PDB Short entry for 1DT0 HEADER OXIDOREDUCTASE 10-JAN-00 1DT0 TITLE CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON TITLE 2 SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 8 EXPRESSION_SYSTEM_GENE: PSEUDOMONAS OVALIS CHROMOSOMAL PLASMID SOURCE 9 LIBRARY KEYWDS SUPEROXIDE DISMUTASE, PSEUDOMONAS OVALIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.BOND,J.HUANG,R.HAJDUK,K.FLICK,P.HEATH,B.L.STODDARD REVDAT 5 31-JAN-18 1DT0 1 REMARK REVDAT 4 04-OCT-17 1DT0 1 REMARK REVDAT 3 24-FEB-09 1DT0 1 VERSN REVDAT 2 01-APR-03 1DT0 1 JRNL REVDAT 1 20-DEC-00 1DT0 0 JRNL AUTH C.J.BOND,J.HUANG,R.HAJDUK,K.E.FLICK,P.J.HEATH,B.L.STODDARD JRNL TITL CLONING, SEQUENCE AND CRYSTALLOGRAPHIC STRUCTURE OF JRNL TITL 2 RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS JRNL TITL 3 OVALIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 1359 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 11053832 JRNL DOI 10.1107/S0907444900009537 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 36255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 566 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.150 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6M AMMONIUM SULFATE 100MM TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 25K, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.50000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.50000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 300 CONSISTING OF CHAINS A AND B IN REMARK 300 THE ASSYMETRIC UNIT. CHAIN C FORMS A DIMER REMARK 300 WITH A SYMMETRY RELATED PARTNER IN REMARK 300 AN ADJOINING UNIT CELL. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 82.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS C 196 REMARK 465 VAL C 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE C 1602 O HOH B 793 1.18 REMARK 500 OD2 ASP B 156 O HOH B 793 1.59 REMARK 500 O HOH C 1611 O HOH C 1635 1.84 REMARK 500 O HOH B 546 O HOH B 752 1.84 REMARK 500 O HOH C 1626 O HOH C 1653 1.95 REMARK 500 O HOH C 1626 O HOH C 1627 1.98 REMARK 500 O GLY B 121 O HOH B 675 2.13 REMARK 500 O PHE B 100 O HOH B 670 2.14 REMARK 500 O TYR B 163 O HOH B 654 2.16 REMARK 500 OE2 GLU A 21 NH1 ARG B 167 2.18 REMARK 500 O HOH B 552 O HOH B 698 2.19 REMARK 500 O HOH C 1633 O HOH C 1675 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1714 O HOH B 629 2654 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 156 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 156 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 0.58 -66.02 REMARK 500 LYS A 50 170.82 -53.76 REMARK 500 ALA A 84 -142.24 -137.12 REMARK 500 ARG A 167 -129.04 53.59 REMARK 500 LYS B 29 -69.01 -109.90 REMARK 500 ALA B 84 -147.99 -134.51 REMARK 500 ARG B 167 -125.34 52.03 REMARK 500 LYS C 50 171.61 -51.97 REMARK 500 ALA C 84 -144.13 -139.03 REMARK 500 ARG C 167 -127.95 53.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 HIS A 73 NE2 124.1 REMARK 620 3 HIS A 26 NE2 84.6 88.1 REMARK 620 4 HIS A 160 NE2 111.4 123.3 86.4 REMARK 620 5 HOH A1769 O 98.2 91.5 176.9 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C1602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 156 OD2 REMARK 620 2 HIS B 160 NE2 101.4 REMARK 620 3 HIS B 73 NE2 122.1 135.5 REMARK 620 4 HIS B 26 NE2 77.4 87.9 92.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C1603 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 73 NE2 84.7 REMARK 620 3 HIS C 160 NE2 81.1 126.2 REMARK 620 4 ASP C 156 OD2 79.6 117.6 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE C 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE C 1603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AR4 RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE FROM PROPIONIBACTERIUM SHERMANII ACTIVE WITH REMARK 900 FE OR MN REMARK 900 RELATED ID: 1IDS RELATED DB: PDB REMARK 900 IRON-DEPENDENT SUPEROXIDE DISMUTASE FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 AT 2.0 ANGSTROMS RESOLUTIONS REVEALS NOVEL DIMER-DIMER INTERACTIONS REMARK 900 RELATED ID: 1ISB RELATED DB: PDB REMARK 900 STRUCTURE-FUNCTION IN E. COLI IRON SUPEROXIDE DISMUTASE: REMARK 900 COMPARISONS WITH THE MANGANESE ENZYME FROM T. THERMOPHILUS REMARK 900 RELATED ID: 1ISC RELATED DB: PDB REMARK 900 IRON(III) SUPEROXIDE DISMUTASE (E.C. 1.15.1.1) COMPLEXED WITH AZIDE DBREF 1DT0 A 1 196 UNP P09223 SODF_PSEPU 1 196 DBREF 1DT0 B 1 196 UNP P09223 SODF_PSEPU 1 196 DBREF 1DT0 C 1 196 UNP P09223 SODF_PSEPU 1 196 SEQRES 1 A 197 ALA PHE GLU LEU PRO PRO LEU PRO TYR ALA HIS ASP ALA SEQRES 2 A 197 LEU GLN PRO HIS ILE SER LYS GLU THR LEU GLU PHE HIS SEQRES 3 A 197 HIS ASP LYS HIS HIS ASN THR TYR VAL VAL ASN LEU ASN SEQRES 4 A 197 ASN LEU VAL PRO GLY THR GLU PHE GLU GLY LYS THR LEU SEQRES 5 A 197 GLU GLU ILE VAL LYS THR SER SER GLY GLY ILE PHE ASN SEQRES 6 A 197 ASN ALA ALA GLN VAL TRP ASN HIS THR PHE TYR TRP ASN SEQRES 7 A 197 CYS LEU SER PRO ASN ALA GLY GLY GLN PRO THR GLY ALA SEQRES 8 A 197 LEU ALA ASP ALA ILE ASN ALA ALA PHE GLY SER PHE ASP SEQRES 9 A 197 LYS PHE LYS GLU GLU PHE THR LYS THR SER VAL GLY THR SEQRES 10 A 197 PHE GLY SER GLY TRP GLY TRP LEU VAL LYS LYS ALA ASP SEQRES 11 A 197 GLY SER LEU ALA LEU ALA SER THR ILE GLY ALA GLY CYS SEQRES 12 A 197 PRO LEU THR ILE GLY ASP THR PRO LEU LEU THR CYS ASP SEQRES 13 A 197 VAL TRP GLU HIS ALA TYR TYR ILE ASP TYR ARG ASN LEU SEQRES 14 A 197 ARG PRO LYS TYR VAL GLU ALA PHE TRP ASN LEU VAL ASN SEQRES 15 A 197 TRP ALA PHE VAL ALA GLU GLN PHE GLU GLY LYS THR TYR SEQRES 16 A 197 LYS VAL SEQRES 1 B 197 ALA PHE GLU LEU PRO PRO LEU PRO TYR ALA HIS ASP ALA SEQRES 2 B 197 LEU GLN PRO HIS ILE SER LYS GLU THR LEU GLU PHE HIS SEQRES 3 B 197 HIS ASP LYS HIS HIS ASN THR TYR VAL VAL ASN LEU ASN SEQRES 4 B 197 ASN LEU VAL PRO GLY THR GLU PHE GLU GLY LYS THR LEU SEQRES 5 B 197 GLU GLU ILE VAL LYS THR SER SER GLY GLY ILE PHE ASN SEQRES 6 B 197 ASN ALA ALA GLN VAL TRP ASN HIS THR PHE TYR TRP ASN SEQRES 7 B 197 CYS LEU SER PRO ASN ALA GLY GLY GLN PRO THR GLY ALA SEQRES 8 B 197 LEU ALA ASP ALA ILE ASN ALA ALA PHE GLY SER PHE ASP SEQRES 9 B 197 LYS PHE LYS GLU GLU PHE THR LYS THR SER VAL GLY THR SEQRES 10 B 197 PHE GLY SER GLY TRP GLY TRP LEU VAL LYS LYS ALA ASP SEQRES 11 B 197 GLY SER LEU ALA LEU ALA SER THR ILE GLY ALA GLY CYS SEQRES 12 B 197 PRO LEU THR ILE GLY ASP THR PRO LEU LEU THR CYS ASP SEQRES 13 B 197 VAL TRP GLU HIS ALA TYR TYR ILE ASP TYR ARG ASN LEU SEQRES 14 B 197 ARG PRO LYS TYR VAL GLU ALA PHE TRP ASN LEU VAL ASN SEQRES 15 B 197 TRP ALA PHE VAL ALA GLU GLN PHE GLU GLY LYS THR TYR SEQRES 16 B 197 LYS VAL SEQRES 1 C 197 ALA PHE GLU LEU PRO PRO LEU PRO TYR ALA HIS ASP ALA SEQRES 2 C 197 LEU GLN PRO HIS ILE SER LYS GLU THR LEU GLU PHE HIS SEQRES 3 C 197 HIS ASP LYS HIS HIS ASN THR TYR VAL VAL ASN LEU ASN SEQRES 4 C 197 ASN LEU VAL PRO GLY THR GLU PHE GLU GLY LYS THR LEU SEQRES 5 C 197 GLU GLU ILE VAL LYS THR SER SER GLY GLY ILE PHE ASN SEQRES 6 C 197 ASN ALA ALA GLN VAL TRP ASN HIS THR PHE TYR TRP ASN SEQRES 7 C 197 CYS LEU SER PRO ASN ALA GLY GLY GLN PRO THR GLY ALA SEQRES 8 C 197 LEU ALA ASP ALA ILE ASN ALA ALA PHE GLY SER PHE ASP SEQRES 9 C 197 LYS PHE LYS GLU GLU PHE THR LYS THR SER VAL GLY THR SEQRES 10 C 197 PHE GLY SER GLY TRP GLY TRP LEU VAL LYS LYS ALA ASP SEQRES 11 C 197 GLY SER LEU ALA LEU ALA SER THR ILE GLY ALA GLY CYS SEQRES 12 C 197 PRO LEU THR ILE GLY ASP THR PRO LEU LEU THR CYS ASP SEQRES 13 C 197 VAL TRP GLU HIS ALA TYR TYR ILE ASP TYR ARG ASN LEU SEQRES 14 C 197 ARG PRO LYS TYR VAL GLU ALA PHE TRP ASN LEU VAL ASN SEQRES 15 C 197 TRP ALA PHE VAL ALA GLU GLN PHE GLU GLY LYS THR TYR SEQRES 16 C 197 LYS VAL HET FE A1601 1 HET FE C1602 1 HET FE C1603 1 HETNAM FE FE (III) ION FORMUL 4 FE 3(FE 3+) FORMUL 7 HOH *566(H2 O) HELIX 1 1 SER A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 VAL A 42 1 14 HELIX 3 3 THR A 51 SER A 59 1 9 HELIX 4 4 SER A 60 CYS A 79 1 20 HELIX 5 5 THR A 89 GLY A 101 1 13 HELIX 6 6 SER A 102 GLY A 116 1 15 HELIX 7 7 CYS A 143 GLY A 148 5 6 HELIX 8 8 TRP A 158 ALA A 161 5 4 HELIX 9 9 TYR A 162 ARG A 167 1 6 HELIX 10 10 LEU A 169 TRP A 178 1 10 HELIX 11 11 ASN A 182 GLU A 191 1 10 HELIX 12 12 SER B 19 LYS B 29 1 11 HELIX 13 13 LYS B 29 VAL B 42 1 14 HELIX 14 14 THR B 51 SER B 59 1 9 HELIX 15 15 SER B 60 CYS B 79 1 20 HELIX 16 16 THR B 89 GLY B 101 1 13 HELIX 17 17 SER B 102 GLY B 116 1 15 HELIX 18 18 CYS B 143 GLY B 148 5 6 HELIX 19 19 TRP B 158 ALA B 161 5 4 HELIX 20 20 TYR B 162 ARG B 167 1 6 HELIX 21 21 LEU B 169 TRP B 178 1 10 HELIX 22 22 ASN B 182 GLU B 191 1 10 HELIX 23 23 SER C 19 LYS C 29 1 11 HELIX 24 24 LYS C 29 VAL C 42 1 14 HELIX 25 25 THR C 51 SER C 59 1 9 HELIX 26 26 SER C 60 CYS C 79 1 20 HELIX 27 27 THR C 89 GLY C 101 1 13 HELIX 28 28 SER C 102 GLY C 116 1 15 HELIX 29 29 CYS C 143 GLY C 148 5 6 HELIX 30 30 TRP C 158 ALA C 161 5 4 HELIX 31 31 TYR C 162 ARG C 167 1 6 HELIX 32 32 LEU C 169 TRP C 178 1 10 HELIX 33 33 ASN C 182 GLU C 191 1 10 SHEET 1 A 3 LEU A 133 ILE A 139 0 SHEET 2 A 3 GLY A 121 LYS A 127 -1 N TRP A 122 O THR A 138 SHEET 3 A 3 THR A 150 ASP A 156 -1 N THR A 150 O LYS A 127 SHEET 1 B 3 LEU B 133 ILE B 139 0 SHEET 2 B 3 GLY B 121 LYS B 127 -1 N TRP B 122 O THR B 138 SHEET 3 B 3 THR B 150 ASP B 156 -1 O THR B 150 N LYS B 127 SHEET 1 C 3 LEU C 133 ILE C 139 0 SHEET 2 C 3 GLY C 121 LYS C 127 -1 N TRP C 122 O THR C 138 SHEET 3 C 3 THR C 150 ASP C 156 -1 N THR C 150 O LYS C 127 LINK FE FE A1601 OD2 ASP A 156 1555 1555 1.93 LINK FE FE A1601 NE2 HIS A 73 1555 1555 2.07 LINK FE FE A1601 NE2 HIS A 26 1555 1555 2.09 LINK FE FE A1601 NE2 HIS A 160 1555 1555 2.35 LINK FE FE A1601 O HOH A1769 1555 1555 2.01 LINK FE FE C1602 OD2 ASP B 156 1555 1555 2.36 LINK FE FE C1602 NE2 HIS B 160 1555 1555 2.31 LINK FE FE C1602 NE2 HIS B 73 1555 1555 1.84 LINK FE FE C1602 NE2 HIS B 26 1555 1555 2.28 LINK FE FE C1603 NE2 HIS C 26 1555 1555 2.29 LINK FE FE C1603 NE2 HIS C 73 1555 1555 1.90 LINK FE FE C1603 NE2 HIS C 160 1555 1555 2.40 LINK FE FE C1603 OD2 ASP C 156 1555 1555 2.12 CISPEP 1 GLN A 15 PRO A 16 0 0.28 CISPEP 2 GLN B 15 PRO B 16 0 0.49 CISPEP 3 GLN C 15 PRO C 16 0 0.23 SITE 1 AC1 5 HIS A 26 HIS A 73 ASP A 156 HIS A 160 SITE 2 AC1 5 HOH A1769 SITE 1 AC2 5 HIS B 26 HIS B 73 ASP B 156 HIS B 160 SITE 2 AC2 5 HOH B 793 SITE 1 AC3 4 HIS C 26 HIS C 73 ASP C 156 HIS C 160 CRYST1 115.030 115.030 82.500 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008693 0.005019 0.000000 0.00000 SCALE2 0.000000 0.010038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012121 0.00000