PDB Short entry for 1FV5 HEADER TRANSCRIPTION 18-SEP-00 1FV5 TITLE SOLUTION STRUCTURE OF THE FIRST ZINC FINGER FROM THE DROSOPHILA U- TITLE 2 SHAPED TRANSCRIPTION FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIRST ZINC FINGER OF U-SHAPED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST ZINC FINGER DOMAIN (RESIDUES 202-235); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS ZINC FINGER, CCHC, PROTEIN INTERACTION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.K.LIEW,K.KOWALSKI,A.H.FOX,A.NEWTON,B.K.SHARPE,M.CROSSLEY,J.P.MACKAY REVDAT 4 23-FEB-22 1FV5 1 REMARK LINK REVDAT 3 24-FEB-09 1FV5 1 VERSN REVDAT 2 10-JAN-01 1FV5 1 JRNL REVDAT 1 04-OCT-00 1FV5 0 JRNL AUTH C.K.LIEW,K.KOWALSKI,A.H.FOX,A.NEWTON,B.K.SHARPE,M.CROSSLEY, JRNL AUTH 2 J.P.MACKAY JRNL TITL SOLUTION STRUCTURES OF TWO CCHC ZINC FINGERS FROM THE FOG JRNL TITL 2 FAMILY PROTEIN U-SHAPED THAT MEDIATE PROTEIN-PROTEIN JRNL TITL 3 INTERACTIONS. JRNL REF STRUCTURE FOLD.DES. V. 8 1157 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11080638 JRNL DOI 10.1016/S0969-2126(00)00527-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.0 REMARK 3 AUTHORS : GUENTHER (XWINNMR), WARREN, NILGES, KUSZEWSKI, REMARK 3 CLORE, BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 356 RESTRAINTS, 324 ARE NOE-DERIVED DISTANCE CONSTRAINTS AND 32 REMARK 3 ARE DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1FV5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011927. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM U-SHAPED FIRST FINGER; 95% REMARK 210 H2O, 5% D2O; 0.7MM U-SHAPED REMARK 210 FIRST FINGER 15N-LABELLED; 95% REMARK 210 H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; HNHA; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.2, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING CARTESIAN DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND REMARK 210 HETERONUCLEAR TECHNIQUES ON UNLABELLED AND 15N-LABELLED PEPTIDE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 37 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 110.2 REMARK 620 3 HIS A 27 NE2 110.0 109.8 REMARK 620 4 CYS A 32 SG 108.8 110.1 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 37 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FU9 RELATED DB: PDB REMARK 900 1FU9 CONTAINS THE NINTH ZINC FINGER OF U-SHAPED DBREF 1FV5 A 3 36 UNP Q9VPQ6 USH_DROME 186 219 SEQADV 1FV5 GLY A 1 UNP Q9VPQ6 CLONING ARTIFACT SEQADV 1FV5 SER A 2 UNP Q9VPQ6 CLONING ARTIFACT SEQRES 1 A 36 GLY SER LEU LEU LYS PRO ALA ARG PHE MET CYS LEU PRO SEQRES 2 A 36 CYS GLY ILE ALA PHE SER SER PRO SER THR LEU GLU ALA SEQRES 3 A 36 HIS GLN ALA TYR TYR CYS SER HIS ARG ILE HET ZN A 37 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 20 TYR A 31 1 12 LINK SG CYS A 11 ZN ZN A 37 1555 1555 2.30 LINK SG CYS A 14 ZN ZN A 37 1555 1555 2.30 LINK NE2 HIS A 27 ZN ZN A 37 1555 1555 2.00 LINK SG CYS A 32 ZN ZN A 37 1555 1555 2.30 SITE 1 AC1 4 CYS A 11 CYS A 14 HIS A 27 CYS A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000