ALA ASP LYS ALA ASN PRO ASP MET SER SEQRES 10 B 197 ALA MET VAL GLU ASP ILE GLU LEU THR LEU LYS SER MET SEQRES 11 B 197 LEU ASP VAL VAL ARG LYS PHE GLY VAL GLU VAL ILE ALA SEQRES 12 B 197 GLU THR ASN VAL PRO LEU ASP PRO ASN VAL HIS GLN ALA SEQRES 13 B 197 ILE ALA MET VAL GLU SER ASP ASP VAL ALA PRO GLY ASN SEQRES 14 B 197 VAL LEU GLY ILE MET GLN LYS GLY TYR THR LEU ASN GLY SEQRES 15 B 197 ARG THR ILE ARG ALA ALA MET VAL THR VAL ALA LYS ALA SEQRES 16 B 197 LYS ALA SEQRES 1 D 383 MET GLY LYS ILE ILE GLY ILE ASP LEU GLY THR THR ASN SEQRES 2 D 383 SER CYS VAL ALA ILE MET ASP GLY THR THR PRO ARG VAL SEQRES 3 D 383 LEU GLU ASN ALA GLU GLY ASP ARG THR THR PRO SER ILE SEQRES 4 D 383 ILE ALA TYR THR GLN ASP GLY GLU THR LEU VAL GLY GLN SEQRES 5 D 383 PRO ALA LYS ARG GLN ALA VAL THR ASN PRO GLN ASN THR SEQRES 6 D 383 LEU PHE ALA ILE LYS ARG LEU ILE GLY ARG ARG PHE GLN SEQRES 7 D 383 ASP GLU GLU VAL GLN ARG ASP VAL SER ILE MET PRO PHE SEQRES 8 D 383 LYS ILE ILE ALA ALA ASP ASN GLY ASP ALA TRP VAL GLU SEQRES 9 D 383 VAL LYS GLY GLN LYS MET ALA PRO PRO GLN ILE SER ALA SEQRES 10 D 383 GLU VAL LEU LYS LYS MET LYS LYS THR ALA GLU ASP TYR SEQRES 11 D 383 LEU GLY GLU PRO VAL THR GLU ALA VAL ILE THR VAL PRO SEQRES 12 D 383 ALA TYR PHE ASN ASP ALA GLN ARG GLN ALA THR LYS ASP SEQRES 13 D 383 ALA GLY ARG ILE ALA GLY LEU GLU VAL LYS ARG ILE ILE SEQRES 14 D 383 ASN GLU PRO THR ALA ALA ALA LEU ALA TYR GLY LEU ASP SEQRES 15 D 383 LYS GLY THR GLY ASN ARG THR ILE ALA VAL TYR ASP LEU SEQRES 16 D 383 GLY GLY GLY THR PHE ASP ILE SER ILE ILE GLU ILE ASP SEQRES 17 D 383 GLU VAL ASP GLY GLU LYS THR PHE GLU VAL LEU ALA THR SEQRES 18 D 383 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP SER SEQRES 19 D 383 ARG LEU ILE ASN TYR LEU VAL GLU GLU PHE LYS LYS ASP SEQRES 20 D 383 GLN GLY ILE ASP LEU ARG ASN ASP PRO LEU ALA MET GLN SEQRES 21 D 383 ARG LEU LYS GLU ALA ALA GLU LYS ALA LYS ILE GLU LEU SEQRES 22 D 383 SER SER ALA GLN GLN THR ASP VAL ASN LEU PRO TYR ILE SEQRES 23 D 383 THR ALA ASP ALA THR GLY PRO LYS HIS MET ASN ILE LYS SEQRES 24 D 383 VAL THR ARG ALA LYS LEU GLU SER LEU VAL GLU ASP LEU SEQRES 25 D 383 VAL ASN ARG SER ILE GLU LEU LEU LYS VAL ALA LEU GLN SEQRES 26 D 383 ASP ALA GLY LEU SER VAL SER ASP ILE ASP ASP VAL ILE SEQRES 27 D 383 LEU VAL GLY GLY GLN THR ARG MET PRO MET VAL GLN LYS SEQRES 28 D 383 LYS VAL ALA GLU PHE PHE GLY LYS GLU PRO ARG LYS ASP SEQRES 29 D 383 VAL ASN PRO ASP GLU ALA VAL ALA ILE GLY ALA ALA VAL SEQRES 30 D 383 GLN GLY GLY VAL LEU THR FORMUL 4 HOH *27(H2 O) HELIX 1 1 PRO A 39 LYS A 85 1 47 HELIX 2 2 LEU A 88 GLU A 94 5 7 HELIX 3 3 LEU A 96 GLU A 107 1 12 HELIX 4 4 SER A 117 VAL A 134 1 18 HELIX 5 5 ASP B 41 LEU B 106 1 66 HELIX 6 6 SER B 117 PHE B 137 1 21 HELIX 7 7 GLN D 52 GLN D 57 1 6 HELIX 8 8 VAL D 59 ASN D 64 5 6 HELIX 9 9 ILE D 69 ARG D 71 5 3 HELIX 10 10 GLU D 80 ASP D 85 1 6 HELIX 11 11 PRO D 112 LEU D 131 1 20 HELIX 12 12 ASP D 148 ALA D 161 1 14 HELIX 13 13 GLU D 171 TYR D 179 1 9 HELIX 14 14 GLY D 229 GLN D 248 1 20 HELIX 15 15 PRO D 256 SER D 274 1 19 HELIX 16 16 ARG D 302 LEU D 308 1 7 HELIX 17 17 GLU D 310 GLN D 325 1 16 HELIX 18 18 GLY D 342 ARG D 345 5 4 HELIX 19 19 PRO D 347 PHE D 356 1 10 HELIX 20 20 ALA D 370 GLN D 378 1 9 SHEET 1 A 3 VAL A 139 ILE A 142 0 SHEET 2 A 3 GLY A 177 LEU A 180 -1 N THR A 179 O GLU A 140 SHEET 3 A 3 ARG A 183 ARG A 186 -1 N ARG A 186 O TYR A 178 SHEET 1 B 3 HIS A 154 ALA A 156 0 SHEET 2 B 3 ALA A 188 VAL A 192 1 N ALA A 188 O GLN A 155 SHEET 3 B 3 VAL A 170 ILE A 173 -1 N GLY A 172 O THR A 191 SHEET 1 C 2 MET A 159 GLU A 161 0 SHEET 2 C 2 VAL A 192 LYS A 194 1 N VAL A 192 O VAL A 160 SHEET 1 D 3 VAL B 139 ILE B 142 0 SHEET 2 D 3 GLY B 177 LEU B 180 -1 N THR B 179 O GLU B 140 SHEET 3 D 3 ARG B 183 ARG B 186 -1 N ARG B 186 O TYR B 178 SHEET 1 E 2 HIS B 154 GLU B 161 0 SHEET 2 E 2 ALA B 188 LYS B 194 1 N ALA B 188 O GLN B 155 SHEET 1 F 3 GLY D 6 ASP D 8 0 SHEET 2 F 3 ASN D 13 ALA D 17 -1 N ALA D 17 O GLY D 6 SHEET 3 F 3 THR D 35 PRO D 37 -1 N THR D 36 O SER D 14 SHEET 1 G 2 ALA D 17 ASP D 20 0 SHEET 2 G 2 THR D 23 VAL D 26 -1 N ARG D 25 O ILE D 18 SHEET 1 H 3 THR D 65 PHE D 67 0 SHEET 2 H 3 ILE D 39 TYR D 42 -1 N ILE D 40 O LEU D 66 SHEET 3 H 3 THR D 48 VAL D 50 -1 N LEU D 49 O ALA D 41 SHEET 1 I 3 LYS D 92 ALA D 95 0 SHEET 2 I 3 ALA D 101 VAL D 105 -1 N GLU D 104 O LYS D 92 SHEET 3 I 3 GLN D 108 ALA D 111 -1 N MET D 110 O VAL D 103 SHEET 1 J 4 ASP D 336 VAL D 340 0 SHEET 2 J 4 ASN D 187 LEU D 195 1 N ALA D 191 O ASP D 336 SHEET 3 J 4 PHE D 200 ASP D 208 -1 N ILE D 207 O ARG D 188 SHEET 4 J 4 GLU D 217 ASP D 224 -1 N ASP D 224 O PHE D 200 SHEET 1 K 2 GLN D 278 LEU D 283 0 SHEET 2 K 2 MET D 296 THR D 301 -1 N VAL D 300 O THR D 279 SHEET 1 L 2 THR D 287 ASP D 289 0 SHEET 2 L 2 GLY D 292 LYS D 294 -1 N LYS D 294 O THR D 287 CRYST1 149.430 149.430 49.030 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020396 0.00000