PDB Short entry for 1EOB HEADER OXIDOREDUCTASE 22-MAR-00 1EOB TITLE CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4- TITLE 2 DIOXYGENASE IN COMPLEX WITH 3,4-DIHYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 EC: 1.13.11.3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: CLONED AND OVEREXPRESSED IN E.COLI; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 10 ORGANISM_TAXID: 62977; SOURCE 11 STRAIN: ADP1; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-SANDWICH, MIXED ALPHA/BETA STRUCTURE, DIOXYGENASE, KEYWDS 2 BIODEGRADATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,D.A.D'ARGENIO,L.N.ORNSTON,D.H.OHLENDORF REVDAT 6 07-FEB-24 1EOB 1 REMARK LINK REVDAT 5 04-OCT-17 1EOB 1 REMARK REVDAT 4 13-JUL-11 1EOB 1 VERSN REVDAT 3 24-FEB-09 1EOB 1 VERSN REVDAT 2 01-APR-03 1EOB 1 JRNL REVDAT 1 09-AUG-00 1EOB 0 JRNL AUTH M.W.VETTING,D.A.D'ARGENIO,L.N.ORNSTON,D.H.OHLENDORF JRNL TITL STRUCTURE OF ACINETOBACTER STRAIN ADP1 PROTOCATECHUATE 3, JRNL TITL 2 4-DIOXYGENASE AT 2.2 A RESOLUTION: IMPLICATIONS FOR THE JRNL TITL 3 MECHANISM OF AN INTRADIOL DIOXYGENASE. JRNL REF BIOCHEMISTRY V. 39 7943 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10891075 JRNL DOI 10.1021/BI000151E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.W.VETTING,C.A.EARHART,D.H.OHLENDORF REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER REMARK 1 TITL 3 CALCOACETICUS REMARK 1 REF J.MOL.BIOL. V. 236 372 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1142 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.A.D'ARGENIO,M.W.VETTING,D.H.OHLENDORF,L.N.ORNSTON REMARK 1 TITL SUBSTITUTION, INSERTION, DELETION, SUPPRESSION, AND ALTERED REMARK 1 TITL 2 SUBSTRATE SPECIFICITY IN FUNCTIONAL PROTOCATECHUATE REMARK 1 TITL 3 3,4-DIOXYGENASES. REMARK 1 REF J.BACTERIOL. V. 181 6478 1999 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.M.ORVILLE,J.D.LIPSCOMB,D.H.OHLENDORF REMARK 1 TITL CRYSTAL STRUCTURES OF SUBSTRATE AND SUBSTRATE ANALOG REMARK 1 TITL 2 COMPLEXES OF PROTOCATECHUATE 3,4-DIOXYGENASE: ENDOGENOUS REMARK 1 TITL 3 FE3+ LIGAND DISPLACEMENT IN RESPONSE TO SUBSTRATE BINDING. REMARK 1 REF BIOCHEMISTRY V. 36 10052 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI970469F REMARK 1 REFERENCE 4 REMARK 1 AUTH D.H.OHLENDORF,A.M.ORVILLE,J.D.LIPSCOMB REMARK 1 TITL STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE FROM REMARK 1 TITL 2 PSEUDOMONAS AERUGINOSA AT 2.15 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 244 586 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1754 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 22167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 5% OF REFLECTIONS REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.460 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25259 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL PH 7.0, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 280 CRYSTALS WERE SOAKED IN 30MM PCA AT PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 72.20000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 72.20000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.20000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 72.20000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.20000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 72.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER (AB) X 12 REMARK 300 CONSTRUCTED FROM THE 23(T) SYMMETRY OF THE SPACE GROUP ACTING ON REMARK 300 THE A AND B SUBUNITS IN THE ASSYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 148600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 171270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -725.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ASN A -2 REMARK 465 GLY A -1 REMARK 465 TRP A 0 REMARK 465 ASN A 1 REMARK 465 PHE A 2 REMARK 465 GLN A 3 REMARK 465 MET B 300 REMARK 465 SER B 301 REMARK 465 GLN B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 892 O HOH B 892 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 451 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -169.88 -77.19 REMARK 500 ASN A 88E 50.08 -116.86 REMARK 500 ALA A 132 165.20 179.10 REMARK 500 ARG A 177 88.01 -65.22 REMARK 500 ASP A 178 -101.59 79.11 REMARK 500 LYS B 369 -75.22 -105.08 REMARK 500 ASN B 451 -79.22 -107.92 REMARK 500 ASN B 454 47.15 -108.01 REMARK 500 ALA B 467 -129.18 -112.90 REMARK 500 SER B 476 -163.34 -160.41 REMARK 500 ASP B 509 70.45 -115.44 REMARK 500 ASP B 517 -77.26 -141.59 REMARK 500 PHE B 535 -131.98 -126.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 600 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 408 OH REMARK 620 2 HIS B 460 NE2 91.5 REMARK 620 3 HIS B 462 NE2 96.9 90.3 REMARK 620 4 DHB B 999 O3 169.4 98.6 80.0 REMARK 620 5 DHB B 999 O4 99.8 100.6 159.7 81.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHB B 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EO2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4- REMARK 900 DIOXYGENASE AT PH 8.5 REMARK 900 RELATED ID: 1EO9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4- REMARK 900 DIOXYGENASE AT PH <7.0 REMARK 900 RELATED ID: 1EOA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4- REMARK 900 DIOXYGENASE IN COMPLEX WITH CYANIDE REMARK 900 RELATED ID: 1EOC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACINETOBACTER SP. ADP1 PROTOCATECHUATE 3,4- REMARK 900 DIOXYGENASE IN COMPLEX WITH 4-NITROCATECHOL DBREF 1EOB A -3 200 UNP P20371 PCXA_ACIAD 1 209 DBREF 1EOB B 300 540 UNP P20372 PCXB_ACIAD 1 241 SEQADV 1EOB GLY A 60 UNP P20371 SER 64 SEE REMARK 999 SEQRES 1 A 209 MET ASN GLY TRP ASN PHE GLN GLU LEU LYS GLU THR PRO SEQRES 2 A 209 SER GLN THR GLY GLY PRO TYR VAL HIS ILE GLY LEU LEU SEQRES 3 A 209 PRO LYS GLN ALA ASN ILE GLU VAL PHE GLU HIS ASN LEU SEQRES 4 A 209 ASP ASN ASN LEU VAL GLN ASP ASN THR GLN GLY GLN ARG SEQRES 5 A 209 ILE ARG LEU GLU GLY GLN VAL PHE ASP GLY LEU GLY LEU SEQRES 6 A 209 PRO LEU ARG ASP VAL LEU ILE GLU ILE TRP GLN ALA ASP SEQRES 7 A 209 THR ASN GLY VAL TYR PRO SER GLN ALA ASP THR GLN GLY SEQRES 8 A 209 LYS GLN VAL ASP PRO ASN PHE LEU GLY TRP GLY ARG THR SEQRES 9 A 209 GLY ALA ASP PHE GLY THR GLY PHE TRP SER PHE ASN THR SEQRES 10 A 209 ILE LYS PRO GLY ALA VAL PRO GLY ARG LYS GLY SER THR SEQRES 11 A 209 GLN ALA PRO HIS ILE SER LEU ILE ILE PHE ALA ARG GLY SEQRES 12 A 209 ILE ASN ILE GLY LEU HIS THR ARG VAL TYR PHE ASP ASP SEQRES 13 A 209 GLU ALA GLU ALA ASN ALA LYS ASP PRO VAL LEU ASN SER SEQRES 14 A 209 ILE GLU TRP ALA THR ARG ARG GLN THR LEU VAL ALA LYS SEQRES 15 A 209 ARG GLU GLU ARG ASP GLY GLU VAL VAL TYR ARG PHE ASP SEQRES 16 A 209 ILE ARG ILE GLN GLY GLU ASN GLU THR VAL PHE PHE ASP SEQRES 17 A 209 ILE SEQRES 1 B 241 MET SER GLN ILE ILE TRP GLY ALA TYR ALA GLN ARG ASN SEQRES 2 B 241 THR GLU ASP HIS PRO PRO ALA TYR ALA PRO GLY TYR LYS SEQRES 3 B 241 THR SER VAL LEU ARG SER PRO LYS ASN ALA LEU ILE SER SEQRES 4 B 241 ILE ALA GLU THR LEU SER GLU VAL THR ALA PRO HIS PHE SEQRES 5 B 241 SER ALA ASP LYS PHE GLY PRO LYS ASP ASN ASP LEU ILE SEQRES 6 B 241 LEU ASN TYR ALA LYS ASP GLY LEU PRO ILE GLY GLU ARG SEQRES 7 B 241 VAL ILE VAL HIS GLY TYR VAL ARG ASP GLN PHE GLY ARG SEQRES 8 B 241 PRO VAL LYS ASN ALA LEU VAL GLU VAL TRP GLN ALA ASN SEQRES 9 B 241 ALA SER GLY ARG TYR ARG HIS PRO ASN ASP GLN TYR ILE SEQRES 10 B 241 GLY ALA MET ASP PRO ASN PHE GLY GLY CYS GLY ARG MET SEQRES 11 B 241 LEU THR ASP ASP ASN GLY TYR TYR VAL PHE ARG THR ILE SEQRES 12 B 241 LYS PRO GLY PRO TYR PRO TRP ARG ASN ARG ILE ASN GLU SEQRES 13 B 241 TRP ARG PRO ALA HIS ILE HIS PHE SER LEU ILE ALA ASP SEQRES 14 B 241 GLY TRP ALA GLN ARG LEU ILE SER GLN PHE TYR PHE GLU SEQRES 15 B 241 GLY ASP THR LEU ILE ASP SER CYS PRO ILE LEU LYS THR SEQRES 16 B 241 ILE PRO SER GLU GLN GLN ARG ARG ALA LEU ILE ALA LEU SEQRES 17 B 241 GLU ASP LYS SER ASN PHE ILE GLU ALA ASP SER ARG CYS SEQRES 18 B 241 TYR ARG PHE ASP ILE THR LEU ARG GLY ARG ARG ALA THR SEQRES 19 B 241 TYR PHE GLU ASN ASP LEU THR HET FE B 600 1 HET DHB B 999 11 HETNAM FE FE (III) ION HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID FORMUL 3 FE FE 3+ FORMUL 4 DHB C7 H6 O4 FORMUL 5 HOH *192(H2 O) HELIX 1 1 VAL A 17 LEU A 22 1 6 HELIX 2 2 PRO A 23 ASN A 27 5 5 HELIX 3 3 GLU A 148 LYS A 154 1 7 HELIX 4 4 ASP A 155 SER A 160 1 6 HELIX 5 5 TRP A 163 THR A 169 5 7 HELIX 6 6 ASN B 312 HIS B 316 5 5 HELIX 7 7 TYR B 324 VAL B 328 5 5 HELIX 8 8 THR B 342 THR B 347 1 6 HELIX 9 9 SER B 352 PHE B 356 5 5 HELIX 10 10 GLY B 469 ARG B 473 5 5 HELIX 11 11 ASP B 483 CYS B 489 5 7 HELIX 12 12 ILE B 491 ILE B 495 5 5 HELIX 13 13 SER B 497 ALA B 503 1 7 HELIX 14 14 LYS B 510 PHE B 513 5 4 SHEET 1 A 8 TRP A 92 GLY A 96 0 SHEET 2 A 8 LEU A 67 TRP A 71 -1 N ILE A 68 O THR A 95 SHEET 3 A 8 ILE A 126 PHE A 131 -1 N SER A 127 O TRP A 71 SHEET 4 A 8 LEU A 139 PHE A 145 -1 N LEU A 139 O ILE A 130 SHEET 5 A 8 VAL A 171 ARG A 177 1 N ALA A 172 O TYR A 144 SHEET 6 A 8 GLU A 180 ARG A 184 -1 N GLU A 180 O ARG A 177 SHEET 7 A 8 ARG A 48 GLY A 53 1 O ARG A 50 N TYR A 183 SHEET 8 A 8 TRP A 104 ILE A 109 -1 N TRP A 104 O GLY A 53 SHEET 1 B 2 VAL A 55 PHE A 56 0 SHEET 2 B 2 ILE A 187 ARG A 188 1 O ILE A 187 N PHE A 56 SHEET 1 C 2 PHE A 198 ASP A 199 0 SHEET 2 C 2 ILE B 337 SER B 338 1 O ILE B 337 N ASP A 199 SHEET 1 D 2 ILE B 304 TYR B 308 0 SHEET 2 D 2 ARG B 530 THR B 533 -1 O ARG B 531 N GLY B 306 SHEET 1 E 8 TYR B 436 ILE B 442 0 SHEET 2 E 8 ARG B 377 ASP B 386 -1 N VAL B 378 O THR B 441 SHEET 3 E 8 ARG B 519 ARG B 522 1 O ARG B 519 N ILE B 379 SHEET 4 E 8 ILE B 505 GLU B 508 -1 O LEU B 507 N ARG B 522 SHEET 5 E 8 LEU B 474 PHE B 480 1 O TYR B 479 N ALA B 506 SHEET 6 E 8 HIS B 460 ILE B 466 -1 O ILE B 461 N PHE B 478 SHEET 7 E 8 LEU B 396 TRP B 400 -1 N LEU B 396 O ILE B 466 SHEET 8 E 8 CYS B 426 LEU B 430 -1 O GLY B 427 N VAL B 399 SHEET 1 F 3 TYR B 436 ILE B 442 0 SHEET 2 F 3 ARG B 377 ASP B 386 -1 N VAL B 378 O THR B 441 SHEET 3 F 3 ILE B 525 LEU B 527 1 N ILE B 525 O TYR B 383 SHEET 1 G 2 TYR B 447 TRP B 449 0 SHEET 2 G 2 GLU B 455 ARG B 457 -1 O GLU B 455 N TRP B 449 LINK OH TYR B 408 FE FE B 600 1555 1555 1.92 LINK NE2 HIS B 460 FE FE B 600 1555 1555 2.18 LINK NE2 HIS B 462 FE FE B 600 1555 1555 2.16 LINK FE FE B 600 O3 DHB B 999 1555 1555 2.13 LINK FE FE B 600 O4 DHB B 999 1555 1555 2.08 SITE 1 AC1 4 TYR B 408 HIS B 460 HIS B 462 DHB B 999 SITE 1 AC2 14 THR A 12 GLY A 14 PRO A 15 ARG A 133 SITE 2 AC2 14 TYR B 324 TYR B 408 TYR B 447 TRP B 449 SITE 3 AC2 14 ARG B 457 HIS B 460 HIS B 462 FE B 600 SITE 4 AC2 14 HOH B 827 HOH B 883 CRYST1 144.400 144.400 144.400 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006925 0.00000