PDB Short entry for 1EIK HEADER TRANSFERASE 25-FEB-00 1EIK TITLE SOLUTION STRUCTURE OF RNA POLYMERASE SUBUNIT RPB5 FROM TITLE 2 METHANOBACTERIUM THERMOAUTOTROPHICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SUBUNIT RPB5; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RPB5, RPBH, RNA POLYMERASE SUBUNIT, OCSP, NESG, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, STRUCTURAL GENOMICS, PSI, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.YEE,V.BOOTH,A.DHARAMSI,A.ENGEL,A.M.EDWARDS,C.H.ARROWSMITH,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 16-FEB-22 1EIK 1 REMARK REVDAT 4 24-FEB-09 1EIK 1 VERSN REVDAT 3 25-JAN-05 1EIK 1 AUTHOR KEYWDS REVDAT 2 12-OCT-04 1EIK 1 KEYWDS JRNL REMARK MASTER REVDAT 1 21-JUN-00 1EIK 0 JRNL AUTH A.YEE,V.BOOTH,A.DHARAMSI,A.ENGEL,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF THE RNA POLYMERASE SUBUNIT RPB5 FROM JRNL TITL 2 METHANOBACTERIUM THERMOAUTOTROPHICUM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 6311 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10841538 JRNL DOI 10.1073/PNAS.97.12.6311 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EIK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010610. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : U-15N, 13C; 150 MM NACL, 25 MM REMARK 210 PHOSPHATE, 10% D2O, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 15 H LYS A 58 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 -67.20 -92.59 REMARK 500 1 LEU A 6 55.67 -169.34 REMARK 500 1 LYS A 7 -74.60 64.29 REMARK 500 1 ASP A 30 48.23 86.94 REMARK 500 1 LEU A 36 166.22 -49.19 REMARK 500 1 PRO A 44 -18.43 -48.17 REMARK 500 1 ILE A 49 26.35 45.45 REMARK 500 1 ARG A 53 100.61 -54.74 REMARK 500 1 THR A 65 44.36 81.25 REMARK 500 2 GLU A 4 -162.65 -100.81 REMARK 500 2 LYS A 7 36.74 -177.42 REMARK 500 2 HIS A 8 -164.96 -175.46 REMARK 500 2 LEU A 10 160.11 -49.93 REMARK 500 2 ASP A 30 44.98 84.95 REMARK 500 2 PRO A 44 -16.98 -48.48 REMARK 500 2 ILE A 49 25.31 45.28 REMARK 500 2 ARG A 53 109.24 -57.35 REMARK 500 2 THR A 65 53.82 82.47 REMARK 500 3 LYS A 2 67.46 -101.86 REMARK 500 3 GLU A 4 -162.41 64.32 REMARK 500 3 ILE A 5 -86.31 -72.09 REMARK 500 3 LEU A 6 106.40 53.29 REMARK 500 3 LYS A 7 162.23 60.66 REMARK 500 3 LEU A 10 -62.50 -102.11 REMARK 500 3 PRO A 12 -177.32 -44.43 REMARK 500 3 ASP A 30 48.12 82.96 REMARK 500 3 PRO A 44 -18.41 -49.02 REMARK 500 3 ILE A 49 25.73 45.50 REMARK 500 3 ARG A 53 100.91 -54.81 REMARK 500 3 THR A 65 45.93 81.46 REMARK 500 3 ALA A 66 27.52 44.41 REMARK 500 4 LYS A 2 -70.03 -111.52 REMARK 500 4 ARG A 3 73.09 56.03 REMARK 500 4 LYS A 7 -158.41 -175.18 REMARK 500 4 HIS A 8 77.49 -63.40 REMARK 500 4 LEU A 10 -84.43 58.17 REMARK 500 4 PRO A 12 -179.13 -65.12 REMARK 500 4 ASP A 30 44.39 83.91 REMARK 500 4 PRO A 44 -19.10 -48.66 REMARK 500 4 ILE A 49 27.02 43.75 REMARK 500 4 ARG A 53 98.08 -54.79 REMARK 500 4 THR A 65 -72.36 85.55 REMARK 500 4 ALA A 66 57.44 174.39 REMARK 500 5 LEU A 6 93.20 -163.25 REMARK 500 5 LYS A 7 -42.03 179.87 REMARK 500 5 LEU A 10 128.99 65.21 REMARK 500 5 ASP A 30 42.51 83.78 REMARK 500 5 LEU A 36 156.14 -47.61 REMARK 500 5 PRO A 44 -19.52 -47.55 REMARK 500 5 ILE A 49 27.58 43.93 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TT9 RELATED DB: TARGETDB DBREF 1EIK A 1 77 UNP O27122 RPOH_METTH 1 77 SEQRES 1 A 77 MET LYS ARG GLU ILE LEU LYS HIS GLN LEU VAL PRO GLU SEQRES 2 A 77 HIS VAL ILE LEU ASN GLU SER GLU ALA LYS ARG VAL LEU SEQRES 3 A 77 LYS GLU LEU ASP ALA HIS PRO GLU GLN LEU PRO LYS ILE SEQRES 4 A 77 LYS THR THR ASP PRO VAL ALA LYS ALA ILE GLY ALA LYS SEQRES 5 A 77 ARG GLY ASP ILE VAL LYS ILE ILE ARG LYS SER PRO THR SEQRES 6 A 77 ALA GLU GLU PHE VAL THR TYR ARG LEU VAL GLN ASP HELIX 1 1 ASN A 18 LEU A 29 1 12 HELIX 2 2 ASP A 43 ALA A 48 1 6 HELIX 3 3 ILE A 49 ALA A 51 5 3 SHEET 1 A 3 GLU A 13 LEU A 17 0 SHEET 2 A 3 ILE A 56 SER A 63 -1 O ILE A 56 N LEU A 17 SHEET 3 A 3 GLU A 67 LEU A 74 -1 O GLU A 67 N SER A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000