PDB Short entry for 1EMZ HEADER VIRAL PROTEIN 20-MAR-00 1EMZ TITLE SOLUTION STRUCTURE OF FRAGMENT (350-370) OF THE TRANSMEMBRANE DOMAIN TITLE 2 OF HEPATITIS C ENVELOPE GLYCOPROTEIN E1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN E1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN (RESIDUES 350-370); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THIS PEPTIDE IS NATURALLY FOUND IN HEPATITIS C VIRUS. KEYWDS TRANSMEMBRANE DOMAIN, ENVELOPE PROTEIN E1, HEPATITIS C VIRUS, VIRAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR AUTHOR A.OP DE BEECK,R.MONTSERRET,S.DUVET,L.COCQUEREL,R.CACAN,B.BARBEROT, AUTHOR 2 M.LE MAIRE,F.PENIN,J.DUBUISSON REVDAT 4 16-FEB-22 1EMZ 1 REMARK REVDAT 3 24-FEB-09 1EMZ 1 VERSN REVDAT 2 29-NOV-00 1EMZ 1 JRNL REVDAT 1 05-APR-00 1EMZ 0 JRNL AUTH A.OP DE BEECK,R.MONTSERRET,S.DUVET,L.COCQUEREL,R.CACAN, JRNL AUTH 2 B.BARBEROT,M.LE MAIRE,F.PENIN,J.DUBUISSON JRNL TITL THE TRANSMEMBRANE DOMAINS OF HEPATITIS C VIRUS ENVELOPE JRNL TITL 2 GLYCOPROTEINS E1 AND E2 PLAY A MAJOR ROLE IN JRNL TITL 3 HETERODIMERIZATION. JRNL REF J.BIOL.CHEM. V. 275 31428 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10807921 JRNL DOI 10.1074/JBC.M003003200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1, X-PLOR 3.1 REMARK 3 AUTHORS : VARIAN INC. (VNMR), BRUNGER A.T. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON 337 NOE REMARK 3 DERIVED DISTANCE CONSTRAINTS REMARK 4 REMARK 4 1EMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010735. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4 MM E1(350-370), 50% H2O, 50% REMARK 210 D2 TRIFLUOROETHANOL (V/V) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMIC, REMARK 210 ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SODIUM 2,2 DIMETHYL-2-SILAPENTANE-5-SULFONATE (DSS) IN THE REMARK 210 INTERNAL NMR REFERENCE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1EMZ A 1 21 UNP Q9Q3N3 Q9Q3N3_9HEPC 350 370 SEQRES 1 A 21 GLY ALA HIS TRP GLY VAL LEU ALA GLY ILE ALA TYR PHE SEQRES 2 A 21 SER MET VAL GLY ASN TRP ALA LYS HELIX 1 1 HIS A 3 LYS A 21 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000