PDB Short entry for 1EM1 HEADER OXIDOREDUCTASE 14-MAR-00 1EM1 TITLE X-RAY CRYSTAL STRUCTURE FOR HUMAN MANGANESE SUPEROXIDE DISMUTASE, TITLE 2 Q143A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMNSOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGANELLE: MITOCHONDRIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SODASODB; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PHMNSOD4 (ATCC#59947) KEYWDS ALPHA-BETA PROTEIN, METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.LEVEQUE,M.E.STROUPE,J.R.LEPOCK,D.E.CABELLI,J.A.TAINER,H.S.NICK, AUTHOR 2 D.N.SILVERMAN REVDAT 6 03-NOV-21 1EM1 1 REMARK SEQADV LINK REVDAT 5 04-OCT-17 1EM1 1 REMARK REVDAT 4 13-JUL-11 1EM1 1 VERSN REVDAT 3 24-FEB-09 1EM1 1 VERSN REVDAT 2 01-SEP-00 1EM1 1 JRNL REVDAT 1 24-MAR-00 1EM1 0 JRNL AUTH V.J.LEVEQUE,M.E.STROUPE,J.R.LEPOCK,D.E.CABELLI,J.A.TAINER, JRNL AUTH 2 H.S.NICK,D.N.SILVERMAN JRNL TITL MULTIPLE REPLACEMENTS OF GLUTAMINE 143 IN HUMAN MANGANESE JRNL TITL 2 SUPEROXIDE DISMUTASE: EFFECTS ON STRUCTURE, STABILITY, AND JRNL TITL 3 CATALYSIS. JRNL REF BIOCHEMISTRY V. 39 7131 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10852710 JRNL DOI 10.1021/BI9929958 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.E.BORGSTAHL,H.E.PARGE,M.J.HICKEY,W.F.BEYER JUNIOR, REMARK 1 AUTH 2 R.A.HALLEWELL,J.A.TAINER REMARK 1 TITL THE STRUCTURE OF HUMAN MITOCHONDRIAL MANGANESE SUPEROXIDE REMARK 1 TITL 2 DISMUTASE REVEALS A NOVEL TETRAMERIC INTERFACE OF TWO REMARK 1 TITL 3 4-HELIX BUNDLES REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 71 107 1993 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/0092-8674(92)90270-M REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3778026.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 89153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3625 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 390 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.26000 REMARK 3 B22 (A**2) : 4.26000 REMARK 3 B33 (A**2) : -8.52000 REMARK 3 B12 (A**2) : 5.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.470 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.190 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.330 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 52.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ALL.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ALL2.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, IMIDAZOLE/MALATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.54733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.09467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.82100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 201.36833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.27367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.54733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 161.09467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 201.36833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.82100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.27367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.82150 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 68.97286 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 201.36833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 691 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 92 O HOH A 613 2.04 REMARK 500 OH TYR B 34 O HOH B 695 2.06 REMARK 500 O ILE B 137 O HOH B 725 2.09 REMARK 500 NZ LYS B 1 O HOH B 722 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 709 O HOH A 709 10665 1.25 REMARK 500 OD2 ASP A 10 OD1 ASN B 84 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -61.18 -108.34 REMARK 500 ASN A 142 -121.11 45.66 REMARK 500 TYR A 165 -17.77 -153.34 REMARK 500 LYS A 170 -137.63 55.18 REMARK 500 ASN B 142 -123.77 45.39 REMARK 500 TYR B 165 -18.11 -152.66 REMARK 500 LYS B 170 -131.98 56.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 600 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 88.2 REMARK 620 3 ASP A 159 OD1 86.5 110.8 REMARK 620 4 HIS A 163 NE2 90.0 134.1 114.9 REMARK 620 5 HOH A 763 O 170.7 93.6 84.3 95.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 74 NE2 89.5 REMARK 620 3 ASP B 159 OD1 85.3 111.3 REMARK 620 4 HIS B 163 NE2 91.4 132.5 116.1 REMARK 620 5 HOH B 731 O 168.9 88.8 85.2 97.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 601 DBREF 1EM1 A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1EM1 B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 1EM1 ALA A 143 UNP P04179 GLN 167 ENGINEERED MUTATION SEQADV 1EM1 ALA B 143 UNP P04179 GLN 167 ENGINEERED MUTATION SEQRES 1 A 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 A 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 A 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 A 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 A 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 A 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 A 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 A 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 A 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 A 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 A 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN ALA SEQRES 12 A 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 A 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN TYR SEQRES 14 A 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 A 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 A 198 CYS LYS LYS SEQRES 1 B 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 B 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 B 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 B 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 B 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 B 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 B 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 B 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 B 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 B 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 B 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN ALA SEQRES 12 B 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 B 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN TYR SEQRES 14 B 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 B 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 B 198 CYS LYS LYS HET SO4 A 501 5 HET MN A 600 1 HET SO4 B 500 5 HET MN B 601 1 HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *293(H2 O) HELIX 1 1 ASN A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 GLY A 52 1 24 HELIX 3 3 ASP A 53 LEU A 60 1 8 HELIX 4 4 LEU A 60 ASN A 80 1 21 HELIX 5 5 LYS A 90 GLY A 102 1 13 HELIX 6 6 SER A 103 VAL A 118 1 16 HELIX 7 7 PRO A 145 GLY A 151 1 7 HELIX 8 8 TRP A 161 ALA A 164 5 4 HELIX 9 9 TYR A 165 LYS A 170 1 6 HELIX 10 10 VAL A 172 TRP A 181 1 10 HELIX 11 11 ASN A 185 CYS A 196 1 12 HELIX 12 12 ASN B 19 LYS B 29 1 11 HELIX 13 13 LYS B 29 GLY B 52 1 24 HELIX 14 14 ASP B 53 LEU B 60 1 8 HELIX 15 15 LEU B 60 ASN B 80 1 21 HELIX 16 16 LYS B 90 GLY B 102 1 13 HELIX 17 17 SER B 103 GLY B 117 1 15 HELIX 18 18 PRO B 145 GLY B 151 1 7 HELIX 19 19 TRP B 161 ALA B 164 5 4 HELIX 20 20 TYR B 165 LYS B 170 1 6 HELIX 21 21 VAL B 172 TRP B 181 1 10 HELIX 22 22 ASN B 185 LYS B 197 1 13 SHEET 1 A 3 HIS A 134 PRO A 141 0 SHEET 2 A 3 GLY A 122 ASN A 129 -1 O TRP A 123 N CYS A 140 SHEET 3 A 3 ILE A 153 ASP A 159 -1 N ILE A 153 O PHE A 128 SHEET 1 B 3 HIS B 134 PRO B 141 0 SHEET 2 B 3 GLY B 122 ASN B 129 -1 N TRP B 123 O CYS B 140 SHEET 3 B 3 ILE B 153 ASP B 159 -1 N ILE B 153 O PHE B 128 LINK NE2 HIS A 26 MN MN A 600 1555 1555 2.13 LINK NE2 HIS A 74 MN MN A 600 1555 1555 2.11 LINK OD1 ASP A 159 MN MN A 600 1555 1555 2.13 LINK NE2 HIS A 163 MN MN A 600 1555 1555 2.09 LINK MN MN A 600 O HOH A 763 1555 1555 2.20 LINK NE2 HIS B 26 MN MN B 601 1555 1555 2.23 LINK NE2 HIS B 74 MN MN B 601 1555 1555 2.28 LINK OD1 ASP B 159 MN MN B 601 1555 1555 2.04 LINK NE2 HIS B 163 MN MN B 601 1555 1555 2.22 LINK MN MN B 601 O HOH B 731 1555 1555 2.29 CISPEP 1 GLU A 15 PRO A 16 0 -0.56 CISPEP 2 GLU B 15 PRO B 16 0 -0.62 SITE 1 AC1 5 LYS A 178 HIS B 2 SER B 3 HIS B 71 SITE 2 AC1 5 HOH B 703 SITE 1 AC2 5 LYS A 1 HIS A 2 SER A 3 HIS A 71 SITE 2 AC2 5 HOH A 708 SITE 1 AC3 5 HIS A 26 HIS A 74 ASP A 159 HIS A 163 SITE 2 AC3 5 HOH A 763 SITE 1 AC4 5 HIS B 26 HIS B 74 ASP B 159 HIS B 163 SITE 2 AC4 5 HOH B 731 CRYST1 79.643 79.643 241.642 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012556 0.007249 0.000000 0.00000 SCALE2 0.000000 0.014498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004138 0.00000