PDB Short entry for 1DOA HEADER CELL CYCLE 20-DEC-99 1DOA TITLE STRUCTURE OF THE RHO FAMILY GTP-BINDING PROTEIN CDC42 IN COMPLEX WITH TITLE 2 THE MULTIFUNCTIONAL REGULATOR RHOGDI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (GTP-BINDING PROTEIN); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDC42; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (GDP-DISSOCIATION INHIBITOR 1); COMPND 8 CHAIN: B; COMPND 9 SYNONYM: RHO GDI 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 7 EXPRESSION_SYSTEM_CELL: SF9 CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 10 ORGANISM_COMMON: CATTLE; SOURCE 11 ORGANISM_TAXID: 9913; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS GTP-BINDING PROTEIN, CDC42, RHOGDI, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR G.R.HOFFMAN,N.NASSAR,R.C.CERIONE REVDAT 4 31-AUG-11 1DOA 1 HETATM VERSN REVDAT 3 24-FEB-09 1DOA 1 VERSN REVDAT 2 01-APR-03 1DOA 1 JRNL REVDAT 1 09-FEB-00 1DOA 0 JRNL AUTH G.R.HOFFMAN,N.NASSAR,R.A.CERIONE JRNL TITL STRUCTURE OF THE RHO FAMILY GTP-BINDING PROTEIN CDC42 IN JRNL TITL 2 COMPLEX WITH THE MULTIFUNCTIONAL REGULATOR RHOGDI. JRNL REF CELL(CAMBRIDGE,MASS.) V. 100 345 2000 JRNL REFN ISSN 0092-8674 JRNL PMID 10676816 JRNL DOI 10.1016/S0092-8674(00)80670-4 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1370695.270 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1563 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2344 REMARK 3 BIN R VALUE (WORKING SET) : 0.4570 REMARK 3 BIN FREE R VALUE : 0.4610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 241 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.66 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.28 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.20 REMARK 3 BSOL : 20.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : GDP_UPPSALA.PAR REMARK 3 PARAMETER FILE 3 : CARB.PAR REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GDP_UPPSALA.TOP REMARK 3 TOPOLOGY FILE 3 : CARB.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DOA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-00. REMARK 100 THE RCSB ID CODE IS RCSB010246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 100 MM GLUTAMIC ACID, REMARK 280 25 MM MGSO4, 50 MM TRIS, 2 MM NAN3, 2 MM LDAO , PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 18K, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.97000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.23139 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.72000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 41.97000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.23139 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.72000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 41.97000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.23139 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.72000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.46278 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 127.44000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.46278 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 127.44000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.46278 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 127.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 125.91000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -72.69417 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 125.91000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 72.69417 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 200 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 PRO B -12 REMARK 465 GLY B -11 REMARK 465 ILE B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 ILE B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 LEU B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 180 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 5.56 58.18 REMARK 500 ASN A 26 -16.04 79.42 REMARK 500 SER A 30 -70.51 -68.31 REMARK 500 GLU A 31 -78.37 -81.88 REMARK 500 VAL A 85 30.75 -88.57 REMARK 500 SER A 86 88.35 -154.29 REMARK 500 LYS A 96 -64.07 -92.67 REMARK 500 PRO A 106 -73.67 -44.76 REMARK 500 GLN A 116 73.09 60.44 REMARK 500 PRO A 123 -84.42 -48.76 REMARK 500 LEU A 129 -75.26 -74.75 REMARK 500 ASN A 132 33.84 -83.73 REMARK 500 LYS A 150 35.50 70.55 REMARK 500 LYS A 153 -177.95 -171.75 REMARK 500 GLN A 162 22.37 47.07 REMARK 500 GLU A 181 90.48 76.58 REMARK 500 PRO A 182 -76.22 -34.63 REMARK 500 LYS A 184 56.82 -108.94 REMARK 500 ALA B 8 -138.44 -124.06 REMARK 500 ALA B 15 40.17 -67.73 REMARK 500 ALA B 16 36.98 -87.58 REMARK 500 GLU B 17 -81.10 -145.26 REMARK 500 ASN B 18 -135.19 34.03 REMARK 500 GLU B 20 -7.59 179.43 REMARK 500 HIS B 23 74.58 -0.53 REMARK 500 LYS B 28 103.06 100.23 REMARK 500 ASP B 42 62.09 -151.95 REMARK 500 VAL B 59 -168.36 55.10 REMARK 500 ALA B 60 86.07 72.08 REMARK 500 SER B 62 -133.39 -88.55 REMARK 500 PRO B 65 -82.27 -63.97 REMARK 500 LEU B 90 36.72 -70.82 REMARK 500 LYS B 99 26.94 -150.61 REMARK 500 ASN B 119 -62.49 -106.58 REMARK 500 ARG B 120 -60.99 -104.06 REMARK 500 GLU B 121 -163.37 -104.59 REMARK 500 LEU B 170 -90.64 -123.73 REMARK 500 THR B 182 -157.84 -117.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 154 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP A 97 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 ND1 REMARK 620 2 HOH A 709 O 87.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 199 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 O 84.4 REMARK 620 3 HOH A 749 O 71.6 66.7 REMARK 620 4 GDP A 198 O2B 74.0 125.2 58.8 REMARK 620 5 HOH A 701 O 136.8 73.2 65.8 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GER A 952 DBREF 1DOA A 1 188 UNP P60953 CDC42_HUMAN 1 188 DBREF 1DOA B 1 204 UNP P19803 GDIR_BOVIN 1 204 SEQADV 1DOA GLY A -2 UNP P60953 SEE REMARK 999 SEQADV 1DOA SER A -1 UNP P60953 SEE REMARK 999 SEQADV 1DOA HIS A 0 UNP P60953 SEE REMARK 999 SEQADV 1DOA CMT A 188 UNP P60953 CYS 188 MODIFIED RESIDUE SEQADV 1DOA GLY B -14 UNP P19803 SEE REMARK 999 SEQADV 1DOA SER B -13 UNP P19803 SEE REMARK 999 SEQADV 1DOA PRO B -12 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -11 UNP P19803 SEE REMARK 999 SEQADV 1DOA ILE B -10 UNP P19803 SEE REMARK 999 SEQADV 1DOA SER B -9 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -8 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -7 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -6 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -5 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -4 UNP P19803 SEE REMARK 999 SEQADV 1DOA ILE B -3 UNP P19803 SEE REMARK 999 SEQADV 1DOA LEU B -2 UNP P19803 SEE REMARK 999 SEQADV 1DOA GLY B -1 UNP P19803 SEE REMARK 999 SEQADV 1DOA LEU B 0 UNP P19803 SEE REMARK 999 SEQRES 1 A 191 GLY SER HIS MET GLN THR ILE LYS CYS VAL VAL VAL GLY SEQRES 2 A 191 ASP GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR SEQRES 3 A 191 THR THR ASN LYS PHE PRO SER GLU TYR VAL PRO THR VAL SEQRES 4 A 191 PHE ASP ASN TYR ALA VAL THR VAL MET ILE GLY GLY GLU SEQRES 5 A 191 PRO TYR THR LEU GLY LEU PHE ASP THR ALA GLY GLN GLU SEQRES 6 A 191 ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR SEQRES 7 A 191 ASP VAL PHE LEU VAL CYS PHE SER VAL VAL SER PRO SER SEQRES 8 A 191 SER PHE GLU ASN VAL LYS GLU LYS TRP VAL PRO GLU ILE SEQRES 9 A 191 THR HIS HIS CYS PRO LYS THR PRO PHE LEU LEU VAL GLY SEQRES 10 A 191 THR GLN ILE ASP LEU ARG ASP ASP PRO SER THR ILE GLU SEQRES 11 A 191 LYS LEU ALA LYS ASN LYS GLN LYS PRO ILE THR PRO GLU SEQRES 12 A 191 THR ALA GLU LYS LEU ALA ARG ASP LEU LYS ALA VAL LYS SEQRES 13 A 191 TYR VAL GLU CYS SER ALA LEU THR GLN LYS GLY LEU LYS SEQRES 14 A 191 ASN VAL PHE ASP GLU ALA ILE LEU ALA ALA LEU GLU PRO SEQRES 15 A 191 PRO GLU PRO LYS LYS SER ARG ARG CMT SEQRES 1 B 219 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE LEU SEQRES 2 B 219 GLY LEU MET ALA GLU GLN GLU PRO THR ALA GLU GLN LEU SEQRES 3 B 219 ALA GLN ILE ALA ALA GLU ASN GLU GLU ASP GLU HIS SER SEQRES 4 B 219 VAL ASN TYR LYS PRO PRO ALA GLN LYS SER ILE GLN GLU SEQRES 5 B 219 ILE GLN GLU LEU ASP LYS ASP ASP GLU SER LEU ARG LYS SEQRES 6 B 219 TYR LYS GLU ALA LEU LEU GLY ARG VAL ALA VAL SER ALA SEQRES 7 B 219 ASP PRO ASN VAL PRO ASN VAL VAL VAL THR ARG LEU THR SEQRES 8 B 219 LEU VAL CYS SER THR ALA PRO GLY PRO LEU GLU LEU ASP SEQRES 9 B 219 LEU THR GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE SEQRES 10 B 219 VAL LEU LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER SEQRES 11 B 219 PHE ARG VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR SEQRES 12 B 219 ILE GLN HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS SEQRES 13 B 219 THR ASP TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU SEQRES 14 B 219 GLU TYR GLU PHE LEU THR PRO MET GLU GLU ALA PRO LYS SEQRES 15 B 219 GLY MET LEU ALA ARG GLY SER TYR ASN ILE LYS SER ARG SEQRES 16 B 219 PHE THR ASP ASP ASP ARG THR ASP HIS LEU SER TRP GLU SEQRES 17 B 219 TRP ASN LEU THR ILE LYS LYS GLU TRP LYS ASP MODRES 1DOA CMT A 188 CYS O-METHYLCYSTEINE HET CMT A 188 8 HET MG A 199 1 HET MG A 200 1 HET GDP A 198 28 HET GER A 952 20 HETNAM CMT O-METHYLCYSTEINE HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GER GERAN-8-YL GERAN FORMUL 1 CMT C4 H9 N O2 S FORMUL 3 MG 2(MG 2+) FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 GER C20 H34 FORMUL 7 HOH *50(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 ILE A 117 ASP A 121 5 5 HELIX 7 7 ASP A 122 ALA A 130 1 9 HELIX 8 8 THR A 138 LYS A 150 1 13 HELIX 9 9 GLY A 164 GLU A 178 1 15 HELIX 10 10 SER B 34 LEU B 41 1 8 HELIX 11 11 ASP B 45 GLY B 57 1 13 HELIX 12 12 LEU B 94 GLN B 100 5 7 SHEET 1 A 6 TYR A 40 ILE A 46 0 SHEET 2 A 6 GLU A 49 PHE A 56 -1 N GLU A 49 O ILE A 46 SHEET 3 A 6 GLN A 2 VAL A 9 1 O GLN A 2 N THR A 52 SHEET 4 A 6 VAL A 77 SER A 83 1 O VAL A 77 N VAL A 7 SHEET 5 A 6 PHE A 110 THR A 115 1 O LEU A 111 N VAL A 80 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LYS A 153 N LEU A 112 SHEET 1 B 4 GLU B 87 ASP B 89 0 SHEET 2 B 4 ARG B 74 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 B 4 GLU B 109 PHE B 116 -1 O ARG B 111 N VAL B 78 SHEET 4 B 4 TYR B 156 LEU B 159 -1 N TYR B 156 O PHE B 116 SHEET 1 C 4 GLU B 87 ASP B 89 0 SHEET 2 C 4 ARG B 74 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 C 4 GLU B 109 PHE B 116 -1 O ARG B 111 N VAL B 78 SHEET 4 C 4 GLU B 163 GLU B 164 -1 O GLU B 163 N TYR B 110 SHEET 1 D 5 PHE B 102 LYS B 105 0 SHEET 2 D 5 LEU B 190 LYS B 199 1 O ASN B 195 N PHE B 102 SHEET 3 D 5 SER B 174 THR B 182 -1 N TYR B 175 O LEU B 196 SHEET 4 D 5 VAL B 123 ARG B 134 -1 N LYS B 127 O THR B 182 SHEET 5 D 5 VAL B 137 TYR B 149 -1 O VAL B 137 N ARG B 134 LINK SG CMT A 188 C1 GER A 952 1555 1555 1.82 LINK C ARG A 187 N CMT A 188 1555 1555 1.33 LINK ND1 HIS A 0 MG MG A 200 1555 1555 1.81 LINK OG1 THR A 17 MG MG A 199 1555 1555 2.13 LINK O THR A 35 MG MG A 199 1555 1555 2.29 LINK MG MG A 199 O HOH A 749 1555 1555 2.06 LINK MG MG A 199 O2B GDP A 198 1555 1555 2.60 LINK MG MG A 199 O HOH A 701 1555 1555 2.89 LINK MG MG A 200 O HOH A 709 1555 1555 2.90 SITE 1 AC1 6 THR A 17 THR A 35 ASP A 57 GDP A 198 SITE 2 AC1 6 HOH A 701 HOH A 749 SITE 1 AC2 2 HIS A 0 HOH A 709 SITE 1 AC3 17 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC3 17 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC3 17 VAL A 33 GLN A 116 ASP A 118 SER A 158 SITE 4 AC3 17 ALA A 159 LEU A 160 MG A 199 HOH A 701 SITE 5 AC3 17 HOH A 749 SITE 1 AC4 11 ARG A 186 CMT A 188 ILE B 14 LEU B 75 SITE 2 AC4 11 TYR B 110 GLN B 130 THR B 132 ASP B 140 SITE 3 AC4 11 ALA B 171 TRP B 194 LEU B 196 CRYST1 83.940 83.940 191.160 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011913 0.006878 0.000000 0.00000 SCALE2 0.000000 0.013756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005231 0.00000