PDB Short entry for 1F62 HEADER TRANSCRIPTION 19-JUN-00 1F62 TITLE WSTF-PHD COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR WSTF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD ZINC FINGER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ZN-FINGER, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.PASCUAL,M.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT REVDAT 4 06-NOV-19 1F62 1 REMARK REVDAT 3 24-FEB-09 1F62 1 VERSN REVDAT 2 21-MAR-01 1F62 1 JRNL REVDAT 1 27-DEC-00 1F62 0 JRNL AUTH J.PASCUAL,M.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT JRNL TITL STRUCTURE OF THE PHD ZINC FINGER FROM HUMAN WILLIAMS-BEUREN JRNL TITL 2 SYNDROME TRANSCRIPTION FACTOR. JRNL REF J.MOL.BIOL. V. 304 723 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 11124022 JRNL DOI 10.1006/JMBI.2000.4113 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1, DYANA 1 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUNTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F62 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011287. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM WSTF-PHD U-15N,13C; REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 USING AMBER-6 PROGRAM REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 17 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 5 -71.32 -65.86 REMARK 500 1 ASP A 13 -80.45 -79.20 REMARK 500 1 LYS A 14 75.38 -151.54 REMARK 500 2 VAL A 5 -75.69 -65.36 REMARK 500 2 GLU A 11 47.43 -97.35 REMARK 500 2 ILE A 16 74.82 -100.12 REMARK 500 2 PRO A 38 -168.40 -102.71 REMARK 500 2 PRO A 49 84.88 -58.36 REMARK 500 3 VAL A 5 -72.33 -68.56 REMARK 500 3 ARG A 7 64.01 60.37 REMARK 500 3 ASP A 13 -74.82 -85.67 REMARK 500 3 LYS A 14 82.60 -159.99 REMARK 500 3 ARG A 31 121.08 -170.21 REMARK 500 3 ALA A 50 67.46 -156.94 REMARK 500 4 ARG A 2 90.47 -69.91 REMARK 500 4 VAL A 5 -70.05 -65.36 REMARK 500 4 GLU A 11 41.96 -80.43 REMARK 500 4 LYS A 14 106.59 -167.63 REMARK 500 5 ARG A 7 -0.56 72.89 REMARK 500 5 ASP A 13 -80.27 -85.58 REMARK 500 5 LYS A 14 81.05 -169.17 REMARK 500 5 ASN A 22 70.21 54.48 REMARK 500 5 LEU A 30 -74.42 -61.77 REMARK 500 5 PRO A 49 83.41 -63.56 REMARK 500 6 VAL A 5 -73.35 -72.70 REMARK 500 6 LEU A 30 -72.73 -82.53 REMARK 500 6 ASP A 39 64.57 -111.22 REMARK 500 7 GLU A 20 -70.98 -67.41 REMARK 500 7 ASN A 22 74.60 58.82 REMARK 500 7 LEU A 30 -78.91 -81.79 REMARK 500 7 GLN A 48 78.14 -113.02 REMARK 500 8 ASP A 13 -71.41 -92.87 REMARK 500 8 ASN A 22 60.23 60.63 REMARK 500 8 LEU A 30 -70.42 -63.58 REMARK 500 8 TYR A 35 -50.23 -147.69 REMARK 500 8 PRO A 45 -9.84 -58.14 REMARK 500 9 VAL A 5 -75.22 -70.32 REMARK 500 9 ASP A 13 -55.29 -120.39 REMARK 500 10 LYS A 9 59.53 -107.06 REMARK 500 10 ASP A 13 -69.87 -96.87 REMARK 500 10 LYS A 14 77.43 -165.63 REMARK 500 10 ILE A 16 70.19 -116.37 REMARK 500 10 PRO A 38 -112.15 -83.88 REMARK 500 10 ASP A 39 39.56 -89.47 REMARK 500 11 ARG A 7 41.50 39.10 REMARK 500 11 ASP A 13 -67.21 -96.35 REMARK 500 11 LYS A 14 76.68 -164.92 REMARK 500 11 ALA A 50 -178.71 -172.36 REMARK 500 12 GLU A 11 40.03 -93.75 REMARK 500 12 ASP A 13 -76.21 -93.21 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 13 TYR A 35 0.07 SIDE CHAIN REMARK 500 15 ARG A 2 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 52 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 3 SG 113.6 REMARK 620 3 CYS A 29 SG 111.4 109.6 REMARK 620 4 HIS A 26 ND1 105.3 105.3 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 53 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 47 SG 108.1 REMARK 620 3 CYS A 44 SG 113.6 110.6 REMARK 620 4 CYS A 18 SG 105.5 113.5 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 52 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 53 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2913 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT LIST DBREF 1F62 A 1 51 UNP Q9UIG0 BAZ1B_HUMAN 1185 1235 SEQRES 1 A 51 ALA ARG CYS LYS VAL CYS ARG LYS LYS GLY GLU ASP ASP SEQRES 2 A 51 LYS LEU ILE LEU CYS ASP GLU CYS ASN LYS ALA PHE HIS SEQRES 3 A 51 LEU PHE CYS LEU ARG PRO ALA LEU TYR GLU VAL PRO ASP SEQRES 4 A 51 GLY GLU TRP GLN CYS PRO ALA CYS GLN PRO ALA THR HET ZN A 52 1 HET ZN A 53 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 HIS A 26 ARG A 31 1 6 SHEET 1 A 2 ILE A 16 LEU A 17 0 SHEET 2 A 2 ALA A 24 PHE A 25 -1 O PHE A 25 N ILE A 16 LINK ZN ZN A 52 SG CYS A 6 1555 1555 2.30 LINK ZN ZN A 52 SG CYS A 3 1555 1555 2.30 LINK ZN ZN A 52 SG CYS A 29 1555 1555 2.30 LINK ZN ZN A 52 ND1 HIS A 26 1555 1555 2.10 LINK ZN ZN A 53 SG CYS A 21 1555 1555 2.30 LINK ZN ZN A 53 SG CYS A 47 1555 1555 2.30 LINK ZN ZN A 53 SG CYS A 44 1555 1555 2.30 LINK ZN ZN A 53 SG CYS A 18 1555 1555 2.29 SITE 1 AC1 4 CYS A 3 CYS A 6 HIS A 26 CYS A 29 SITE 1 AC2 4 CYS A 18 CYS A 21 CYS A 44 CYS A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000