PDB Short entry for 1FUG HEADER TRANSFERASE 25-FEB-96 1FUG TITLE S-ADENOSYLMETHIONINE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAT, ATP\:L-METHIONINE S-ADENOSYLTRANSFERASE; COMPND 5 EC: 2.5.1.6; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: TETRAGONAL MODIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS TRANSFERASE, ONE-CARBON METABOLISM, ATP-BINDING, MULTIGENE FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR Z.FU,G.D.MARKHAM,F.TAKUSAGAWA REVDAT 4 07-FEB-24 1FUG 1 REMARK REVDAT 3 13-JUL-11 1FUG 1 VERSN REVDAT 2 24-FEB-09 1FUG 1 VERSN REVDAT 1 01-AUG-96 1FUG 0 JRNL AUTH Z.FU,Y.HU,G.D.MARKHAM,F.TAKUSAGAWA JRNL TITL FLEXIBLE LOOP IN THE STRUCTURE OF S-ADENOSYLMETHIONINE JRNL TITL 2 SYNTHETASE CRYSTALLIZED IN THE TETRAGONAL MODIFICATION. JRNL REF J.BIOMOL.STRUCT.DYN. V. 13 727 1996 JRNL REFN ISSN 0739-1102 JRNL PMID 8723769 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 18581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE DIP100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ELMS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18581 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.50000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.25000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.75000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.25000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.75000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 171.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 256 HH22 ARG B 256 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 3 NE2 HIS A 3 CD2 -0.066 REMARK 500 HIS A 142 NE2 HIS A 142 CD2 -0.069 REMARK 500 HIS A 257 NE2 HIS A 257 CD2 -0.077 REMARK 500 HIS A 359 NE2 HIS A 359 CD2 -0.076 REMARK 500 HIS A 364 NE2 HIS A 364 CD2 -0.072 REMARK 500 HIS B 3 NE2 HIS B 3 CD2 -0.074 REMARK 500 HIS B 142 NE2 HIS B 142 CD2 -0.069 REMARK 500 HIS B 189 NE2 HIS B 189 CD2 -0.069 REMARK 500 HIS B 257 NE2 HIS B 257 CD2 -0.073 REMARK 500 HIS B 359 NE2 HIS B 359 CD2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 7 CA - CB - OG ANGL. DEV. = -19.9 DEGREES REMARK 500 VAL A 10 CA - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 VAL A 26 CG1 - CB - CG2 ANGL. DEV. = -11.4 DEGREES REMARK 500 ALA A 37 CB - CA - C ANGL. DEV. = -9.3 DEGREES REMARK 500 ALA A 60 CB - CA - C ANGL. DEV. = -9.4 DEGREES REMARK 500 TRP A 61 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP A 61 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 TRP A 61 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 61 CG - CD2 - CE3 ANGL. DEV. = 7.2 DEGREES REMARK 500 ILE A 67 CG1 - CB - CG2 ANGL. DEV. = -13.7 DEGREES REMARK 500 VAL A 78 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 TYR A 125 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 MET A 134 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 152 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TRP A 159 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 159 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 VAL A 168 CG1 - CB - CG2 ANGL. DEV. = -12.5 DEGREES REMARK 500 LEU A 198 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TRP A 215 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 215 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 215 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 227 CA - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 MET A 236 CG - SD - CE ANGL. DEV. = -13.2 DEGREES REMARK 500 CYS A 239 CA - CB - SG ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ALA A 255 CB - CA - C ANGL. DEV. = -11.2 DEGREES REMARK 500 GLY A 259 CA - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR A 280 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 351 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 382 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 TRP B 61 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP B 61 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET B 82 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 PHE B 84 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 PRO B 100 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP B 101 CA - C - N ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLN B 119 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 152 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP B 159 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 159 CB - CG - CD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 TRP B 159 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 41 76.01 -160.09 REMARK 500 LYS A 46 146.83 -176.43 REMARK 500 THR A 47 -75.52 47.48 REMARK 500 THR A 57 109.46 -172.04 REMARK 500 ALA A 60 164.11 -44.96 REMARK 500 SER A 88 30.61 -157.50 REMARK 500 PRO A 100 40.83 -75.89 REMARK 500 ASN A 103 -60.47 -93.32 REMARK 500 ASP A 110 -62.09 -148.21 REMARK 500 GLU A 113 44.12 -96.50 REMARK 500 ALA A 116 172.86 171.98 REMARK 500 ALA A 141 -75.11 -97.03 REMARK 500 ARG A 152 -74.11 -85.18 REMARK 500 THR A 156 -67.75 -130.36 REMARK 500 PRO A 162 28.25 -77.53 REMARK 500 ASP A 174 112.22 -160.72 REMARK 500 GLU A 204 -76.00 -72.97 REMARK 500 ILE A 206 -65.40 -104.88 REMARK 500 THR A 217 -166.40 -75.71 REMARK 500 VAL A 231 -54.50 -130.10 REMARK 500 TYR A 251 82.29 54.17 REMARK 500 ARG A 272 -74.29 -95.11 REMARK 500 LEU A 290 -3.03 -55.97 REMARK 500 PHE A 315 73.03 -115.95 REMARK 500 PHE A 333 88.70 -158.27 REMARK 500 LEU A 344 22.87 -142.20 REMARK 500 PRO A 349 66.65 -61.31 REMARK 500 ILE A 350 78.56 -101.52 REMARK 500 TYR A 351 -38.41 -132.97 REMARK 500 GLU A 363 20.95 -72.29 REMARK 500 HIS A 364 57.36 -117.48 REMARK 500 LYS A 369 97.64 -62.75 REMARK 500 ASP A 371 -56.98 -144.35 REMARK 500 THR B 47 -79.31 56.05 REMARK 500 VAL B 78 -74.29 -123.01 REMARK 500 ALA B 86 43.72 -91.17 REMARK 500 PRO B 100 9.85 -54.89 REMARK 500 ASP B 101 -43.47 -137.39 REMARK 500 VAL B 106 -57.31 -142.16 REMARK 500 ARG B 108 -154.87 -137.40 REMARK 500 ALA B 109 -157.61 -105.11 REMARK 500 THR B 127 127.40 -171.47 REMARK 500 THR B 130 -50.50 -129.76 REMARK 500 ASP B 131 -68.51 -149.67 REMARK 500 LEU B 133 31.55 -90.95 REMARK 500 ALA B 136 14.15 -60.65 REMARK 500 VAL B 145 44.43 -99.82 REMARK 500 ASP B 174 -6.77 -53.37 REMARK 500 LYS B 176 -72.50 -87.28 REMARK 500 VAL B 178 -66.37 -90.24 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 110 PRO A 111 146.34 REMARK 500 VAL B 106 ASP B 107 -145.74 REMARK 500 ASP B 107 ARG B 108 -142.79 REMARK 500 PHE B 170 GLN B 171 149.38 REMARK 500 GLY B 260 ALA B 261 -145.69 REMARK 500 CYS B 294 GLU B 295 143.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 44 0.10 SIDE CHAIN REMARK 500 ARG A 69 0.19 SIDE CHAIN REMARK 500 PHE A 84 0.12 SIDE CHAIN REMARK 500 TYR A 125 0.28 SIDE CHAIN REMARK 500 ARG A 143 0.10 SIDE CHAIN REMARK 500 PHE A 170 0.09 SIDE CHAIN REMARK 500 TYR A 251 0.13 SIDE CHAIN REMARK 500 ARG A 256 0.09 SIDE CHAIN REMARK 500 TYR A 276 0.15 SIDE CHAIN REMARK 500 TYR A 280 0.22 SIDE CHAIN REMARK 500 TYR A 300 0.12 SIDE CHAIN REMARK 500 PHE A 315 0.09 SIDE CHAIN REMARK 500 TYR A 351 0.17 SIDE CHAIN REMARK 500 TYR A 357 0.07 SIDE CHAIN REMARK 500 PHE A 360 0.09 SIDE CHAIN REMARK 500 ARG A 362 0.19 SIDE CHAIN REMARK 500 ARG B 38 0.10 SIDE CHAIN REMARK 500 PHE B 84 0.08 SIDE CHAIN REMARK 500 TYR B 140 0.07 SIDE CHAIN REMARK 500 TYR B 172 0.07 SIDE CHAIN REMARK 500 ARG B 272 0.12 SIDE CHAIN REMARK 500 TYR B 276 0.10 SIDE CHAIN REMARK 500 TYR B 280 0.09 SIDE CHAIN REMARK 500 TYR B 300 0.07 SIDE CHAIN REMARK 500 PHE B 315 0.09 SIDE CHAIN REMARK 500 ARG B 336 0.09 SIDE CHAIN REMARK 500 TYR B 338 0.12 SIDE CHAIN REMARK 500 HIS B 359 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 132 -10.26 REMARK 500 ARG A 152 -10.60 REMARK 500 GLU B 363 12.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 1FUG A 1 383 UNP P0A817 METK_ECOLI 2 384 DBREF 1FUG B 1 383 UNP P0A817 METK_ECOLI 2 384 SEQRES 1 A 383 ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU GLY SEQRES 2 A 383 HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA VAL SEQRES 3 A 383 LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG VAL SEQRES 4 A 383 ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU VAL SEQRES 5 A 383 GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE GLU SEQRES 6 A 383 GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR VAL SEQRES 7 A 383 HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA VAL SEQRES 8 A 383 LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN GLN SEQRES 9 A 383 GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA GLY SEQRES 10 A 383 ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU THR SEQRES 11 A 383 ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS ARG SEQRES 12 A 383 LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY THR SEQRES 13 A 383 LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL THR SEQRES 14 A 383 PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP ALA SEQRES 15 A 383 VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP GLN SEQRES 16 A 383 LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE LYS SEQRES 17 A 383 PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR LYS SEQRES 18 A 383 PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY GLY SEQRES 19 A 383 PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE ILE SEQRES 20 A 383 VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY GLY SEQRES 21 A 383 ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SER SEQRES 22 A 383 ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE VAL SEQRES 23 A 383 ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL SER SEQRES 24 A 383 TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET VAL SEQRES 25 A 383 GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN LEU SEQRES 26 A 383 THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO TYR SEQRES 27 A 383 GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE TYR SEQRES 28 A 383 LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU HIS SEQRES 29 A 383 PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU ARG SEQRES 30 A 383 ASP ALA ALA GLY LEU LYS SEQRES 1 B 383 ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU GLY SEQRES 2 B 383 HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA VAL SEQRES 3 B 383 LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG VAL SEQRES 4 B 383 ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU VAL SEQRES 5 B 383 GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE GLU SEQRES 6 B 383 GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR VAL SEQRES 7 B 383 HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA VAL SEQRES 8 B 383 LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN GLN SEQRES 9 B 383 GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA GLY SEQRES 10 B 383 ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU THR SEQRES 11 B 383 ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS ARG SEQRES 12 B 383 LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY THR SEQRES 13 B 383 LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL THR SEQRES 14 B 383 PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP ALA SEQRES 15 B 383 VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP GLN SEQRES 16 B 383 LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE LYS SEQRES 17 B 383 PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR LYS SEQRES 18 B 383 PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY GLY SEQRES 19 B 383 PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE ILE SEQRES 20 B 383 VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY GLY SEQRES 21 B 383 ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SER SEQRES 22 B 383 ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE VAL SEQRES 23 B 383 ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL SER SEQRES 24 B 383 TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET VAL SEQRES 25 B 383 GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN LEU SEQRES 26 B 383 THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO TYR SEQRES 27 B 383 GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE TYR SEQRES 28 B 383 LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU HIS SEQRES 29 B 383 PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU ARG SEQRES 30 B 383 ASP ALA ALA GLY LEU LYS HELIX 1 1 PRO A 15 GLU A 32 1 18 HELIX 2 2 ILE A 64 ILE A 75 1 12 HELIX 3 3 ALA A 136 VAL A 151 1 16 HELIX 4 4 GLN A 195 GLU A 205 1 11 HELIX 5 5 ILE A 207 ILE A 210 1 4 HELIX 6 6 PRO A 235 GLY A 237 5 3 HELIX 7 7 VAL A 270 ALA A 288 1 19 HELIX 8 8 SER A 322 PHE A 332 1 11 HELIX 9 9 PRO A 337 LEU A 340 1 4 HELIX 10 10 GLN A 342 LEU A 344 5 3 HELIX 11 11 LYS A 352 ALA A 356 1 5 HELIX 12 12 GLN A 374 ALA A 380 1 7 HELIX 13 13 PRO B 15 GLN B 33 1 19 HELIX 14 14 ILE B 64 ILE B 75 1 12 HELIX 15 15 SER B 80 MET B 82 5 3 HELIX 16 16 LEU B 112 GLN B 114 5 3 HELIX 17 17 ALA B 136 ASN B 154 1 19 HELIX 18 18 GLN B 195 MET B 203 1 9 HELIX 19 19 ILE B 207 ILE B 210 1 4 HELIX 20 20 ALA B 213 TRP B 215 5 3 HELIX 21 21 ILE B 247 THR B 250 1 4 HELIX 22 22 VAL B 270 ALA B 287 1 18 HELIX 23 23 GLU B 323 PHE B 332 1 10 HELIX 24 24 PRO B 337 LEU B 344 1 8 HELIX 25 25 TYR B 351 ALA B 356 5 6 HELIX 26 26 PRO B 366 GLU B 368 5 3 HELIX 27 27 GLN B 374 ARG B 377 1 4 SHEET 1 A 4 HIS A 3 VAL A 10 0 SHEET 2 A 4 LYS A 165 TYR A 172 -1 N TYR A 172 O HIS A 3 SHEET 3 A 4 ALA A 182 SER A 186 -1 N SER A 186 O LYS A 165 SHEET 4 A 4 LYS A 221 ILE A 224 1 N LYS A 221 O VAL A 183 SHEET 1 B 4 CYS A 239 LEU A 241 0 SHEET 2 B 4 GLU A 42 LYS A 46 -1 N VAL A 45 O GLY A 240 SHEET 3 B 4 MET A 49 ILE A 56 -1 N GLY A 53 O GLU A 42 SHEET 4 B 4 ALA A 90 LYS A 97 1 N ALA A 90 O VAL A 50 SHEET 1 C 3 GLY A 120 THR A 127 0 SHEET 2 C 3 ARG A 293 TYR A 300 -1 N TYR A 300 O GLY A 120 SHEET 3 C 3 SER A 309 GLU A 313 -1 N GLU A 313 O GLU A 295 SHEET 1 D 4 SER B 7 VAL B 10 0 SHEET 2 D 4 ALA B 164 GLN B 171 -1 N VAL B 168 O SER B 7 SHEET 3 D 4 GLY B 179 THR B 187 -1 N SER B 186 O LYS B 165 SHEET 4 D 4 LYS B 221 ILE B 224 1 N LYS B 221 O VAL B 183 SHEET 1 E 3 VAL B 39 LYS B 46 0 SHEET 2 E 3 MET B 49 ILE B 56 -1 N GLU B 55 O ALA B 40 SHEET 3 E 3 ALA B 90 LYS B 97 1 N ALA B 90 O VAL B 50 SHEET 1 F 3 GLY B 120 TYR B 125 0 SHEET 2 F 3 CYS B 294 TYR B 300 -1 N TYR B 300 O GLY B 120 SHEET 3 F 3 MET B 311 THR B 314 -1 N GLU B 313 O GLU B 295 CRYST1 121.000 121.000 171.000 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005848 0.00000