PDB Short entry for 1FJ3 HEADER HYDROLASE 07-AUG-00 1FJ3 TITLE THERMOLYSIN (50% ACETONE SOAKED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS HYDROLASE, METALLOPROTEINASE, ORGANIC SOLVENT EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ENGLISH,C.R.GROOM,R.E.HUBBARD REVDAT 4 07-FEB-24 1FJ3 1 REMARK LINK REVDAT 3 04-OCT-17 1FJ3 1 REMARK REVDAT 2 24-FEB-09 1FJ3 1 VERSN REVDAT 1 18-APR-01 1FJ3 0 JRNL AUTH A.C.ENGLISH,C.R.GROOM,R.E.HUBBARD JRNL TITL EXPERIMENTAL AND COMPUTATIONAL MAPPING OF THE BINDING JRNL TITL 2 SURFACE OF A CRYSTALLINE PROTEIN. JRNL REF PROTEIN ENG. V. 14 47 2001 JRNL REFN ISSN 0269-2139 JRNL PMID 11287678 JRNL DOI 10.1093/PROTEIN/14.1.47 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 23648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1219 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.033 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.014 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MAXIMUM LIKELIHOOD PROCEDURE REMARK 4 REMARK 4 1FJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.6MM THERMOLYSIN, 45% DMSO, 50MM TRIS REMARK 280 -HCL, 2.5M CSCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.67667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.35333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.51500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.19167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.83833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.67667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.35333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.19167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.51500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.83833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 47 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 47 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 TYR A 106 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 TYR A 157 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 GLU A 166 OE1 - CD - OE2 ANGL. DEV. = -24.9 DEGREES REMARK 500 GLU A 166 CG - CD - OE2 ANGL. DEV. = 16.5 DEGREES REMARK 500 GLU A 190 OE1 - CD - OE2 ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 74.34 -163.91 REMARK 500 THR A 26 -61.10 86.61 REMARK 500 SER A 92 -169.79 66.26 REMARK 500 SER A 107 -159.71 60.98 REMARK 500 THR A 152 -94.75 -117.58 REMARK 500 TYR A 157 53.35 -94.35 REMARK 500 ASN A 159 -144.91 49.27 REMARK 500 THR A 194 85.53 24.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 25 13.65 REMARK 500 TYR A 193 -12.08 REMARK 500 GLY A 259 -13.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD2 REMARK 620 2 ASP A 57 OD1 47.9 REMARK 620 3 ASP A 59 OD1 73.3 120.1 REMARK 620 4 GLN A 61 O 90.5 98.7 91.3 REMARK 620 5 HOH A 522 O 96.9 86.5 90.5 172.6 REMARK 620 6 HOH A 533 O 130.1 84.0 155.9 83.5 91.9 REMARK 620 7 HOH A 553 O 153.2 154.4 80.5 95.6 77.7 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 79.5 REMARK 620 3 GLU A 177 OE2 125.3 46.1 REMARK 620 4 ASP A 185 OD1 159.8 120.7 74.8 REMARK 620 5 GLU A 187 O 83.9 146.3 143.0 78.9 REMARK 620 6 GLU A 190 OE1 81.8 128.1 124.3 84.1 77.4 REMARK 620 7 GLU A 190 OE2 94.2 87.2 80.7 86.5 123.3 46.5 REMARK 620 8 HOH A 520 O 103.2 78.2 74.3 83.4 77.4 153.6 154.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 107.0 REMARK 620 3 GLU A 166 OE1 92.9 123.1 REMARK 620 4 GLU A 166 OE2 140.5 90.6 48.9 REMARK 620 5 HOH A 509 O 93.2 120.9 110.1 107.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 92.1 REMARK 620 3 ASP A 185 OD2 91.5 96.2 REMARK 620 4 GLU A 190 OE2 90.3 176.8 81.6 REMARK 620 5 HOH A 519 O 169.9 92.8 96.7 85.1 REMARK 620 6 HOH A 536 O 88.4 90.0 173.9 92.3 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 OG1 74.1 REMARK 620 3 THR A 194 O 76.2 69.9 REMARK 620 4 ILE A 197 O 157.4 106.8 82.9 REMARK 620 5 ASP A 200 OD1 117.7 74.4 135.8 83.5 REMARK 620 6 HOH A 544 O 85.4 143.3 75.9 81.2 142.2 REMARK 620 7 HOH A 571 O 82.9 128.1 147.2 111.5 76.5 77.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TLI RELATED DB: PDB REMARK 900 1TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 2TLI RELATED DB: PDB REMARK 900 2TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 3TLI RELATED DB: PDB REMARK 900 3TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 4TLI RELATED DB: PDB REMARK 900 4TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 5TLI RELATED DB: PDB REMARK 900 5TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 6TLI RELATED DB: PDB REMARK 900 6TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 7TLI RELATED DB: PDB REMARK 900 7TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 8TLI RELATED DB: PDB REMARK 900 8TLI FORMS PART OF A SERIES OF STRUCTURES GENERATED FROM SOAKING REMARK 900 CRYSTALS OF THERMOLYSIN IN ORGANIC SOLVENTS/SOLUTES. REMARK 900 RELATED ID: 1FJO RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJQ RELATED DB: PDB REMARK 900 THERMOLYSIN (70% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJT RELATED DB: PDB REMARK 900 THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJU RELATED DB: PDB REMARK 900 THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJV RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJW RELATED DB: PDB REMARK 900 THERMOLYSIN (50 MM PHENOL SOAKED) DBREF 1FJ3 A 1 316 UNP P00800 THER_BACTH 1 316 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET ZN A 500 1 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET DMS A 505 4 HET ACN A 506 4 HET ACN A 507 4 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM ACN ACETONE FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS C2 H6 O S FORMUL 8 ACN 2(C3 H6 O) FORMUL 10 HOH *135(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ALA A 180 1 23 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 VAL A 230 1 7 HELIX 9 9 ASN A 233 GLY A 247 1 15 HELIX 10 10 GLY A 259 TYR A 274 1 16 HELIX 11 11 ASN A 280 GLY A 297 1 18 HELIX 12 12 SER A 300 GLY A 314 1 15 SHEET 1 A 5 ALA A 56 ASP A 57 0 SHEET 2 A 5 TYR A 28 TYR A 29 -1 N TYR A 28 O ASP A 57 SHEET 3 A 5 GLN A 17 TYR A 24 -1 O THR A 23 N TYR A 29 SHEET 4 A 5 THR A 4 ARG A 11 -1 O THR A 4 N TYR A 24 SHEET 5 A 5 GLN A 61 PHE A 62 1 N PHE A 62 O VAL A 9 SHEET 1 B 5 ALA A 113 TRP A 115 0 SHEET 2 B 5 MET A 120 TYR A 122 -1 O VAL A 121 N PHE A 114 SHEET 3 B 5 ILE A 100 VAL A 104 1 O ARG A 101 N MET A 120 SHEET 4 B 5 ILE A 39 ASP A 43 1 N PHE A 40 O ILE A 100 SHEET 5 B 5 GLN A 31 ASP A 32 -1 N ASP A 32 O ILE A 39 SHEET 1 C 5 ALA A 113 TRP A 115 0 SHEET 2 C 5 MET A 120 TYR A 122 -1 O VAL A 121 N PHE A 114 SHEET 3 C 5 ILE A 100 VAL A 104 1 O ARG A 101 N MET A 120 SHEET 4 C 5 ILE A 39 ASP A 43 1 N PHE A 40 O ILE A 100 SHEET 5 C 5 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 D 2 GLU A 187 ILE A 188 0 SHEET 2 D 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 E 2 GLY A 248 HIS A 250 0 SHEET 2 E 2 VAL A 253 VAL A 255 -1 N VAL A 253 O HIS A 250 LINK OD2 ASP A 57 CA CA A 503 1555 1555 2.70 LINK OD1 ASP A 57 CA CA A 503 1555 1555 2.62 LINK OD1 ASP A 59 CA CA A 503 1555 1555 2.54 LINK O GLN A 61 CA CA A 503 1555 1555 2.49 LINK OD2 ASP A 138 CA CA A 501 1555 1555 2.58 LINK NE2 HIS A 142 ZN ZN A 500 1555 1555 2.01 LINK NE2 HIS A 146 ZN ZN A 500 1555 1555 2.00 LINK OE1 GLU A 166 ZN ZN A 500 1555 1555 2.22 LINK OE2 GLU A 166 ZN ZN A 500 1555 1555 2.29 LINK OE1 GLU A 177 CA CA A 501 1555 1555 2.65 LINK OE2 GLU A 177 CA CA A 501 1555 1555 2.88 LINK OE2 GLU A 177 CA CA A 502 1555 1555 2.52 LINK O ASN A 183 CA CA A 502 1555 1555 2.65 LINK OD1 ASP A 185 CA CA A 501 1555 1555 2.65 LINK OD2 ASP A 185 CA CA A 502 1555 1555 2.50 LINK O GLU A 187 CA CA A 501 1555 1555 2.57 LINK OE1 GLU A 190 CA CA A 501 1555 1555 2.64 LINK OE2 GLU A 190 CA CA A 501 1555 1555 2.64 LINK OE2 GLU A 190 CA CA A 502 1555 1555 2.53 LINK O TYR A 193 CA CA A 504 1555 1555 2.65 LINK OG1 THR A 194 CA CA A 504 1555 1555 2.86 LINK O THR A 194 CA CA A 504 1555 1555 2.66 LINK O ILE A 197 CA CA A 504 1555 1555 2.68 LINK OD1 ASP A 200 CA CA A 504 1555 1555 2.61 LINK ZN ZN A 500 O HOH A 509 1555 1555 2.52 LINK CA CA A 501 O HOH A 520 1555 1555 2.71 LINK CA CA A 502 O HOH A 519 1555 1555 2.55 LINK CA CA A 502 O HOH A 536 1555 1555 2.45 LINK CA CA A 503 O HOH A 522 1555 1555 2.63 LINK CA CA A 503 O HOH A 533 1555 1555 2.59 LINK CA CA A 503 O HOH A 553 1555 1555 2.70 LINK CA CA A 504 O HOH A 544 1555 1555 2.69 LINK CA CA A 504 O HOH A 571 1555 1555 2.63 CISPEP 1 LEU A 50 PRO A 51 0 5.45 SITE 1 AC1 5 HIS A 142 GLU A 143 HIS A 146 GLU A 166 SITE 2 AC1 5 HOH A 509 SITE 1 AC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC2 6 GLU A 190 HOH A 520 SITE 1 AC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC3 6 HOH A 519 HOH A 536 SITE 1 AC4 6 ASP A 57 ASP A 59 GLN A 61 HOH A 522 SITE 2 AC4 6 HOH A 533 HOH A 553 SITE 1 AC5 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC5 6 HOH A 544 HOH A 571 SITE 1 AC6 4 HIS A 216 SER A 218 TYR A 251 HOH A 612 SITE 1 AC7 2 HIS A 142 ARG A 203 SITE 1 AC8 4 TYR A 81 TYR A 84 LEU A 144 VAL A 148 CRYST1 94.010 94.010 131.030 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010637 0.006141 0.000000 0.00000 SCALE2 0.000000 0.012283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007632 0.00000