PDB Short entry for 1F7N HEADER VIRAL PROTEIN, HYDROLASE 27-JUN-00 1F7N TITLE CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP TITLE 2 PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DUTPASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_TAXID: 11673; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: FIV-34TF10 KEYWDS EIGHT STRANDED BETA BARREL PROTEIN, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.PRASAD,E.A.STURA,J.H.ELDER,C.D.STOUT REVDAT 5 07-FEB-24 1F7N 1 REMARK LINK REVDAT 4 04-OCT-17 1F7N 1 REMARK REVDAT 3 13-JUL-11 1F7N 1 VERSN REVDAT 2 24-FEB-09 1F7N 1 VERSN REVDAT 1 06-SEP-00 1F7N 0 JRNL AUTH G.S.PRASAD,E.A.STURA,J.H.ELDER,C.D.STOUT JRNL TITL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP JRNL TITL 2 PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE JRNL TITL 3 CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 1100 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10957629 JRNL DOI 10.1107/S0907444900009197 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.S.PRASAD,E.A.STURA,D.E.MCREE,G.S.LACO,C.HASSELKUS-LIGHT, REMARK 1 AUTH 2 J.H.ELDER,C.D.STOUT REMARK 1 TITL CRYSTAL STRUCTURE OF DUTP PYROPHOSPHATASE FROM FELINE REMARK 1 TITL 2 IMMUNODEFICIENCY VIRUS REMARK 1 REF PROTEIN SCI. V. 5 2429 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 29.50 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15858 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.02700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% MPEG 5K, 50 MM CACODYLATE. THE REMARK 280 CRYSTALS WERE SOAKED IN 10 MM DUTP FOR 24 HRS, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.60500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.60500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMER IS THE FUNCTIONAL FORM OF THE ENZYME REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 39.56500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 68.52859 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -39.56500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 68.52859 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 137 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 138 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 120 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 458 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 459 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 GLU A 121 REMARK 465 ARG A 122 REMARK 465 GLY A 123 REMARK 465 ASP A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 TYR A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 PHE A 133 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 TRP A 136 REMARK 465 MET B 318 REMARK 465 ASP B 319 REMARK 465 SER B 320 REMARK 465 GLU B 321 REMARK 465 ARG B 322 REMARK 465 GLY B 323 REMARK 465 ASP B 324 REMARK 465 ASN B 325 REMARK 465 GLY B 326 REMARK 465 TYR B 327 REMARK 465 GLY B 328 REMARK 465 SER B 329 REMARK 465 THR B 330 REMARK 465 GLY B 331 REMARK 465 VAL B 332 REMARK 465 PHE B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 TRP B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 428 O HOH A 449 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 260 -10.49 -47.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 137 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 64 OD1 90.9 REMARK 620 3 ASP A 64 OD1 90.9 90.9 REMARK 620 4 HOH A 404 O 91.9 175.3 85.3 REMARK 620 5 HOH A 404 O 85.3 91.9 175.3 92.0 REMARK 620 6 HOH A 404 O 175.3 85.3 91.9 92.0 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 138 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 404 O REMARK 620 2 HOH A 404 O 55.0 REMARK 620 3 HOH A 404 O 55.0 55.0 REMARK 620 4 HOH A 412 O 80.6 131.5 85.2 REMARK 620 5 HOH A 412 O 85.2 80.6 131.5 117.4 REMARK 620 6 HOH A 412 O 131.5 85.2 80.6 117.4 117.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 120 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 264 OD1 REMARK 620 2 ASP B 264 OD1 50.7 REMARK 620 3 ASP B 264 OD1 50.3 51.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 337 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F7D RELATED DB: PDB REMARK 900 1F7D CONTAINS THE SAME PROTEIN IN P63 REMARK 900 RELATED ID: 1F7K RELATED DB: PDB REMARK 900 1F7K CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMP IN P63 REMARK 900 RELATED ID: 1F7O RELATED DB: PDB REMARK 900 1F7O CONTAINS THE SAME PROTEIN IN P212121 REMARK 900 RELATED ID: 1F7P RELATED DB: PDB REMARK 900 1F7P CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUDP IN P212121 REMARK 900 RELATED ID: 1F7Q RELATED DB: PDB REMARK 900 1F7Q CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUTP IN P212121 REMARK 900 RELATED ID: 1F7R RELATED DB: PDB REMARK 900 1F7R CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUDP IN P213 DBREF 1F7N A 1 136 UNP P16088 POL_FIVPE 711 846 DBREF 1F7N B 201 336 UNP P16088 POL_FIVPE 711 846 SEQRES 1 A 136 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 A 136 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 A 136 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 A 136 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 A 136 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 A 136 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 A 136 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 A 136 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 A 136 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 A 136 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 A 136 GLY VAL PHE SER SER TRP SEQRES 1 B 136 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 B 136 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 B 136 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 B 136 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 B 136 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 B 136 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 B 136 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 B 136 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 B 136 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 B 136 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 B 136 GLY VAL PHE SER SER TRP HET MG A 137 1 HET MG A 138 1 HET UMP A 139 20 HET MG B 120 1 HET UMP B 337 20 HETNAM MG MAGNESIUM ION HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 3 MG 3(MG 2+) FORMUL 5 UMP 2(C9 H13 N2 O8 P) FORMUL 8 HOH *79(H2 O) HELIX 1 1 LYS A 55 SER A 60 1 6 HELIX 2 2 LYS B 255 SER B 260 1 6 SHEET 1 A 2 ILE A 2 GLU A 4 0 SHEET 2 A 2 LYS A 41 MET A 43 -1 O LYS A 41 N GLU A 4 SHEET 1 B 4 TYR A 18 LEU A 21 0 SHEET 2 B 4 LYS A 97 PRO A 105 -1 N ILE A 98 O LEU A 20 SHEET 3 B 4 TYR A 48 ILE A 53 -1 N TRP A 49 O LEU A 104 SHEET 4 B 4 VAL A 69 ILE A 70 -1 N ILE A 70 O GLY A 50 SHEET 1 C 2 ILE A 26 LEU A 28 0 SHEET 2 C 2 ILE A 90 LEU A 92 -1 O ILE A 90 N LEU A 28 SHEET 1 D 3 VAL A 33 PRO A 37 0 SHEET 2 D 3 GLY A 79 ASN A 84 -1 N VAL A 80 O ILE A 36 SHEET 3 D 3 LEU A 63 LEU A 66 -1 N ASP A 64 O ILE A 83 SHEET 1 E 2 ILE B 202 ILE B 203 0 SHEET 2 E 2 LEU B 242 MET B 243 -1 N MET B 243 O ILE B 202 SHEET 1 F 4 TYR B 218 LEU B 221 0 SHEET 2 F 4 LYS B 297 PRO B 305 -1 N ILE B 298 O LEU B 220 SHEET 3 F 4 TYR B 248 ILE B 253 -1 N TRP B 249 O LEU B 304 SHEET 4 F 4 VAL B 269 ILE B 270 -1 O ILE B 270 N GLY B 250 SHEET 1 G 2 ILE B 226 LEU B 228 0 SHEET 2 G 2 ILE B 290 LEU B 292 -1 O ILE B 290 N LEU B 228 SHEET 1 H 3 VAL B 233 PRO B 237 0 SHEET 2 H 3 GLY B 279 ASN B 284 -1 O VAL B 280 N ILE B 236 SHEET 3 H 3 LEU B 263 LEU B 266 -1 N ASP B 264 O ILE B 283 LINK OD1 ASP A 64 MG MG A 137 1555 1555 2.02 LINK OD1 ASP A 64 MG MG A 137 2555 1555 2.02 LINK OD1 ASP A 64 MG MG A 137 3555 1555 2.02 LINK MG MG A 137 O HOH A 404 1555 1555 1.95 LINK MG MG A 137 O HOH A 404 1555 2555 1.95 LINK MG MG A 137 O HOH A 404 1555 3555 1.95 LINK MG MG A 138 O HOH A 404 1555 1555 3.05 LINK MG MG A 138 O HOH A 404 1555 3555 3.05 LINK MG MG A 138 O HOH A 404 1555 2555 3.05 LINK MG MG A 138 O HOH A 412 1555 1555 2.84 LINK MG MG A 138 O HOH A 412 1555 3555 2.84 LINK MG MG A 138 O HOH A 412 1555 2555 2.84 LINK MG MG B 120 OD1 ASP B 264 1555 1555 3.00 LINK MG MG B 120 OD1 ASP B 264 1555 3565 2.89 LINK MG MG B 120 OD1 ASP B 264 1555 2665 2.94 SITE 1 AC1 3 ASP A 64 MG A 138 HOH A 404 SITE 1 AC2 1 ASP B 264 SITE 1 AC3 3 MG A 137 HOH A 404 HOH A 412 SITE 1 AC4 15 LYS A 55 SER A 56 LEU A 66 GLY A 68 SITE 2 AC4 15 VAL A 69 ILE A 70 ASP A 71 TYR A 74 SITE 3 AC4 15 GLY A 79 ILE A 81 HOH A 401 HOH A 410 SITE 4 AC4 15 HOH A 432 HOH A 446 HOH A 451 SITE 1 AC5 11 LYS B 255 SER B 256 GLY B 268 VAL B 269 SITE 2 AC5 11 ASP B 271 TYR B 274 GLY B 279 GLN B 300 SITE 3 AC5 11 HOH B 415 HOH B 416 HOH B 422 CRYST1 79.130 79.130 87.210 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012637 0.007296 0.000000 0.00000 SCALE2 0.000000 0.014592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011467 0.00000