PDB Short entry for 1ECX HEADER TRANSFERASE 26-JAN-00 1ECX TITLE NIFS-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NIFS-LIKE PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT ENZYMES, IRON-SULFUR-CLUSTER SYNTHESIS, C-S BETA LYASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.T.KAISER,T.C.CLAUSEN,G.P.BOURENKOW,H.-D.BARTUNIK,S.STEINBACHER, AUTHOR 2 R.HUBER REVDAT 6 07-FEB-24 1ECX 1 REMARK REVDAT 5 31-JAN-18 1ECX 1 REMARK REVDAT 4 13-JUL-11 1ECX 1 VERSN REVDAT 3 24-FEB-09 1ECX 1 VERSN REVDAT 2 01-APR-03 1ECX 1 JRNL REVDAT 1 20-MAR-00 1ECX 0 JRNL AUTH J.T.KAISER,T.CLAUSEN,G.P.BOURENKOW,H.D.BARTUNIK, JRNL AUTH 2 S.STEINBACHER,R.HUBER JRNL TITL CRYSTAL STRUCTURE OF A NIFS-LIKE PROTEIN FROM THERMOTOGA JRNL TITL 2 MARITIMA: IMPLICATIONS FOR IRON SULPHUR CLUSTER ASSEMBLY. JRNL REF J.MOL.BIOL. V. 297 451 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10715213 JRNL DOI 10.1006/JMBI.2000.3581 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2258073.380 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5215 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 270 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : 3.27000 REMARK 3 B33 (A**2) : -6.55000 REMARK 3 B12 (A**2) : 5.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.140 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.560 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 69.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PLP.CNS.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PLP.CNS.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ECX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 34.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUMSULPHATE, HEPES, DTT, PH 7.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 18K, TEMPERATURE REMARK 280 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.31667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.41000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.31667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 465 ALA A 323 REMARK 465 CYS A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 LYS A 327 REMARK 465 ASP A 328 REMARK 465 GLU A 329 REMARK 465 ARG A 330 REMARK 465 LEU A 331 REMARK 465 ARG A 332 REMARK 465 ASP A 377 REMARK 465 LEU A 378 REMARK 465 THR A 379 REMARK 465 GLY A 380 REMARK 465 ASN A 381 REMARK 465 ASN A 382 REMARK 465 ARG A 383 REMARK 465 ARG A 384 REMARK 465 SER B 321 REMARK 465 SER B 322 REMARK 465 ALA B 323 REMARK 465 CYS B 324 REMARK 465 THR B 325 REMARK 465 SER B 326 REMARK 465 LYS B 327 REMARK 465 ASP B 328 REMARK 465 GLU B 329 REMARK 465 ARG B 330 REMARK 465 LEU B 331 REMARK 465 ASP B 377 REMARK 465 LEU B 378 REMARK 465 THR B 379 REMARK 465 GLY B 380 REMARK 465 ASN B 381 REMARK 465 ASN B 382 REMARK 465 ARG B 383 REMARK 465 ARG B 384 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 2 CZ NH1 REMARK 480 GLU A 19 CD OE2 REMARK 480 GLU A 27 CG OE1 REMARK 480 LYS A 87 CG CD CE REMARK 480 ARG A 88 NH2 REMARK 480 LYS A 107 CE NZ REMARK 480 SER A 110 OG REMARK 480 MET A 111 SD REMARK 480 LYS A 117 CD CE NZ REMARK 480 GLU A 131 CD REMARK 480 LYS A 134 CG CD CE NZ REMARK 480 GLU A 138 CB CG CD OE2 REMARK 480 GLU A 159 CD OE1 REMARK 480 LYS A 166 CG CD CE NZ REMARK 480 LYS A 167 CG CD CE NZ REMARK 480 LYS A 170 CG CD CE REMARK 480 GLU A 171 CD OE1 REMARK 480 LYS A 217 CD CE NZ REMARK 480 GLU A 260 CG CD OE1 OE2 REMARK 480 GLU A 266 OE1 OE2 REMARK 480 ARG A 342 CD CZ NH1 REMARK 480 ARG A 343 CB CG CD NE CZ NH2 REMARK 480 LYS A 367 CD NZ REMARK 480 LEU A 376 O REMARK 480 ARG B 2 CD CZ NH2 REMARK 480 GLU B 19 CG CD REMARK 480 GLU B 27 OE1 REMARK 480 LYS B 87 CG CD CE NZ REMARK 480 MET B 111 SD REMARK 480 LYS B 115 CD CE NZ REMARK 480 GLU B 130 CG CD OE1 OE2 REMARK 480 GLU B 133 CD OE2 REMARK 480 LYS B 134 CG CD CE NZ REMARK 480 GLU B 138 CD OE2 REMARK 480 LYS B 166 CG CD CE NZ REMARK 480 LYS B 170 CG CD CE REMARK 480 GLU B 193 CD REMARK 480 LYS B 217 CD CE NZ REMARK 480 GLU B 256 CD OE1 REMARK 480 GLU B 260 CD OE1 REMARK 480 LYS B 263 CE REMARK 480 LYS B 367 CE REMARK 480 LEU B 376 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 -65.10 -109.85 REMARK 500 CYS A 69 169.22 170.21 REMARK 500 ARG A 88 -65.29 -122.62 REMARK 500 ASN A 169 99.78 -170.75 REMARK 500 LYS A 170 -7.67 -59.78 REMARK 500 ILE A 182 128.00 -36.35 REMARK 500 ILE A 221 153.03 171.13 REMARK 500 ASN A 278 1.08 -69.63 REMARK 500 ILE A 289 56.24 -145.64 REMARK 500 LYS B 28 55.71 -90.75 REMARK 500 PRO B 32 -8.23 -50.60 REMARK 500 CYS B 69 166.09 173.57 REMARK 500 ARG B 88 -45.64 -142.84 REMARK 500 ARG B 90 -2.33 -158.04 REMARK 500 ASN B 169 111.31 -163.46 REMARK 500 ILE B 182 121.15 -36.50 REMARK 500 PRO B 300 -39.17 -32.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLP A 500 REMARK 610 CYS A 502 REMARK 610 PLP B 501 REMARK 610 CYS B 503 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EG5 RELATED DB: PDB REMARK 900 NIFS-LIKE PROTEIN, SUBSTRATE COMPLEX, SELENOMETHIONINE MUTATION DBREF 1ECX A 1 384 UNP Q9X218 Q9X218_THEMA 1 384 DBREF 1ECX B 1 384 UNP Q9X218 Q9X218_THEMA 1 384 SEQADV 1ECX ARG A 332 UNP Q9X218 SER 332 SEE REMARK 999 SEQADV 1ECX ARG B 332 UNP Q9X218 SER 332 SEE REMARK 999 SEQRES 1 A 384 MET ARG VAL TYR PHE ASP ASN ASN ALA THR THR ARG VAL SEQRES 2 A 384 ASP ASP ARG VAL LEU GLU GLU MET ILE VAL PHE TYR ARG SEQRES 3 A 384 GLU LYS TYR GLY ASN PRO ASN SER ALA HIS GLY MET GLY SEQRES 4 A 384 ILE GLU ALA ASN LEU HIS MET GLU LYS ALA ARG GLU LYS SEQRES 5 A 384 VAL ALA LYS VAL LEU GLY VAL SER PRO SER GLU ILE PHE SEQRES 6 A 384 PHE THR SER CYS ALA THR GLU SER ILE ASN TRP ILE LEU SEQRES 7 A 384 LYS THR VAL ALA GLU THR PHE GLU LYS ARG LYS ARG THR SEQRES 8 A 384 ILE ILE THR THR PRO ILE GLU HIS LYS ALA VAL LEU GLU SEQRES 9 A 384 THR MET LYS TYR LEU SER MET LYS GLY PHE LYS VAL LYS SEQRES 10 A 384 TYR VAL PRO VAL ASP SER ARG GLY VAL VAL LYS LEU GLU SEQRES 11 A 384 GLU LEU GLU LYS LEU VAL ASP GLU ASP THR PHE LEU VAL SEQRES 12 A 384 SER ILE MET ALA ALA ASN ASN GLU VAL GLY THR ILE GLN SEQRES 13 A 384 PRO VAL GLU ASP VAL THR ARG ILE VAL LYS LYS LYS ASN SEQRES 14 A 384 LYS GLU THR LEU VAL HIS VAL ASP ALA VAL GLN THR ILE SEQRES 15 A 384 GLY LYS ILE PRO PHE SER LEU GLU LYS LEU GLU VAL ASP SEQRES 16 A 384 TYR ALA SER PHE SER ALA HIS LYS PHE HIS GLY PRO LYS SEQRES 17 A 384 GLY VAL GLY ILE THR TYR ILE ARG LYS GLY VAL PRO ILE SEQRES 18 A 384 ARG PRO LEU ILE HIS GLY GLY GLY GLN GLU ARG GLY LEU SEQRES 19 A 384 ARG SER GLY THR GLN ASN VAL PRO GLY ILE VAL GLY ALA SEQRES 20 A 384 ALA ARG ALA MET GLU ILE ALA VAL GLU GLU LEU SER GLU SEQRES 21 A 384 ALA ALA LYS HIS MET GLU LYS LEU ARG SER LYS LEU VAL SEQRES 22 A 384 SER GLY LEU MET ASN LEU GLY ALA HIS ILE ILE THR PRO SEQRES 23 A 384 LEU GLU ILE SER LEU PRO ASN THR LEU SER VAL SER PHE SEQRES 24 A 384 PRO ASN ILE ARG GLY SER THR LEU GLN ASN LEU LEU SER SEQRES 25 A 384 GLY TYR GLY ILE TYR VAL SER THR SER SER ALA CYS THR SEQRES 26 A 384 SER LYS ASP GLU ARG LEU ARG HIS VAL LEU ASP ALA MET SEQRES 27 A 384 GLY VAL ASP ARG ARG ILE ALA GLN GLY ALA ILE ARG ILE SEQRES 28 A 384 SER LEU CYS LYS TYR ASN THR GLU GLU GLU VAL ASP TYR SEQRES 29 A 384 PHE LEU LYS LYS ILE GLU GLU ILE LEU SER PHE LEU ASP SEQRES 30 A 384 LEU THR GLY ASN ASN ARG ARG SEQRES 1 B 384 MET ARG VAL TYR PHE ASP ASN ASN ALA THR THR ARG VAL SEQRES 2 B 384 ASP ASP ARG VAL LEU GLU GLU MET ILE VAL PHE TYR ARG SEQRES 3 B 384 GLU LYS TYR GLY ASN PRO ASN SER ALA HIS GLY MET GLY SEQRES 4 B 384 ILE GLU ALA ASN LEU HIS MET GLU LYS ALA ARG GLU LYS SEQRES 5 B 384 VAL ALA LYS VAL LEU GLY VAL SER PRO SER GLU ILE PHE SEQRES 6 B 384 PHE THR SER CYS ALA THR GLU SER ILE ASN TRP ILE LEU SEQRES 7 B 384 LYS THR VAL ALA GLU THR PHE GLU LYS ARG LYS ARG THR SEQRES 8 B 384 ILE ILE THR THR PRO ILE GLU HIS LYS ALA VAL LEU GLU SEQRES 9 B 384 THR MET LYS TYR LEU SER MET LYS GLY PHE LYS VAL LYS SEQRES 10 B 384 TYR VAL PRO VAL ASP SER ARG GLY VAL VAL LYS LEU GLU SEQRES 11 B 384 GLU LEU GLU LYS LEU VAL ASP GLU ASP THR PHE LEU VAL SEQRES 12 B 384 SER ILE MET ALA ALA ASN ASN GLU VAL GLY THR ILE GLN SEQRES 13 B 384 PRO VAL GLU ASP VAL THR ARG ILE VAL LYS LYS LYS ASN SEQRES 14 B 384 LYS GLU THR LEU VAL HIS VAL ASP ALA VAL GLN THR ILE SEQRES 15 B 384 GLY LYS ILE PRO PHE SER LEU GLU LYS LEU GLU VAL ASP SEQRES 16 B 384 TYR ALA SER PHE SER ALA HIS LYS PHE HIS GLY PRO LYS SEQRES 17 B 384 GLY VAL GLY ILE THR TYR ILE ARG LYS GLY VAL PRO ILE SEQRES 18 B 384 ARG PRO LEU ILE HIS GLY GLY GLY GLN GLU ARG GLY LEU SEQRES 19 B 384 ARG SER GLY THR GLN ASN VAL PRO GLY ILE VAL GLY ALA SEQRES 20 B 384 ALA ARG ALA MET GLU ILE ALA VAL GLU GLU LEU SER GLU SEQRES 21 B 384 ALA ALA LYS HIS MET GLU LYS LEU ARG SER LYS LEU VAL SEQRES 22 B 384 SER GLY LEU MET ASN LEU GLY ALA HIS ILE ILE THR PRO SEQRES 23 B 384 LEU GLU ILE SER LEU PRO ASN THR LEU SER VAL SER PHE SEQRES 24 B 384 PRO ASN ILE ARG GLY SER THR LEU GLN ASN LEU LEU SER SEQRES 25 B 384 GLY TYR GLY ILE TYR VAL SER THR SER SER ALA CYS THR SEQRES 26 B 384 SER LYS ASP GLU ARG LEU ARG HIS VAL LEU ASP ALA MET SEQRES 27 B 384 GLY VAL ASP ARG ARG ILE ALA GLN GLY ALA ILE ARG ILE SEQRES 28 B 384 SER LEU CYS LYS TYR ASN THR GLU GLU GLU VAL ASP TYR SEQRES 29 B 384 PHE LEU LYS LYS ILE GLU GLU ILE LEU SER PHE LEU ASP SEQRES 30 B 384 LEU THR GLY ASN ASN ARG ARG HET PLP A 500 15 HET CYS A 502 6 HET PLP B 501 15 HET CYS B 503 6 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM CYS CYSTEINE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 CYS 2(C3 H7 N O2 S) FORMUL 7 HOH *179(H2 O) HELIX 1 1 ASP A 14 GLU A 27 1 14 HELIX 2 2 HIS A 36 GLY A 58 1 23 HELIX 3 3 SER A 60 SER A 62 5 3 HELIX 4 4 CYS A 69 THR A 84 1 16 HELIX 5 5 HIS A 99 LYS A 112 1 14 HELIX 6 6 LYS A 128 VAL A 136 1 9 HELIX 7 7 PRO A 157 ASN A 169 1 13 HELIX 8 8 HIS A 202 PHE A 204 5 3 HELIX 9 9 ASN A 240 GLU A 257 1 18 HELIX 10 10 GLU A 257 ASN A 278 1 22 HELIX 11 11 PRO A 286 ILE A 289 5 4 HELIX 12 12 ARG A 303 TYR A 314 1 12 HELIX 13 13 HIS A 333 MET A 338 1 6 HELIX 14 14 ASP A 341 GLN A 346 1 6 HELIX 15 15 THR A 358 LEU A 376 1 19 HELIX 16 16 ASP B 14 GLU B 27 1 14 HELIX 17 17 HIS B 36 GLY B 58 1 23 HELIX 18 18 SER B 60 SER B 62 5 3 HELIX 19 19 CYS B 69 PHE B 85 1 17 HELIX 20 20 HIS B 99 LYS B 112 1 14 HELIX 21 21 LYS B 128 VAL B 136 1 9 HELIX 22 22 PRO B 157 ASN B 169 1 13 HELIX 23 23 HIS B 202 HIS B 205 5 4 HELIX 24 24 GLN B 230 LEU B 234 5 5 HELIX 25 25 ASN B 240 GLU B 257 1 18 HELIX 26 26 GLU B 257 LEU B 279 1 23 HELIX 27 27 PRO B 286 ILE B 289 5 4 HELIX 28 28 ARG B 303 TYR B 314 1 12 HELIX 29 29 ARG B 332 GLY B 339 1 8 HELIX 30 30 ASP B 341 GLY B 347 1 7 HELIX 31 31 THR B 358 LEU B 376 1 19 SHEET 1 A 2 VAL A 3 TYR A 4 0 SHEET 2 A 2 ILE A 316 TYR A 317 1 N TYR A 317 O VAL A 3 SHEET 1 B 7 ILE A 64 THR A 67 0 SHEET 2 B 7 GLY A 211 ILE A 215 -1 O GLY A 211 N THR A 67 SHEET 3 B 7 TYR A 196 SER A 200 -1 O ALA A 197 N TYR A 214 SHEET 4 B 7 LEU A 173 ASP A 177 1 O VAL A 174 N TYR A 196 SHEET 5 B 7 THR A 140 MET A 146 1 O PHE A 141 N LEU A 173 SHEET 6 B 7 THR A 91 THR A 94 1 O THR A 91 N PHE A 141 SHEET 7 B 7 LYS A 115 TYR A 118 1 O LYS A 115 N ILE A 92 SHEET 1 C 3 HIS A 282 ILE A 283 0 SHEET 2 C 3 THR A 294 SER A 298 -1 O SER A 298 N HIS A 282 SHEET 3 C 3 ILE A 349 SER A 352 -1 N ILE A 349 O VAL A 297 SHEET 1 D 2 VAL B 3 TYR B 4 0 SHEET 2 D 2 ILE B 316 TYR B 317 1 N TYR B 317 O VAL B 3 SHEET 1 E 7 ILE B 64 THR B 67 0 SHEET 2 E 7 GLY B 211 ILE B 215 -1 N GLY B 211 O THR B 67 SHEET 3 E 7 TYR B 196 SER B 200 -1 O ALA B 197 N TYR B 214 SHEET 4 E 7 LEU B 173 ASP B 177 1 O VAL B 174 N TYR B 196 SHEET 5 E 7 THR B 140 MET B 146 1 O PHE B 141 N LEU B 173 SHEET 6 E 7 THR B 91 THR B 94 1 O THR B 91 N PHE B 141 SHEET 7 E 7 LYS B 115 TYR B 118 1 O LYS B 115 N ILE B 92 SHEET 1 F 3 HIS B 282 ILE B 283 0 SHEET 2 F 3 THR B 294 SER B 298 -1 N SER B 298 O HIS B 282 SHEET 3 F 3 ALA B 348 SER B 352 -1 N ILE B 349 O VAL B 297 SITE 1 AC1 15 CYS A 69 ALA A 70 THR A 71 HIS A 99 SITE 2 AC1 15 MET A 146 ASN A 150 ASP A 177 VAL A 179 SITE 3 AC1 15 GLN A 180 SER A 200 HIS A 202 LYS A 203 SITE 4 AC1 15 CYS A 502 GLY B 237 THR B 238 SITE 1 AC2 15 GLY A 237 THR A 238 CYS B 69 ALA B 70 SITE 2 AC2 15 THR B 71 HIS B 99 MET B 146 ASN B 150 SITE 3 AC2 15 ASP B 177 VAL B 179 GLN B 180 SER B 200 SITE 4 AC2 15 HIS B 202 LYS B 203 CYS B 503 SITE 1 AC3 5 ASN A 8 HIS A 99 ASN A 150 ARG A 350 SITE 2 AC3 5 PLP A 500 SITE 1 AC4 7 HOH A 566 ASN B 8 ALA B 9 HIS B 99 SITE 2 AC4 7 ASN B 150 ARG B 350 PLP B 501 CRYST1 115.410 115.410 156.950 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008665 0.005003 0.000000 0.00000 SCALE2 0.000000 0.010005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006371 0.00000