PDB Short entry for 1F5F HEADER SIGNALING PROTEIN 14-JUN-00 1F5F TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL G-DOMAIN OF SHBG IN COMPLEX WITH TITLE 2 ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX HORMONE-BINDING GLOBULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT OF SHBG (RESIDUES 1 TO 205); COMPND 5 SYNONYM: SHBG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS JELLYROLL, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.A.AVVAKUMOV,Y.A.MULLER,G.L.HAMMOND REVDAT 4 04-APR-18 1F5F 1 REMARK REVDAT 3 24-FEB-09 1F5F 1 VERSN REVDAT 2 01-APR-03 1F5F 1 JRNL REVDAT 1 06-SEP-00 1F5F 0 JRNL AUTH G.V.AVVAKUMOV,Y.A.MULLER,G.L.HAMMOND JRNL TITL STEROID-BINDING SPECIFICITY OF HUMAN SEX HORMONE-BINDING JRNL TITL 2 GLOBULIN IS INFLUENCED BY OCCUPANCY OF A ZINC-BINDING SITE. JRNL REF J.BIOL.CHEM. V. 275 25920 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10859323 JRNL DOI 10.1074/JBC.M004484200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.GRISHKOVSKAYA,G.V.AVVAKUMOV,G.SKLENAR,D.DALES,G.L.HAMMOND, REMARK 1 AUTH 2 Y.A.MULLER REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN SEX HORMONE-BINDING GLOBULIN: REMARK 1 TITL 2 STEROID TRANSPORT BY A LAMININ G-LIKE DOMAIN REMARK 1 REF EMBO J. V. 19 504 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/19.4.504 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 18785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1867 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.035 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.830 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.280 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.850 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.900 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL GROWTH: ISOPROPANOL, PEG400, REMARK 280 HEPES-BUFFER, CACL2, DHT CRYSTALS WERE SOAKED WITH 2.5 MM ZNCL2 REMARK 280 FOR THREE DAYS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.01000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.02799 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.23667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.01000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.02799 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.23667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.01000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.02799 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.23667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.01000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.02799 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.23667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.01000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.02799 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 28.23667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.01000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.02799 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.23667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.05598 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 56.47333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.05598 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 56.47333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.05598 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 56.47333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.05598 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.47333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.05598 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 56.47333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.05598 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 56.47333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM CHAIN A REMARK 300 AND A SYMMETRY PARTNER GENERATED BY A TWO-FOLD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 60.05598 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.47333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 ARG A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 ASP A 12 REMARK 465 THR A 132 REMARK 465 SER A 133 REMARK 465 LYS A 134 REMARK 465 ARG A 135 REMARK 465 ASP A 189 REMARK 465 VAL A 190 REMARK 465 GLU A 191 REMARK 465 SER A 192 REMARK 465 ASN A 193 REMARK 465 PRO A 194 REMARK 465 GLY A 195 REMARK 465 ILE A 196 REMARK 465 PHE A 197 REMARK 465 LEU A 198 REMARK 465 PRO A 199 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 THR A 202 REMARK 465 GLN A 203 REMARK 465 ALA A 204 REMARK 465 GLU A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 PHE A 67 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 72 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 125 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 154 NH1 - CZ - NH2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 40 57.52 -112.66 REMARK 500 ASP A 96 36.45 -99.16 REMARK 500 LEU A 171 -132.55 52.92 REMARK 500 THR A 183 -150.13 -124.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 26 -10.05 REMARK 500 ALA A 28 11.55 REMARK 500 LYS A 39 -10.26 REMARK 500 GLY A 53 -10.28 REMARK 500 VAL A 54 -10.26 REMARK 500 ASP A 64 12.47 REMARK 500 GLY A 70 14.04 REMARK 500 ALA A 85 13.29 REMARK 500 SER A 111 -11.84 REMARK 500 CYS A 164 -13.47 REMARK 500 SER A 169 11.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 252 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 117 OD2 REMARK 620 2 HOH A 269 O 97.6 REMARK 620 3 HIS A 101 ND1 152.6 95.0 REMARK 620 4 HOH A 312 O 101.3 79.0 105.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 250 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 O REMARK 620 2 ASP A 50 OD1 75.9 REMARK 620 3 HOH A 264 O 85.3 130.6 REMARK 620 4 HOH A 293 O 104.0 65.3 76.1 REMARK 620 5 ASP A 50 OD2 94.8 55.7 173.3 110.4 REMARK 620 6 ALA A 160 O 86.5 140.2 81.9 154.5 91.4 REMARK 620 7 HOH A 267 O 178.0 106.1 93.7 77.4 86.0 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 ASP A 65 OD1 113.7 REMARK 620 3 ASP A 65 OD2 85.4 53.8 REMARK 620 4 HIS A 136 NE2 115.3 116.1 92.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHT A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D2S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL G-DOMAIN OF SHBG DBREF 1F5F A 1 205 UNP P04278 SHBG_HUMAN 30 234 SEQRES 1 A 205 LEU ARG PRO VAL LEU PRO THR GLN SER ALA HIS ASP PRO SEQRES 2 A 205 PRO ALA VAL HIS LEU SER ASN GLY PRO GLY GLN GLU PRO SEQRES 3 A 205 ILE ALA VAL MET THR PHE ASP LEU THR LYS ILE THR LYS SEQRES 4 A 205 THR SER SER SER PHE GLU VAL ARG THR TRP ASP PRO GLU SEQRES 5 A 205 GLY VAL ILE PHE TYR GLY ASP THR ASN PRO LYS ASP ASP SEQRES 6 A 205 TRP PHE MET LEU GLY LEU ARG ASP GLY ARG PRO GLU ILE SEQRES 7 A 205 GLN LEU HIS ASN HIS TRP ALA GLN LEU THR VAL GLY ALA SEQRES 8 A 205 GLY PRO ARG LEU ASP ASP GLY ARG TRP HIS GLN VAL GLU SEQRES 9 A 205 VAL LYS MET GLU GLY ASP SER VAL LEU LEU GLU VAL ASP SEQRES 10 A 205 GLY GLU GLU VAL LEU ARG LEU ARG GLN VAL SER GLY PRO SEQRES 11 A 205 LEU THR SER LYS ARG HIS PRO ILE MET ARG ILE ALA LEU SEQRES 12 A 205 GLY GLY LEU LEU PHE PRO ALA SER ASN LEU ARG LEU PRO SEQRES 13 A 205 LEU VAL PRO ALA LEU ASP GLY CYS LEU ARG ARG ASP SER SEQRES 14 A 205 TRP LEU ASP LYS GLN ALA GLU ILE SER ALA SER ALA PRO SEQRES 15 A 205 THR SER LEU ARG SER CYS ASP VAL GLU SER ASN PRO GLY SEQRES 16 A 205 ILE PHE LEU PRO PRO GLY THR GLN ALA GLU HET CA A 250 1 HET ZN A 251 1 HET ZN A 252 1 HET DHT A 253 21 HET IPA A 254 4 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM DHT 5-ALPHA-DIHYDROTESTOSTERONE HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 CA CA 2+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 DHT C19 H30 O2 FORMUL 6 IPA C3 H8 O FORMUL 7 HOH *130(H2 O) HELIX 1 1 THR A 35 ILE A 37 5 3 HELIX 2 2 PRO A 149 LEU A 153 5 5 HELIX 3 3 ASP A 172 GLN A 174 5 3 SHEET 1 A 6 VAL A 16 HIS A 17 0 SHEET 2 A 6 GLY A 163 SER A 169 -1 N LEU A 165 O VAL A 16 SHEET 3 A 6 SER A 41 THR A 48 -1 O SER A 43 N SER A 169 SHEET 4 A 6 HIS A 101 GLU A 108 -1 N HIS A 101 O VAL A 46 SHEET 5 A 6 SER A 111 VAL A 116 -1 N SER A 111 O GLU A 108 SHEET 6 A 6 GLU A 119 LEU A 124 -1 N GLU A 119 O VAL A 116 SHEET 1 B 7 GLN A 86 GLY A 90 0 SHEET 2 B 7 ARG A 75 HIS A 81 -1 N ILE A 78 O VAL A 89 SHEET 3 B 7 ASP A 65 ARG A 72 -1 N TRP A 66 O HIS A 81 SHEET 4 B 7 GLY A 53 ASN A 61 -1 O GLY A 53 N LEU A 71 SHEET 5 B 7 ILE A 138 LEU A 143 -1 N ARG A 140 O ASP A 59 SHEET 6 B 7 ALA A 28 ASP A 33 -1 O ALA A 28 N LEU A 143 SHEET 7 B 7 GLU A 176 SER A 180 -1 N ILE A 177 O THR A 31 SSBOND 1 CYS A 164 CYS A 188 1555 1555 2.03 LINK ZN ZN A 252 OD2 ASP A 117 1555 1555 1.70 LINK CA CA A 250 O GLU A 52 1555 1555 2.34 LINK CA CA A 250 OD1 ASP A 50 1555 1555 2.47 LINK CA CA A 250 O HOH A 264 1555 1555 2.01 LINK CA CA A 250 O HOH A 293 1555 1555 2.42 LINK CA CA A 250 OD2 ASP A 50 1555 1555 1.91 LINK CA CA A 250 O ALA A 160 1555 1555 2.25 LINK CA CA A 250 O HOH A 267 1555 1555 2.32 LINK ZN ZN A 251 NE2 HIS A 83 1555 1555 2.05 LINK ZN ZN A 251 OD1 ASP A 65 1555 1555 2.17 LINK ZN ZN A 251 OD2 ASP A 65 1555 1555 2.67 LINK ZN ZN A 251 NE2 HIS A 136 1555 1555 2.13 LINK ZN ZN A 252 O HOH A 269 1555 1555 2.12 LINK ZN ZN A 252 ND1 HIS A 101 1555 1555 2.09 LINK ZN ZN A 252 O HOH A 312 1555 1555 2.61 SITE 1 AC1 6 ASP A 50 GLU A 52 ALA A 160 HOH A 264 SITE 2 AC1 6 HOH A 267 HOH A 293 SITE 1 AC2 3 ASP A 65 HIS A 83 HIS A 136 SITE 1 AC3 4 HIS A 101 ASP A 117 HOH A 269 HOH A 312 SITE 1 AC4 10 THR A 40 SER A 41 SER A 42 ASP A 65 SITE 2 AC4 10 PHE A 67 ASN A 82 VAL A 105 MET A 107 SITE 3 AC4 10 LEU A 171 HOH A 307 SITE 1 AC5 4 GLU A 104 LYS A 106 GLU A 115 GLY A 118 CRYST1 104.020 104.020 84.710 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009610 0.005550 0.000000 0.00000 SCALE2 0.000000 0.011100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011800 0.00000