PDB Short entry for 1FGH HEADER LYASE 14-SEP-96 1FGH TITLE COMPLEX WITH 4-HYDROXY-TRANS-ACONITATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACONITASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.3; COMPND 5 OTHER_DETAILS: [4FE-4S] BOUND BY CYS 358, CYS 421, CYS 424 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: HEART; SOURCE 6 TISSUE: HEART MITOCHONDRIA KEYWDS LYASE, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.LAUBLE,M.C.KENNEDY,M.H.EMPTAGE,H.BEINERT,C.D.STOUT REVDAT 4 07-FEB-24 1FGH 1 REMARK SEQADV SEQRES LINK REVDAT 3 24-MAR-09 1FGH 1 ATOM CONECT REVDAT 2 24-FEB-09 1FGH 1 VERSN REVDAT 1 23-DEC-96 1FGH 0 JRNL AUTH H.LAUBLE,M.C.KENNEDY,M.H.EMPTAGE,H.BEINERT,C.D.STOUT JRNL TITL THE REACTION OF FLUOROCITRATE WITH ACONITASE AND THE CRYSTAL JRNL TITL 2 STRUCTURE OF THE ENZYME-INHIBITOR COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 93 13699 1996 JRNL REFN ISSN 0027-8424 JRNL PMID 8942997 JRNL DOI 10.1073/PNAS.93.24.13699 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 52746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 3.010 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XENTRONICS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52746 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: B 1 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 X+1/2,Y,Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.95000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.10000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PCA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 48 NZ LYS A 493 1556 2.01 REMARK 500 OD1 ASP A 48 NZ LYS A 493 1556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 9 NE2 HIS A 9 CD2 -0.066 REMARK 500 HIS A 13 NE2 HIS A 13 CD2 -0.075 REMARK 500 HIS A 46 NE2 HIS A 46 CD2 -0.067 REMARK 500 HIS A 147 NE2 HIS A 147 CD2 -0.067 REMARK 500 HIS A 298 NE2 HIS A 298 CD2 -0.067 REMARK 500 HIS A 321 NE2 HIS A 321 CD2 -0.072 REMARK 500 HIS A 379 NE2 HIS A 379 CD2 -0.069 REMARK 500 HIS A 646 NE2 HIS A 646 CD2 -0.072 REMARK 500 HIS A 717 NE2 HIS A 717 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP A 139 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 139 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 195 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 195 CG - CD1 - NE1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TRP A 195 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP A 214 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 214 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 PRO A 325 CA - C - N ANGL. DEV. = 19.0 DEGREES REMARK 500 TRP A 346 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP A 346 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 TYR A 405 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 410 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 410 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 TRP A 428 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 428 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 430 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 430 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 447 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 452 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 498 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 TYR A 517 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 LYS A 522 CA - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP A 523 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 TRP A 547 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 547 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP A 551 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 THR A 566 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 TRP A 576 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 576 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 580 CG - CD - NE ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 580 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 580 NE - CZ - NH1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 580 NE - CZ - NH2 ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 600 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 600 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP A 630 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 630 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 630 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 666 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 666 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 738 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 79.19 -118.86 REMARK 500 ARG A 17 66.46 -109.61 REMARK 500 GLN A 106 -66.45 -150.95 REMARK 500 PRO A 169 -17.58 -44.63 REMARK 500 THR A 229 166.45 72.48 REMARK 500 THR A 267 -179.50 -178.48 REMARK 500 SER A 357 167.29 68.14 REMARK 500 ASN A 360 62.21 -153.50 REMARK 500 TYR A 445 -148.38 -89.07 REMARK 500 ASN A 448 35.26 -147.71 REMARK 500 ASP A 454 11.01 -150.85 REMARK 500 ASP A 523 -116.22 -145.41 REMARK 500 SER A 524 -77.69 -23.80 REMARK 500 SER A 525 15.08 48.79 REMARK 500 ALA A 573 -129.40 -102.03 REMARK 500 ASP A 635 -139.38 -97.05 REMARK 500 GLN A 753 18.30 56.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 999 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 358 SG REMARK 620 2 SF4 A 999 S2 120.0 REMARK 620 3 SF4 A 999 S3 100.2 107.0 REMARK 620 4 SF4 A 999 S4 114.1 107.7 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 999 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 SF4 A 999 S1 106.8 REMARK 620 3 SF4 A 999 S2 124.4 105.4 REMARK 620 4 SF4 A 999 S4 111.0 103.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 999 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 SF4 A 999 S1 117.3 REMARK 620 3 SF4 A 999 S3 108.2 103.0 REMARK 620 4 SF4 A 999 S4 111.5 109.8 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 999 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATH A 755 O4 REMARK 620 2 SF4 A 999 S1 88.2 REMARK 620 3 SF4 A 999 S2 167.1 101.0 REMARK 620 4 SF4 A 999 S3 88.6 96.8 99.2 REMARK 620 5 ATH A 755 OH 76.8 95.5 93.2 160.6 REMARK 620 6 HOH A1000 O 80.5 167.9 90.9 78.7 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATH A 755 DBREF 1FGH A 2 754 UNP P20004 ACON_BOVIN 29 781 SEQADV 1FGH SER A 303 UNP P20004 PRO 330 CONFLICT SEQADV 1FGH LEU A 310 UNP P20004 VAL 337 CONFLICT SEQADV 1FGH SER A 597 UNP P20004 ILE 624 CONFLICT SEQADV 1FGH SER A 647 UNP P20004 ARG 674 CONFLICT SEQADV 1FGH PHE A 653 UNP P20004 HIS 680 CONFLICT SEQADV 1FGH THR A 712 UNP P20004 LYS 739 CONFLICT SEQRES 1 A 754 PCA ARG ALA LYS VAL ALA MET SER HIS PHE GLU PRO HIS SEQRES 2 A 754 GLU TYR ILE ARG TYR ASP LEU LEU GLU LYS ASN ILE ASP SEQRES 3 A 754 ILE VAL ARG LYS ARG LEU ASN ARG PRO LEU THR LEU SER SEQRES 4 A 754 GLU LYS ILE VAL TYR GLY HIS LEU ASP ASP PRO ALA ASN SEQRES 5 A 754 GLN GLU ILE GLU ARG GLY LYS THR TYR LEU ARG LEU ARG SEQRES 6 A 754 PRO ASP ARG VAL ALA MET GLN ASP ALA THR ALA GLN MET SEQRES 7 A 754 ALA MET LEU GLN PHE ILE SER SER GLY LEU PRO LYS VAL SEQRES 8 A 754 ALA VAL PRO SER THR ILE HIS CYS ASP HIS LEU ILE GLU SEQRES 9 A 754 ALA GLN LEU GLY GLY GLU LYS ASP LEU ARG ARG ALA LYS SEQRES 10 A 754 ASP ILE ASN GLN GLU VAL TYR ASN PHE LEU ALA THR ALA SEQRES 11 A 754 GLY ALA LYS TYR GLY VAL GLY PHE TRP ARG PRO GLY SER SEQRES 12 A 754 GLY ILE ILE HIS GLN ILE ILE LEU GLU ASN TYR ALA TYR SEQRES 13 A 754 PRO GLY VAL LEU LEU ILE GLY THR ASP SER HIS THR PRO SEQRES 14 A 754 ASN GLY GLY GLY LEU GLY GLY ILE CYS ILE GLY VAL GLY SEQRES 15 A 754 GLY ALA ASP ALA VAL ASP VAL MET ALA GLY ILE PRO TRP SEQRES 16 A 754 GLU LEU LYS CYS PRO LYS VAL ILE GLY VAL LYS LEU THR SEQRES 17 A 754 GLY SER LEU SER GLY TRP THR SER PRO LYS ASP VAL ILE SEQRES 18 A 754 LEU LYS VAL ALA GLY ILE LEU THR VAL LYS GLY GLY THR SEQRES 19 A 754 GLY ALA ILE VAL GLU TYR HIS GLY PRO GLY VAL ASP SER SEQRES 20 A 754 ILE SER CYS THR GLY MET ALA THR ILE CYS ASN MET GLY SEQRES 21 A 754 ALA GLU ILE GLY ALA THR THR SER VAL PHE PRO TYR ASN SEQRES 22 A 754 HIS ARG MET LYS LYS TYR LEU SER LYS THR GLY ARG ALA SEQRES 23 A 754 ASP ILE ALA ASN LEU ALA ASP GLU PHE LYS ASP HIS LEU SEQRES 24 A 754 VAL PRO ASP SER GLY CYS HIS TYR ASP GLN LEU ILE GLU SEQRES 25 A 754 ILE ASN LEU SER GLU LEU LYS PRO HIS ILE ASN GLY PRO SEQRES 26 A 754 PHE THR PRO ASP LEU ALA HIS PRO VAL ALA GLU VAL GLY SEQRES 27 A 754 SER VAL ALA GLU LYS GLU GLY TRP PRO LEU ASP ILE ARG SEQRES 28 A 754 VAL GLY LEU ILE GLY SER CYS THR ASN SER SER TYR GLU SEQRES 29 A 754 ASP MET GLY ARG SER ALA ALA VAL ALA LYS GLN ALA LEU SEQRES 30 A 754 ALA HIS GLY LEU LYS CYS LYS SER GLN PHE THR ILE THR SEQRES 31 A 754 PRO GLY SER GLU GLN ILE ARG ALA THR ILE GLU ARG ASP SEQRES 32 A 754 GLY TYR ALA GLN VAL LEU ARG ASP VAL GLY GLY ILE VAL SEQRES 33 A 754 LEU ALA ASN ALA CYS GLY PRO CYS ILE GLY GLN TRP ASP SEQRES 34 A 754 ARG LYS ASP ILE LYS LYS GLY GLU LYS ASN THR ILE VAL SEQRES 35 A 754 THR SER TYR ASN ARG ASN PHE THR GLY ARG ASN ASP ALA SEQRES 36 A 754 ASN PRO GLU THR HIS ALA PHE VAL THR SER PRO GLU ILE SEQRES 37 A 754 VAL THR ALA LEU ALA ILE ALA GLY THR LEU LYS PHE ASN SEQRES 38 A 754 PRO GLU THR ASP PHE LEU THR GLY LYS ASP GLY LYS LYS SEQRES 39 A 754 PHE LYS LEU GLU ALA PRO ASP ALA ASP GLU LEU PRO ARG SEQRES 40 A 754 ALA GLU PHE ASP PRO GLY GLN ASP THR TYR GLN HIS PRO SEQRES 41 A 754 PRO LYS ASP SER SER GLY GLN ARG VAL ASP VAL SER PRO SEQRES 42 A 754 THR SER GLN ARG LEU GLN LEU LEU GLU PRO PHE ASP LYS SEQRES 43 A 754 TRP ASP GLY LYS ASP LEU GLU ASP LEU GLN ILE LEU ILE SEQRES 44 A 754 LYS VAL LYS GLY LYS CYS THR THR ASP HIS ILE SER ALA SEQRES 45 A 754 ALA GLY PRO TRP LEU LYS PHE ARG GLY HIS LEU ASP ASN SEQRES 46 A 754 ILE SER ASN ASN LEU LEU ILE GLY ALA ILE ASN SER GLU SEQRES 47 A 754 ASN ARG LYS ALA ASN SER VAL ARG ASN ALA VAL THR GLN SEQRES 48 A 754 GLU PHE GLY PRO VAL PRO ASP THR ALA ARG TYR TYR LYS SEQRES 49 A 754 GLN HIS GLY ILE ARG TRP VAL VAL ILE GLY ASP GLU ASN SEQRES 50 A 754 TYR GLY GLU GLY SER SER ARG GLU HIS SER ALA LEU GLU SEQRES 51 A 754 PRO ARG PHE LEU GLY GLY ARG ALA ILE ILE THR LYS SER SEQRES 52 A 754 PHE ALA ARG ILE HIS GLU THR ASN LEU LYS LYS GLN GLY SEQRES 53 A 754 LEU LEU PRO LEU THR PHE ALA ASP PRO ALA ASP TYR ASN SEQRES 54 A 754 LYS ILE HIS PRO VAL ASP LYS LEU THR ILE GLN GLY LEU SEQRES 55 A 754 LYS ASP PHE ALA PRO GLY LYS PRO LEU THR CYS ILE ILE SEQRES 56 A 754 LYS HIS PRO ASN GLY THR GLN GLU THR ILE LEU LEU ASN SEQRES 57 A 754 HIS THR PHE ASN GLU THR GLN ILE GLU TRP PHE ARG ALA SEQRES 58 A 754 GLY SER ALA LEU ASN ARG MET LYS GLU LEU GLN GLN LYS HET SF4 A 999 8 HET ATH A 755 15 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ATH 4-HYDROXY-ACONITATE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 ATH C6 H3 O7 3- FORMUL 4 HOH *256(H2 O) HELIX 1 1 TYR A 18 LEU A 32 1 15 HELIX 2 2 LEU A 38 HIS A 46 1 9 HELIX 3 3 ASP A 73 SER A 86 1 14 HELIX 4 4 GLY A 109 ILE A 119 1 11 HELIX 5 5 GLN A 121 TYR A 134 1 14 HELIX 6 6 ILE A 146 ASN A 153 1 8 HELIX 7 7 THR A 168 LEU A 174 5 7 HELIX 8 8 GLY A 183 MET A 190 1 8 HELIX 9 9 PRO A 217 LEU A 228 1 12 HELIX 10 10 PRO A 243 SER A 247 5 5 HELIX 11 11 CYS A 250 ILE A 263 1 14 HELIX 12 12 HIS A 274 LYS A 282 1 9 HELIX 13 13 ALA A 286 GLU A 294 1 9 HELIX 14 14 LYS A 296 HIS A 298 5 3 HELIX 15 15 VAL A 334 GLU A 344 1 11 HELIX 16 16 TYR A 363 HIS A 379 1 17 HELIX 17 17 GLU A 394 ARG A 402 1 9 HELIX 18 18 TYR A 405 ASP A 411 1 7 HELIX 19 19 GLY A 422 ILE A 425 5 4 HELIX 20 20 PRO A 466 ALA A 475 1 10 HELIX 21 21 THR A 567 ILE A 570 1 4 HELIX 22 22 GLY A 574 PHE A 579 5 6 HELIX 23 23 LEU A 583 ASN A 589 1 7 HELIX 24 24 VAL A 616 GLN A 625 1 10 HELIX 25 25 GLU A 645 PHE A 653 5 9 HELIX 26 26 ARG A 666 GLN A 675 1 10 HELIX 27 27 PRO A 685 LYS A 690 5 6 HELIX 28 28 LEU A 702 ASP A 704 5 3 HELIX 29 29 GLU A 733 ALA A 741 1 9 HELIX 30 30 ALA A 744 GLN A 752 1 9 SHEET 1 A 2 TYR A 61 LEU A 64 0 SHEET 2 A 2 TRP A 195 LYS A 198 -1 N LEU A 197 O LEU A 62 SHEET 1 B 5 ILE A 177 GLY A 180 0 SHEET 2 B 5 LEU A 160 GLY A 163 1 N LEU A 161 O ILE A 177 SHEET 3 B 5 ARG A 68 GLN A 72 1 N ARG A 68 O ILE A 162 SHEET 4 B 5 PRO A 94 HIS A 98 1 N PRO A 94 O VAL A 69 SHEET 5 B 5 GLY A 137 TRP A 139 1 N GLY A 137 O ILE A 97 SHEET 1 C 4 GLN A 309 ASN A 314 0 SHEET 2 C 4 LYS A 201 THR A 208 1 N GLY A 204 O GLN A 309 SHEET 3 C 4 ALA A 236 HIS A 241 1 N ILE A 237 O LYS A 201 SHEET 4 C 4 THR A 267 PHE A 270 1 N THR A 267 O VAL A 238 SHEET 1 D 2 HIS A 321 ASN A 323 0 SHEET 2 D 2 ALA A 331 PRO A 333 -1 N HIS A 332 O ILE A 322 SHEET 1 E 5 GLY A 414 LEU A 417 0 SHEET 2 E 5 GLN A 386 THR A 390 1 N PHE A 387 O ILE A 415 SHEET 3 E 5 ILE A 350 ILE A 355 1 N GLY A 353 O GLN A 386 SHEET 4 E 5 ASN A 439 THR A 443 1 N THR A 440 O ARG A 351 SHEET 5 E 5 THR A 459 VAL A 463 1 N HIS A 460 O ASN A 439 SHEET 1 F 2 PHE A 486 THR A 488 0 SHEET 2 F 2 LYS A 494 LYS A 496 -1 N PHE A 495 O LEU A 487 SHEET 1 G 4 LEU A 678 THR A 681 0 SHEET 2 G 4 GLY A 656 THR A 661 1 N ILE A 659 O LEU A 678 SHEET 3 G 4 TRP A 630 GLY A 634 1 N TRP A 630 O ARG A 657 SHEET 4 G 4 GLN A 556 LYS A 560 1 N GLN A 556 O VAL A 631 SHEET 1 H 3 LYS A 696 GLN A 700 0 SHEET 2 H 3 LEU A 711 LYS A 716 -1 N LYS A 716 O LYS A 696 SHEET 3 H 3 GLN A 722 LEU A 727 -1 N LEU A 727 O LEU A 711 LINK SG CYS A 358 FE1 SF4 A 999 1555 1555 2.36 LINK SG CYS A 421 FE3 SF4 A 999 1555 1555 2.28 LINK SG CYS A 424 FE2 SF4 A 999 1555 1555 2.35 LINK O4 ATH A 755 FE4 SF4 A 999 1555 1555 2.27 LINK OH ATH A 755 FE4 SF4 A 999 1555 1555 2.15 LINK FE4 SF4 A 999 O HOH A1000 1555 1555 2.48 CISPEP 1 GLY A 324 PRO A 325 0 16.41 SITE 1 AC1 11 HIS A 101 ASP A 165 HIS A 167 SER A 357 SITE 2 AC1 11 CYS A 358 CYS A 421 CYS A 424 ILE A 425 SITE 3 AC1 11 ASN A 446 ATH A 755 HOH A1000 SITE 1 AC2 14 GLN A 72 ALA A 74 THR A 75 HIS A 101 SITE 2 AC2 14 ASP A 165 SER A 166 ARG A 447 ARG A 452 SITE 3 AC2 14 ARG A 580 SER A 642 SER A 643 ARG A 644 SITE 4 AC2 14 SF4 A 999 HOH A1000 CRYST1 185.900 71.800 72.200 90.00 90.00 77.70 B 1 1 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005379 -0.001173 0.000000 0.00000 SCALE2 0.000000 0.014255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013850 0.00000