PDB Short entry for 1G59 HEADER LIGASE/RNA 31-OCT-00 1G59 TITLE GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU). COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(GLU); COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLUTAMYL-TRNA SYNTHETASE; COMPND 7 CHAIN: A, C; COMPND 8 EC: 6.1.1.17; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 5 ORGANISM_TAXID: 274; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PK7 KEYWDS AMINOACYL-TRNA SYNTHETASE, PROTEIN-RNA COMPLEX, TRANSFER RNA, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL KEYWDS 3 GENOMICS, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SEKINE,O.NUREKI,A.SHIMADA,D.G.VASSYLYEV,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-AUG-23 1G59 1 REMARK REVDAT 2 24-FEB-09 1G59 1 VERSN REVDAT 1 01-SEP-01 1G59 0 JRNL AUTH S.SEKINE,O.NUREKI,A.SHIMADA,D.G.VASSYLYEV,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR ANTICODON RECOGNITION BY DISCRIMINATING JRNL TITL 2 GLUTAMYL-TRNA SYNTHETASE. JRNL REF NAT.STRUCT.BIOL. V. 8 203 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11224561 JRNL DOI 10.1038/84927 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 56215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2896 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5381 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3819 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 288 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7626 REMARK 3 NUCLEIC ACID ATOMS : 3194 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 33.69 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.708 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1G59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000012249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, AMMONIUM SULFATE, MOPS-NA, REMARK 280 MPD, PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 109.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 109.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.33500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.99000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 109.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.33500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.99000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 109.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 240 OG1 THR A 242 2.14 REMARK 500 NH2 ARG C 163 O HIS C 232 2.14 REMARK 500 NH2 ARG A 39 OD2 ASP A 195 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C B 525 C2' C B 525 C1' -0.049 REMARK 500 G B 526 C3' G B 526 C2' -0.074 REMARK 500 C B 536 C3' C B 536 C2' -0.066 REMARK 500 U B 555 C3' U B 555 C2' -0.068 REMARK 500 G B 557 P G B 557 O5' 0.069 REMARK 500 G D 526 C2' G D 526 C1' -0.048 REMARK 500 G D 549 C3' G D 549 C2' -0.071 REMARK 500 G D 557 P G D 557 O5' 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 515 C3' - C2' - C1' ANGL. DEV. = 5.1 DEGREES REMARK 500 G B 517 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 G B 518 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 G B 529 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 C B 556 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 A B 558 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES REMARK 500 A B 573 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES REMARK 500 C B 575 C3' - C2' - C1' ANGL. DEV. = 4.9 DEGREES REMARK 500 A B 576 C3' - C2' - C1' ANGL. DEV. = 5.1 DEGREES REMARK 500 G D 515 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 G D 518 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 U D 520 C3' - C2' - C1' ANGL. DEV. = 4.8 DEGREES REMARK 500 C D 541 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 C D 556 C3' - C2' - C1' ANGL. DEV. = 5.5 DEGREES REMARK 500 G D 557 C3' - C2' - C1' ANGL. DEV. = 5.3 DEGREES REMARK 500 G D 557 N9 - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 A D 558 C3' - C2' - C1' ANGL. DEV. = 5.2 DEGREES REMARK 500 U D 560 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 C D 572 C3' - C2' - C1' ANGL. DEV. = 5.1 DEGREES REMARK 500 C D 575 C3' - C2' - C1' ANGL. DEV. = 5.1 DEGREES REMARK 500 A D 576 C3' - C2' - C1' ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 59.17 -113.19 REMARK 500 ARG A 45 29.46 -64.66 REMARK 500 ALA A 74 -165.25 -42.07 REMARK 500 ALA A 75 171.14 175.70 REMARK 500 LYS A 98 47.78 -75.04 REMARK 500 ARG A 99 -8.81 -155.84 REMARK 500 TYR A 122 151.20 -45.57 REMARK 500 ARG A 140 23.23 -65.56 REMARK 500 PRO A 151 95.38 -64.09 REMARK 500 GLU A 226 130.66 -39.82 REMARK 500 ASP A 240 36.76 -85.46 REMARK 500 LYS A 241 9.33 48.79 REMARK 500 ILE A 244 126.56 -34.08 REMARK 500 ARG A 356 -49.68 -29.52 REMARK 500 GLN A 404 116.91 -33.99 REMARK 500 SER A 441 -56.85 -128.43 REMARK 500 LEU A 442 -7.34 85.85 REMARK 500 PRO A 445 -164.03 -69.93 REMARK 500 LYS A 456 -70.47 -40.40 REMARK 500 ALA C 7 79.78 -111.07 REMARK 500 ASP C 42 51.34 -108.72 REMARK 500 ALA C 46 -57.66 -28.71 REMARK 500 PRO C 50 87.18 -66.96 REMARK 500 ALA C 52 -26.30 -39.58 REMARK 500 ALA C 74 -161.66 -43.98 REMARK 500 ALA C 75 171.04 175.90 REMARK 500 LEU C 88 -70.49 -52.23 REMARK 500 LEU C 97 -71.94 -54.27 REMARK 500 ARG C 99 -8.62 -153.07 REMARK 500 TYR C 122 154.46 -49.80 REMARK 500 ARG C 140 26.19 -68.39 REMARK 500 PRO C 151 97.28 -59.55 REMARK 500 GLU C 226 126.12 -36.65 REMARK 500 ASP C 240 41.42 -83.02 REMARK 500 LYS C 241 11.10 44.90 REMARK 500 ILE C 244 128.73 -36.69 REMARK 500 GLN C 404 114.92 -30.64 REMARK 500 SER C 441 -51.86 -129.75 REMARK 500 LEU C 442 -11.85 87.26 REMARK 500 PRO C 445 -168.68 -70.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G D 557 0.06 SIDE CHAIN REMARK 500 TYR C 269 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GLN RELATED DB: PDB REMARK 900 1GLN IS THE TRNA-FREE STRUCTURE OF THE SAME ENZYME. REMARK 900 RELATED ID: TRT001000193.1 RELATED DB: TARGETDB DBREF 1G59 A 1 468 UNP P27000 SYE_THET8 1 468 DBREF 1G59 C 1 468 UNP P27000 SYE_THET8 1 468 DBREF 1G59 B 501 576 PDB 1G59 1G59 501 576 DBREF 1G59 D 501 576 PDB 1G59 1G59 501 576 SEQRES 1 B 75 G G C C C C A U C G U C U SEQRES 2 B 75 A G C G G U U A G G A C G SEQRES 3 B 75 C G G C C C U C U C A A G SEQRES 4 B 75 G C C G A A A C G G G G G SEQRES 5 B 75 U U C G A U U C C C C C U SEQRES 6 B 75 G G G G U C A C C A SEQRES 1 D 75 G G C C C C A U C G U C U SEQRES 2 D 75 A G C G G U U A G G A C G SEQRES 3 D 75 C G G C C C U C U C A A G SEQRES 4 D 75 G C C G A A A C G G G G G SEQRES 5 D 75 U U C G A U U C C C C C U SEQRES 6 D 75 G G G G U C A C C A SEQRES 1 A 468 MET VAL VAL THR ARG ILE ALA PRO SER PRO THR GLY ASP SEQRES 2 A 468 PRO HIS VAL GLY THR ALA TYR ILE ALA LEU PHE ASN TYR SEQRES 3 A 468 ALA TRP ALA ARG ARG ASN GLY GLY ARG PHE ILE VAL ARG SEQRES 4 A 468 ILE GLU ASP THR ASP ARG ALA ARG TYR VAL PRO GLY ALA SEQRES 5 A 468 GLU GLU ARG ILE LEU ALA ALA LEU LYS TRP LEU GLY LEU SEQRES 6 A 468 SER TYR ASP GLU GLY PRO ASP VAL ALA ALA PRO THR GLY SEQRES 7 A 468 PRO TYR ARG GLN SER GLU ARG LEU PRO LEU TYR GLN LYS SEQRES 8 A 468 TYR ALA GLU GLU LEU LEU LYS ARG GLY TRP ALA TYR ARG SEQRES 9 A 468 ALA PHE GLU THR PRO GLU GLU LEU GLU GLN ILE ARG LYS SEQRES 10 A 468 GLU LYS GLY GLY TYR ASP GLY ARG ALA ARG ASN ILE PRO SEQRES 11 A 468 PRO GLU GLU ALA GLU GLU ARG ALA ARG ARG GLY GLU PRO SEQRES 12 A 468 HIS VAL ILE ARG LEU LYS VAL PRO ARG PRO GLY THR THR SEQRES 13 A 468 GLU VAL LYS ASP GLU LEU ARG GLY VAL VAL VAL TYR ASP SEQRES 14 A 468 ASN GLN GLU ILE PRO ASP VAL VAL LEU LEU LYS SER ASP SEQRES 15 A 468 GLY TYR PRO THR TYR HIS LEU ALA ASN VAL VAL ASP ASP SEQRES 16 A 468 HIS LEU MET GLY VAL THR ASP VAL ILE ARG ALA GLU GLU SEQRES 17 A 468 TRP LEU VAL SER THR PRO ILE HIS VAL LEU LEU TYR ARG SEQRES 18 A 468 ALA PHE GLY TRP GLU ALA PRO ARG PHE TYR HIS MET PRO SEQRES 19 A 468 LEU LEU ARG ASN PRO ASP LYS THR LYS ILE SER LYS ARG SEQRES 20 A 468 LYS SER HIS THR SER LEU ASP TRP TYR LYS ALA GLU GLY SEQRES 21 A 468 PHE LEU PRO GLU ALA LEU ARG ASN TYR LEU CYS LEU MET SEQRES 22 A 468 GLY PHE SER MET PRO ASP GLY ARG GLU ILE PHE THR LEU SEQRES 23 A 468 GLU GLU PHE ILE GLN ALA PHE THR TRP GLU ARG VAL SER SEQRES 24 A 468 LEU GLY GLY PRO VAL PHE ASP LEU GLU LYS LEU ARG TRP SEQRES 25 A 468 MET ASN GLY LYS TYR ILE ARG GLU VAL LEU SER LEU GLU SEQRES 26 A 468 GLU VAL ALA GLU ARG VAL LYS PRO PHE LEU ARG GLU ALA SEQRES 27 A 468 GLY LEU SER TRP GLU SER GLU ALA TYR LEU ARG ARG ALA SEQRES 28 A 468 VAL GLU LEU MET ARG PRO ARG PHE ASP THR LEU LYS GLU SEQRES 29 A 468 PHE PRO GLU LYS ALA ARG TYR LEU PHE THR GLU ASP TYR SEQRES 30 A 468 PRO VAL SER GLU LYS ALA GLN ARG LYS LEU GLU GLU GLY SEQRES 31 A 468 LEU PRO LEU LEU LYS GLU LEU TYR PRO ARG LEU ARG ALA SEQRES 32 A 468 GLN GLU GLU TRP THR GLU ALA ALA LEU GLU ALA LEU LEU SEQRES 33 A 468 ARG GLY PHE ALA ALA GLU LYS GLY VAL LYS LEU GLY GLN SEQRES 34 A 468 VAL ALA GLN PRO LEU ARG ALA ALA LEU THR GLY SER LEU SEQRES 35 A 468 GLU THR PRO GLY LEU PHE GLU ILE LEU ALA LEU LEU GLY SEQRES 36 A 468 LYS GLU ARG ALA LEU ARG ARG LEU GLU ARG ALA LEU ALA SEQRES 1 C 468 MET VAL VAL THR ARG ILE ALA PRO SER PRO THR GLY ASP SEQRES 2 C 468 PRO HIS VAL GLY THR ALA TYR ILE ALA LEU PHE ASN TYR SEQRES 3 C 468 ALA TRP ALA ARG ARG ASN GLY GLY ARG PHE ILE VAL ARG SEQRES 4 C 468 ILE GLU ASP THR ASP ARG ALA ARG TYR VAL PRO GLY ALA SEQRES 5 C 468 GLU GLU ARG ILE LEU ALA ALA LEU LYS TRP LEU GLY LEU SEQRES 6 C 468 SER TYR ASP GLU GLY PRO ASP VAL ALA ALA PRO THR GLY SEQRES 7 C 468 PRO TYR ARG GLN SER GLU ARG LEU PRO LEU TYR GLN LYS SEQRES 8 C 468 TYR ALA GLU GLU LEU LEU LYS ARG GLY TRP ALA TYR ARG SEQRES 9 C 468 ALA PHE GLU THR PRO GLU GLU LEU GLU GLN ILE ARG LYS SEQRES 10 C 468 GLU LYS GLY GLY TYR ASP GLY ARG ALA ARG ASN ILE PRO SEQRES 11 C 468 PRO GLU GLU ALA GLU GLU ARG ALA ARG ARG GLY GLU PRO SEQRES 12 C 468 HIS VAL ILE ARG LEU LYS VAL PRO ARG PRO GLY THR THR SEQRES 13 C 468 GLU VAL LYS ASP GLU LEU ARG GLY VAL VAL VAL TYR ASP SEQRES 14 C 468 ASN GLN GLU ILE PRO ASP VAL VAL LEU LEU LYS SER ASP SEQRES 15 C 468 GLY TYR PRO THR TYR HIS LEU ALA ASN VAL VAL ASP ASP SEQRES 16 C 468 HIS LEU MET GLY VAL THR ASP VAL ILE ARG ALA GLU GLU SEQRES 17 C 468 TRP LEU VAL SER THR PRO ILE HIS VAL LEU LEU TYR ARG SEQRES 18 C 468 ALA PHE GLY TRP GLU ALA PRO ARG PHE TYR HIS MET PRO SEQRES 19 C 468 LEU LEU ARG ASN PRO ASP LYS THR LYS ILE SER LYS ARG SEQRES 20 C 468 LYS SER HIS THR SER LEU ASP TRP TYR LYS ALA GLU GLY SEQRES 21 C 468 PHE LEU PRO GLU ALA LEU ARG ASN TYR LEU CYS LEU MET SEQRES 22 C 468 GLY PHE SER MET PRO ASP GLY ARG GLU ILE PHE THR LEU SEQRES 23 C 468 GLU GLU PHE ILE GLN ALA PHE THR TRP GLU ARG VAL SER SEQRES 24 C 468 LEU GLY GLY PRO VAL PHE ASP LEU GLU LYS LEU ARG TRP SEQRES 25 C 468 MET ASN GLY LYS TYR ILE ARG GLU VAL LEU SER LEU GLU SEQRES 26 C 468 GLU VAL ALA GLU ARG VAL LYS PRO PHE LEU ARG GLU ALA SEQRES 27 C 468 GLY LEU SER TRP GLU SER GLU ALA TYR LEU ARG ARG ALA SEQRES 28 C 468 VAL GLU LEU MET ARG PRO ARG PHE ASP THR LEU LYS GLU SEQRES 29 C 468 PHE PRO GLU LYS ALA ARG TYR LEU PHE THR GLU ASP TYR SEQRES 30 C 468 PRO VAL SER GLU LYS ALA GLN ARG LYS LEU GLU GLU GLY SEQRES 31 C 468 LEU PRO LEU LEU LYS GLU LEU TYR PRO ARG LEU ARG ALA SEQRES 32 C 468 GLN GLU GLU TRP THR GLU ALA ALA LEU GLU ALA LEU LEU SEQRES 33 C 468 ARG GLY PHE ALA ALA GLU LYS GLY VAL LYS LEU GLY GLN SEQRES 34 C 468 VAL ALA GLN PRO LEU ARG ALA ALA LEU THR GLY SER LEU SEQRES 35 C 468 GLU THR PRO GLY LEU PHE GLU ILE LEU ALA LEU LEU GLY SEQRES 36 C 468 LYS GLU ARG ALA LEU ARG ARG LEU GLU ARG ALA LEU ALA FORMUL 5 HOH *272(H2 O) HELIX 1 1 HIS A 15 ASN A 32 1 18 HELIX 2 2 GLY A 51 LEU A 63 1 13 HELIX 3 3 GLN A 82 GLU A 84 5 3 HELIX 4 4 ARG A 85 LYS A 98 1 14 HELIX 5 5 THR A 108 LYS A 119 1 12 HELIX 6 6 GLY A 124 ILE A 129 5 6 HELIX 7 7 PRO A 130 ARG A 140 1 11 HELIX 8 8 GLN A 171 ILE A 173 5 3 HELIX 9 9 THR A 186 MET A 198 1 13 HELIX 10 10 GLU A 208 LEU A 210 5 3 HELIX 11 11 SER A 212 PHE A 223 1 12 HELIX 12 12 SER A 252 GLU A 259 1 8 HELIX 13 13 LEU A 262 MET A 273 1 12 HELIX 14 14 THR A 285 PHE A 293 1 9 HELIX 15 15 THR A 294 ARG A 297 5 4 HELIX 16 16 ASP A 306 VAL A 321 1 16 HELIX 17 17 SER A 323 ALA A 338 1 16 HELIX 18 18 SER A 344 ARG A 356 1 13 HELIX 19 19 PRO A 357 PHE A 359 5 3 HELIX 20 20 LYS A 363 ALA A 369 1 7 HELIX 21 21 ARG A 370 PHE A 373 5 4 HELIX 22 22 SER A 380 LEU A 391 1 12 HELIX 23 23 GLY A 390 GLU A 396 1 7 HELIX 24 24 LEU A 397 GLN A 404 1 8 HELIX 25 25 THR A 408 LYS A 423 1 16 HELIX 26 26 LEU A 427 THR A 439 1 13 HELIX 27 27 GLY A 446 GLY A 455 1 10 HELIX 28 28 GLY A 455 ALA A 468 1 14 HELIX 29 29 HIS C 15 ASN C 32 1 18 HELIX 30 30 ASP C 44 TYR C 48 5 5 HELIX 31 31 ALA C 52 LEU C 63 1 12 HELIX 32 32 ARG C 85 LYS C 98 1 14 HELIX 33 33 THR C 108 LYS C 119 1 12 HELIX 34 34 GLY C 124 ILE C 129 5 6 HELIX 35 35 PRO C 130 ARG C 140 1 11 HELIX 36 36 GLN C 171 ILE C 173 5 3 HELIX 37 37 THR C 186 MET C 198 1 13 HELIX 38 38 GLU C 208 LEU C 210 5 3 HELIX 39 39 SER C 212 PHE C 223 1 12 HELIX 40 40 SER C 252 GLU C 259 1 8 HELIX 41 41 LEU C 262 MET C 273 1 12 HELIX 42 42 THR C 285 PHE C 293 1 9 HELIX 43 43 THR C 294 ARG C 297 5 4 HELIX 44 44 ASP C 306 VAL C 321 1 16 HELIX 45 45 SER C 323 ALA C 338 1 16 HELIX 46 46 SER C 344 ARG C 356 1 13 HELIX 47 47 PRO C 357 PHE C 359 5 3 HELIX 48 48 LYS C 363 ALA C 369 1 7 HELIX 49 49 ARG C 370 PHE C 373 5 4 HELIX 50 50 SER C 380 LEU C 391 1 12 HELIX 51 51 GLY C 390 GLU C 396 1 7 HELIX 52 52 LEU C 397 GLN C 404 1 8 HELIX 53 53 THR C 408 LYS C 423 1 16 HELIX 54 54 LYS C 426 THR C 439 1 14 HELIX 55 55 GLY C 446 GLY C 455 1 10 HELIX 56 56 GLY C 455 ALA C 468 1 14 SHEET 1 A 2 VAL A 3 ILE A 6 0 SHEET 2 A 2 ARG A 35 VAL A 38 1 O ARG A 35 N THR A 4 SHEET 1 B 3 ALA A 102 ALA A 105 0 SHEET 2 B 3 VAL A 145 LEU A 148 -1 N VAL A 145 O ALA A 105 SHEET 3 B 3 VAL A 177 LEU A 179 -1 N LEU A 178 O ILE A 146 SHEET 1 C 2 THR A 155 ASP A 160 0 SHEET 2 C 2 GLY A 164 ASP A 169 -1 N GLY A 164 O ASP A 160 SHEET 1 D 2 ASP A 202 ALA A 206 0 SHEET 2 D 2 ARG A 229 MET A 233 1 O ARG A 229 N VAL A 203 SHEET 1 E 2 VAL C 3 ILE C 6 0 SHEET 2 E 2 ARG C 35 VAL C 38 1 O ARG C 35 N THR C 4 SHEET 1 F 3 ALA C 102 ALA C 105 0 SHEET 2 F 3 VAL C 145 LEU C 148 -1 N VAL C 145 O ALA C 105 SHEET 3 F 3 VAL C 177 LEU C 179 -1 N LEU C 178 O ILE C 146 SHEET 1 G 2 THR C 155 ASP C 160 0 SHEET 2 G 2 GLY C 164 ASP C 169 -1 O GLY C 164 N ASP C 160 SHEET 1 H 2 ASP C 202 ALA C 206 0 SHEET 2 H 2 ARG C 229 MET C 233 1 O ARG C 229 N VAL C 203 CRYST1 109.980 218.670 134.670 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007426 0.00000