PDB Short entry for 1F2I HEADER TRANSCRIPTION/DNA 25-MAY-00 1F2I TITLE COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3'; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12; COMPND 7 CHAIN: G, H, I, J, K, L; COMPND 8 FRAGMENT: ZIF12 CONTAINS ZINC FINGERS 1 AND 2 OF ZIF268; COMPND 9 SYNONYM: EARLY GROWTH RESPONSE 1, EGR-1, KROX-24 PROTEIN, ZIF268; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 5 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 GENE: GENE FOR ZIF12; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21D KEYWDS ZINC FINGER, DIMER, PROTEIN-DNA COMPLEX, COOPERATIVITY, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.S.WANG,R.A.GRANT,C.O.PABO REVDAT 3 07-FEB-24 1F2I 1 REMARK LINK REVDAT 2 24-FEB-09 1F2I 1 VERSN REVDAT 1 14-SEP-01 1F2I 0 JRNL AUTH B.S.WANG,R.A.GRANT,C.O.PABO JRNL TITL SELECTED PEPTIDE EXTENSION CONTACTS HYDROPHOBIC PATCH ON JRNL TITL 2 NEIGHBORING ZINC FINGER AND MEDIATES DIMERIZATION ON DNA. JRNL REF NAT.STRUCT.BIOL. V. 8 589 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11427887 JRNL DOI 10.1038/89617 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.S.WANG,C.O.PABO REMARK 1 TITL DIMERIZATION OF ZINC FINGERS MEDIATED BY PEPTIDES EVOLVED IN REMARK 1 TITL 2 VITRO FROM RANDOM SEQUENCES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 9568 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.96.17.9568 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.6 REMARK 3 NUMBER OF REFLECTIONS : 38060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3849 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4274 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 528 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 1704 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.810 ; 0.750 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.500 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.630 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.030 ; 1.250 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000011163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-99; 16-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 125; 125 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; NSLS REMARK 200 BEAMLINE : NULL; X4A REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.0093 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++; ADSC QUANTUM REMARK 200 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NACL, MGCL2, MES, PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP AT 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.33333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM CHAINS REMARK 300 A, B, G, AND H REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 1086 REMARK 465 GLU G 1087 REMARK 465 PRO G 1088 REMARK 465 HIS G 1089 REMARK 465 PRO G 1090 REMARK 465 MET G 1091 REMARK 465 ASN G 1092 REMARK 465 MET H 2086 REMARK 465 GLU H 2087 REMARK 465 PRO H 2088 REMARK 465 HIS H 2089 REMARK 465 PRO H 2090 REMARK 465 MET H 2091 REMARK 465 ASN H 2092 REMARK 465 MET I 3086 REMARK 465 GLU I 3087 REMARK 465 PRO I 3088 REMARK 465 HIS I 3089 REMARK 465 PRO I 3090 REMARK 465 MET I 3091 REMARK 465 ASN I 3092 REMARK 465 MET J 4086 REMARK 465 GLU J 4087 REMARK 465 PRO J 4088 REMARK 465 HIS J 4089 REMARK 465 PRO J 4090 REMARK 465 MET J 4091 REMARK 465 ASN J 4092 REMARK 465 MET K 5086 REMARK 465 GLU K 5087 REMARK 465 PRO K 5088 REMARK 465 HIS K 5089 REMARK 465 PRO K 5090 REMARK 465 MET K 5091 REMARK 465 ASN K 5092 REMARK 465 ASN K 5093 REMARK 465 LEU K 5094 REMARK 465 LEU K 5095 REMARK 465 MET L 6086 REMARK 465 GLU L 6087 REMARK 465 PRO L 6088 REMARK 465 HIS L 6089 REMARK 465 PRO L 6090 REMARK 465 MET L 6091 REMARK 465 ASN L 6092 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C3009 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE G1139 -67.78 -94.14 REMARK 500 LEU I3094 2.79 -65.72 REMARK 500 PRO I3100 100.18 -44.65 REMARK 500 VAL J4099 112.54 -34.41 REMARK 500 VAL J4109 122.77 -36.57 REMARK 500 LYS K5133 59.50 -158.03 REMARK 500 ARG K5138 4.97 -69.22 REMARK 500 ILE K5139 -82.80 -119.49 REMARK 500 HIS K5157 -77.88 -91.20 REMARK 500 ASP L6113 70.47 -104.66 REMARK 500 GLN L6132 155.18 -45.45 REMARK 500 LYS L6133 73.35 -154.34 REMARK 500 MET L6141 3.77 83.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C3009 0.07 SIDE CHAIN REMARK 500 DT D4002 0.06 SIDE CHAIN REMARK 500 DG E5003 0.05 SIDE CHAIN REMARK 500 DG E5009 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G1107 SG REMARK 620 2 CYS G1112 SG 115.3 REMARK 620 3 HIS G1125 NE2 108.8 115.9 REMARK 620 4 HIS G1129 NE2 98.2 125.7 89.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G1137 SG REMARK 620 2 CYS G1140 SG 117.5 REMARK 620 3 HIS G1153 NE2 117.1 107.0 REMARK 620 4 HIS G1157 NE2 95.9 113.6 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H2201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H2107 SG REMARK 620 2 CYS H2112 SG 113.5 REMARK 620 3 HIS H2125 NE2 115.5 105.1 REMARK 620 4 HIS H2129 NE2 96.3 117.6 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H2202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H2137 SG REMARK 620 2 CYS H2140 SG 103.7 REMARK 620 3 HIS H2153 NE2 103.6 99.5 REMARK 620 4 HIS H2157 NE2 103.0 135.1 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN I3201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS I3107 SG REMARK 620 2 CYS I3112 SG 119.2 REMARK 620 3 HIS I3125 NE2 112.9 108.1 REMARK 620 4 HIS I3129 NE2 100.0 113.4 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN I3202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS I3137 SG REMARK 620 2 CYS I3140 SG 116.5 REMARK 620 3 HIS I3153 NE2 100.3 105.9 REMARK 620 4 HIS I3157 NE2 101.7 127.7 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN J4201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS J4107 SG REMARK 620 2 CYS J4112 SG 114.6 REMARK 620 3 HIS J4125 NE2 109.7 107.5 REMARK 620 4 HIS J4129 NE2 111.0 120.3 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN J4202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS J4137 SG REMARK 620 2 CYS J4140 SG 110.6 REMARK 620 3 HIS J4153 NE2 111.1 105.7 REMARK 620 4 HIS J4157 NE2 104.7 125.9 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K5201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K5107 SG REMARK 620 2 CYS K5112 SG 108.0 REMARK 620 3 HIS K5125 NE2 109.9 104.6 REMARK 620 4 HIS K5129 NE2 105.7 131.7 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K5202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K5140 SG REMARK 620 2 HIS K5153 NE2 116.1 REMARK 620 3 HIS K5157 NE2 128.4 107.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L6201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L6107 SG REMARK 620 2 CYS L6112 SG 131.8 REMARK 620 3 HIS L6125 NE2 130.1 94.6 REMARK 620 4 HIS L6129 NE2 88.1 101.2 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L6202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L6137 SG REMARK 620 2 CYS L6140 SG 108.8 REMARK 620 3 HIS L6153 NE2 106.8 95.1 REMARK 620 4 HIS L6157 NE2 107.1 127.0 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN G 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN G 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN I 3201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN I 3202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN J 4201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN J 4202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN K 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN K 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 6201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 6202 DBREF 1F2I G 1103 1158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I H 2103 2158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I I 3103 3158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I J 4103 4158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I K 5103 5158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I L 6103 6158 UNP P08046 EGR1_MOUSE 334 389 DBREF 1F2I A 1001 1014 PDB 1F2I 1F2I 1001 1014 DBREF 1F2I B 2001 2014 PDB 1F2I 1F2I 2001 2014 DBREF 1F2I C 3001 3014 PDB 1F2I 1F2I 3001 3014 DBREF 1F2I D 4001 4014 PDB 1F2I 1F2I 4001 4014 DBREF 1F2I E 5001 5014 PDB 1F2I 1F2I 5001 5014 DBREF 1F2I F 6001 6014 PDB 1F2I 1F2I 6001 6014 SEQRES 1 A 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 A 14 DT SEQRES 1 B 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 B 14 DT SEQRES 1 C 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 C 14 DT SEQRES 1 D 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 D 14 DT SEQRES 1 E 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 E 14 DT SEQRES 1 F 14 DA DT DG DG DG DC DG DC DG DC DC DC DA SEQRES 2 F 14 DT SEQRES 1 G 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 G 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 G 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 G 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 G 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 G 73 THR THR HIS ILE ARG THR HIS THR SEQRES 1 H 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 H 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 H 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 H 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 H 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 H 73 THR THR HIS ILE ARG THR HIS THR SEQRES 1 I 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 I 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 I 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 I 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 I 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 I 73 THR THR HIS ILE ARG THR HIS THR SEQRES 1 J 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 J 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 J 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 J 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 J 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 J 73 THR THR HIS ILE ARG THR HIS THR SEQRES 1 K 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 K 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 K 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 K 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 K 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 K 73 THR THR HIS ILE ARG THR HIS THR SEQRES 1 L 73 MET GLU PRO HIS PRO MET ASN ASN LEU LEU ASN TYR VAL SEQRES 2 L 73 VAL PRO LYS MET ARG PRO TYR ALA CYS PRO VAL GLU SER SEQRES 3 L 73 CYS ASP ARG ARG PHE SER ARG SER ASP GLU LEU THR ARG SEQRES 4 L 73 HIS ILE ARG ILE HIS THR GLY GLN LYS PRO PHE GLN CYS SEQRES 5 L 73 ARG ILE CYS MET ARG ASN PHE SER ARG SER ASP HIS LEU SEQRES 6 L 73 THR THR HIS ILE ARG THR HIS THR HET ZN G1201 1 HET ZN G1202 1 HET ZN H2201 1 HET ZN H2202 1 HET ZN I3201 1 HET ZN I3202 1 HET ZN J4201 1 HET ZN J4202 1 HET ZN K5201 1 HET ZN K5202 1 HET ZN L6201 1 HET ZN L6202 1 HETNAM ZN ZINC ION FORMUL 13 ZN 12(ZN 2+) FORMUL 25 HOH *319(H2 O) HELIX 1 1 ARG G 1118 GLY G 1131 1 14 HELIX 2 2 ARG G 1146 ARG G 1155 1 10 HELIX 3 3 ASN H 2093 TYR H 2097 5 5 HELIX 4 4 ARG H 2118 GLY H 2131 1 14 HELIX 5 5 ARG H 2146 ARG H 2155 1 10 HELIX 6 6 THR H 2156 THR H 2158 5 3 HELIX 7 7 ASN I 3093 TYR I 3097 5 5 HELIX 8 8 ARG I 3118 ILE I 3126 1 9 HELIX 9 9 ILE I 3126 GLY I 3131 1 6 HELIX 10 10 ARG I 3146 THR I 3156 1 11 HELIX 11 11 HIS I 3157 THR I 3158 5 2 HELIX 12 12 ASN J 4093 TYR J 4097 5 5 HELIX 13 13 ARG J 4118 ILE J 4126 1 9 HELIX 14 14 ILE J 4126 GLY J 4131 1 6 HELIX 15 15 ARG J 4146 ARG J 4155 1 10 HELIX 16 16 ARG K 5118 GLY K 5131 1 14 HELIX 17 17 ARG K 5146 ILE K 5154 1 9 HELIX 18 18 ARG K 5155 HIS K 5157 5 3 HELIX 19 19 ASN L 6093 ASN L 6096 5 4 HELIX 20 20 ARG L 6118 ILE L 6126 1 9 HELIX 21 21 ARG L 6127 HIS L 6129 5 3 HELIX 22 22 ARG L 6146 THR L 6152 1 7 SHEET 1 A 2 TYR G1105 ALA G1106 0 SHEET 2 A 2 ARG G1115 PHE G1116 -1 O PHE G1116 N TYR G1105 SHEET 1 B 2 PHE G1135 GLN G1136 0 SHEET 2 B 2 ASN G1143 PHE G1144 -1 N PHE G1144 O PHE G1135 SHEET 1 C 2 TYR H2105 ALA H2106 0 SHEET 2 C 2 ARG H2115 PHE H2116 -1 N PHE H2116 O TYR H2105 SHEET 1 D 2 PHE H2135 GLN H2136 0 SHEET 2 D 2 ASN H2143 PHE H2144 -1 N PHE H2144 O PHE H2135 SHEET 1 E 2 TYR I3105 ALA I3106 0 SHEET 2 E 2 ARG I3115 PHE I3116 -1 N PHE I3116 O TYR I3105 SHEET 1 F 2 PHE I3135 GLN I3136 0 SHEET 2 F 2 ASN I3143 PHE I3144 -1 N PHE I3144 O PHE I3135 SHEET 1 G 2 TYR J4105 ALA J4106 0 SHEET 2 G 2 ARG J4115 PHE J4116 -1 N PHE J4116 O TYR J4105 SHEET 1 H 2 PHE J4135 GLN J4136 0 SHEET 2 H 2 ASN J4143 PHE J4144 -1 N PHE J4144 O PHE J4135 SHEET 1 I 2 TYR K5105 ALA K5106 0 SHEET 2 I 2 ARG K5115 PHE K5116 -1 N PHE K5116 O TYR K5105 SHEET 1 J 2 PHE K5135 GLN K5136 0 SHEET 2 J 2 ASN K5143 PHE K5144 -1 N PHE K5144 O PHE K5135 SHEET 1 K 2 TYR L6105 ALA L6106 0 SHEET 2 K 2 ARG L6115 PHE L6116 -1 N PHE L6116 O TYR L6105 SHEET 1 L 2 PHE L6135 GLN L6136 0 SHEET 2 L 2 ASN L6143 PHE L6144 -1 N PHE L6144 O PHE L6135 LINK SG CYS G1107 ZN ZN G1201 1555 1555 2.33 LINK SG CYS G1112 ZN ZN G1201 1555 1555 2.20 LINK NE2 HIS G1125 ZN ZN G1201 1555 1555 2.08 LINK NE2 HIS G1129 ZN ZN G1201 1555 1555 2.09 LINK SG CYS G1137 ZN ZN G1202 1555 1555 2.40 LINK SG CYS G1140 ZN ZN G1202 1555 1555 2.11 LINK NE2 HIS G1153 ZN ZN G1202 1555 1555 2.08 LINK NE2 HIS G1157 ZN ZN G1202 1555 1555 2.11 LINK SG CYS H2107 ZN ZN H2201 1555 1555 2.37 LINK SG CYS H2112 ZN ZN H2201 1555 1555 2.21 LINK NE2 HIS H2125 ZN ZN H2201 1555 1555 2.03 LINK NE2 HIS H2129 ZN ZN H2201 1555 1555 2.06 LINK SG CYS H2137 ZN ZN H2202 1555 1555 2.43 LINK SG CYS H2140 ZN ZN H2202 1555 1555 2.10 LINK NE2 HIS H2153 ZN ZN H2202 1555 1555 2.10 LINK NE2 HIS H2157 ZN ZN H2202 1555 1555 1.93 LINK SG CYS I3107 ZN ZN I3201 1555 1555 2.35 LINK SG CYS I3112 ZN ZN I3201 1555 1555 2.34 LINK NE2 HIS I3125 ZN ZN I3201 1555 1555 1.96 LINK NE2 HIS I3129 ZN ZN I3201 1555 1555 1.98 LINK SG CYS I3137 ZN ZN I3202 1555 1555 2.38 LINK SG CYS I3140 ZN ZN I3202 1555 1555 2.34 LINK NE2 HIS I3153 ZN ZN I3202 1555 1555 2.09 LINK NE2 HIS I3157 ZN ZN I3202 1555 1555 2.06 LINK SG CYS J4107 ZN ZN J4201 1555 1555 2.32 LINK SG CYS J4112 ZN ZN J4201 1555 1555 2.18 LINK NE2 HIS J4125 ZN ZN J4201 1555 1555 2.06 LINK NE2 HIS J4129 ZN ZN J4201 1555 1555 2.11 LINK SG CYS J4137 ZN ZN J4202 1555 1555 2.39 LINK SG CYS J4140 ZN ZN J4202 1555 1555 2.17 LINK NE2 HIS J4153 ZN ZN J4202 1555 1555 2.06 LINK NE2 HIS J4157 ZN ZN J4202 1555 1555 2.04 LINK SG CYS K5107 ZN ZN K5201 1555 1555 2.32 LINK SG CYS K5112 ZN ZN K5201 1555 1555 2.27 LINK NE2 HIS K5125 ZN ZN K5201 1555 1555 2.05 LINK NE2 HIS K5129 ZN ZN K5201 1555 1555 2.02 LINK SG CYS K5140 ZN ZN K5202 1555 1555 2.57 LINK NE2 HIS K5153 ZN ZN K5202 1555 1555 2.36 LINK NE2 HIS K5157 ZN ZN K5202 1555 1555 2.72 LINK SG CYS L6107 ZN ZN L6201 1555 1555 2.75 LINK SG CYS L6112 ZN ZN L6201 1555 1555 2.58 LINK NE2 HIS L6125 ZN ZN L6201 1555 1555 2.35 LINK NE2 HIS L6129 ZN ZN L6201 1555 1555 2.40 LINK SG CYS L6137 ZN ZN L6202 1555 1555 2.68 LINK SG CYS L6140 ZN ZN L6202 1555 1555 2.48 LINK NE2 HIS L6153 ZN ZN L6202 1555 1555 2.30 LINK NE2 HIS L6157 ZN ZN L6202 1555 1555 2.14 SITE 1 AC1 4 CYS G1107 CYS G1112 HIS G1125 HIS G1129 SITE 1 AC2 4 CYS G1137 CYS G1140 HIS G1153 HIS G1157 SITE 1 AC3 4 CYS H2107 CYS H2112 HIS H2125 HIS H2129 SITE 1 AC4 4 CYS H2137 CYS H2140 HIS H2153 HIS H2157 SITE 1 AC5 4 CYS I3107 CYS I3112 HIS I3125 HIS I3129 SITE 1 AC6 4 CYS I3137 CYS I3140 HIS I3153 HIS I3157 SITE 1 AC7 4 CYS J4107 CYS J4112 HIS J4125 HIS J4129 SITE 1 AC8 4 CYS J4137 CYS J4140 HIS J4153 HIS J4157 SITE 1 AC9 4 CYS K5107 CYS K5112 HIS K5125 HIS K5129 SITE 1 BC1 4 CYS K5137 CYS K5140 HIS K5153 HIS K5157 SITE 1 BC2 4 CYS L6107 CYS L6112 HIS L6125 HIS L6129 SITE 1 BC3 4 CYS L6137 CYS L6140 HIS L6153 HIS L6157 CRYST1 86.300 86.300 133.000 90.00 90.00 120.00 P 31 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011587 0.006690 0.000000 0.00000 SCALE2 0.000000 0.013380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007519 0.00000