PDB Short entry for 1F53 HEADER TOXIN 12-JUN-00 1F53 TITLE NMR STRUCTURE OF KILLER TOXIN-LIKE PROTEIN SKLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST KILLER TOXIN-LIKE PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 CELL: F-287 KEYWDS KILLER TOXIN-LIKE PROTEIN, SKLP, CRYSTALLIN FAMILY, TOXIN EXPDTA SOLUTION NMR AUTHOR S.OHKI,E.KARIYA,K.HIRAGA,A.WAKAMIYA,T.ISOBE,K.ODA,M.KAINOSHO REVDAT 5 16-FEB-22 1F53 1 REMARK SHEET REVDAT 4 24-FEB-09 1F53 1 VERSN REVDAT 3 01-APR-03 1F53 1 JRNL REVDAT 2 07-JAN-03 1F53 1 REMARK REVDAT 1 27-DEC-00 1F53 0 JRNL AUTH S.Y.OHKI,E.KARIYA,K.HIRAGA,A.WAKAMIYA,T.ISOBE,K.ODA, JRNL AUTH 2 M.KAINOSHO JRNL TITL NMR STRUCTURE OF STREPTOMYCES KILLER TOXIN-LIKE PROTEIN, JRNL TITL 2 SKLP: FURTHER EVIDENCE FOR THE WIDE DISTRIBUTION OF JRNL TITL 3 SINGLE-DOMAIN BETAGAMMA-CRYSTALLIN SUPERFAMILY PROTEINS. JRNL REF J.MOL.BIOL. V. 305 109 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11114251 JRNL DOI 10.1006/JMBI.2000.4244 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011253. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~1MM U-13C,15N SKLP; ~1MM U-15N REMARK 210 SKLP; ~1MM UNLABELED SKLP; ~1MM REMARK 210 U-13C,15N SKLP REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY; HMQC- REMARK 210 J REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 14 H SER A 45 1.43 REMARK 500 H TRP A 16 O LYS A 43 1.45 REMARK 500 O LEU A 51 H VAL A 63 1.51 REMARK 500 O ASP A 55 H GLY A 58 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 6 160.50 57.51 REMARK 500 ARG A 7 57.71 -94.24 REMARK 500 GLU A 10 41.50 -161.15 REMARK 500 ASN A 11 -153.26 171.14 REMARK 500 PHE A 12 -170.32 44.48 REMARK 500 SER A 19 166.85 177.26 REMARK 500 SER A 24 129.97 -171.65 REMARK 500 TYR A 28 -164.08 -122.09 REMARK 500 ASN A 30 -162.65 65.04 REMARK 500 TRP A 39 81.85 173.57 REMARK 500 TRP A 40 69.99 -161.43 REMARK 500 ASP A 42 -0.92 176.66 REMARK 500 LYS A 43 161.99 156.32 REMARK 500 SER A 45 76.69 -119.10 REMARK 500 ASN A 48 4.80 166.02 REMARK 500 TYR A 54 98.56 -62.63 REMARK 500 ALA A 56 -30.63 -35.84 REMARK 500 SER A 60 83.26 -48.02 REMARK 500 ASP A 64 76.01 -101.34 REMARK 500 ARG A 65 177.75 42.05 REMARK 500 TRP A 66 58.42 31.81 REMARK 500 TYR A 71 46.72 -146.49 REMARK 500 ASN A 73 -50.79 -144.39 REMARK 500 ARG A 74 -176.28 -53.83 REMARK 500 LYS A 77 60.27 175.93 REMARK 500 SER A 80 170.46 173.03 REMARK 500 GLU A 82 75.87 -175.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 7 0.26 SIDE CHAIN REMARK 500 ARG A 31 0.18 SIDE CHAIN REMARK 500 ARG A 33 0.26 SIDE CHAIN REMARK 500 ARG A 62 0.19 SIDE CHAIN REMARK 500 ARG A 65 0.30 SIDE CHAIN REMARK 500 ARG A 74 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BB2 RELATED DB: PDB REMARK 900 2BB2 CONTAINS BETA-B2-CRYSTALLIN REMARK 900 RELATED ID: 1AG4 RELATED DB: PDB REMARK 900 1AG4 CONTAINS SPHERULIN 3A REMARK 900 RELATED ID: 1PRS RELATED DB: PDB REMARK 900 1PRS CONTAINS DEVELOPMENT-SPECIFIC PROTEIN S (SPORE COAT PROTEIN S) REMARK 900 RELATED ID: 1WKT RELATED DB: PDB REMARK 900 1WKT CONTAINS YEAST KILLER TOXIN REMARK 900 RELATED ID: 1BHU RELATED DB: PDB REMARK 900 1BHU CONTAINS METALLOPROTEINASE INHIBITOR DBREF 1F53 A 1 84 PDB 1F53 1F53 1 84 SEQRES 1 A 84 ILE ASP HIS VAL PRO CYS ARG GLY GLY GLU ASN PHE LEU SEQRES 2 A 84 LYS ILE TRP SER HIS SER GLY GLY GLN GLN SER VAL ASP SEQRES 3 A 84 CYS TYR ALA ASN ARG GLY ARG ILE ASP PHE GLY GLY TRP SEQRES 4 A 84 TRP VAL ASP LYS ILE SER THR GLY ASN ASN ASP LEU ILE SEQRES 5 A 84 TYR TYR ASP ALA ASN GLY ASP SER VAL ARG VAL ASP ARG SEQRES 6 A 84 TRP HIS ASP ILE THR TYR PRO ASN ARG PRO PRO LYS VAL SEQRES 7 A 84 ASN SER ILE GLU ILE LEU SHEET 1 S1 5 ASP A 2 HIS A 3 0 SHEET 2 S1 5 GLN A 23 ALA A 29 1 O ALA A 29 N ASP A 2 SHEET 3 S1 5 LEU A 13 HIS A 18 -1 O LEU A 13 N TYR A 28 SHEET 4 S1 5 LYS A 43 THR A 46 -1 O LYS A 43 N TRP A 16 SHEET 5 S1 5 HIS A 67 ILE A 69 -1 N ILE A 69 O ILE A 44 SHEET 1 S2 2 SER A 80 ILE A 83 0 SHEET 2 S2 2 ASP A 59 ASP A 64 -1 N VAL A 63 O LEU A 51 SSBOND 1 CYS A 6 CYS A 27 1555 1555 2.48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000